IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3214	 54.07	0	3327645..3327890	+	81	206576678	-	KPK_3274	-	hypothetical protein
3215	 50.64	0	3328052..3328207	-	51	206577447	-	KPK_3275	-	hypothetical protein
3216	 58.24	0	3328206..3330899	+	897	206580515	mgtB	KPK_3276	-	magnesium-translocating P-type ATPase
3217	 44.44	-1	3330975..3331199	+	74	206577159	-	KPK_3277	-	hypothetical protein
3218	 61.10	0	3331214..3332866	+	550	206577879	-	KPK_3278	-	putative Na/Pi-cotransporter
3219	 55.07	0	3332932..3333276	+	114	206576284	-	KPK_3279	-	hypothetical protein
3220	 58.29	0	3333602..3334735	+	377	206577009	-	KPK_3280	-	putative tetracycline resistance protein
3221	 52.72	0	3334879..3335466	-	195	206580145	tetR	KPK_3281	-	tetracycline repressor protein class A from transposon 1721
3222	 40.91	-2	3335465..3335596	+	43	206580917	-	KPK_3282	-	hypothetical protein
3223	 55.58	0	3335633..3337075	+	480	206580631	-	KPK_3283	-	drug resistance MFS transporter, drug:H+ antiporter-1 (DHA2) family
3224	 60.94	0	3337198..3337983	-	261	206578725	-	KPK_3284	-	oxidoreductase, short chain dehydrogenase/reductase family
3225	 54.40	0	3338035..3338931	-	298	206579239	-	KPK_3285	-	transcriptional regulator, GntR family
3226	 57.56	0	3339124..3339936	+	270	206577215	-	KPK_3286	-	amino acid ABC transporter, periplasmic amino acid-binding protein
3227	 58.54	0	3339964..3340689	+	241	206577408	-	KPK_3287	-	amino acid ABC transporter, permease protein
3228	 58.97	0	3340686..3341426	+	246	206578157	-	KPK_3288	-	amino acid ABC transporter, ATP-binding protein
3229	 61.65	0	3341440..3342615	+	391	206576267	-	KPK_3289	-	peptidase, ArgE/DapE family
3230	 63.12	0	3342612..3343712	+	366	206577016	-	KPK_3290	-	mandelate racemase/muconate lactonizing enzyme family protein
3231	 60.85	0	3343699..3344868	+	389	206580547	-	KPK_3291	-	creatinase/peptidase, M24 family
3232	 61.04	0	3344879..3345802	+	307	206579420	-	KPK_3293	-	dihydrodipicolinate synthetase family protein
3233	 62.11	0	3345786..3346883	-	365	206578646	-	KPK_3292	-	CTP synthase family protein
3234	 58.89	0	3346952..3348160	+	402	206577490	aatA	KPK_3294	-	aspartate transaminase
3235	 49.36	-1	3348167..3348478	+	103	206578219	-	KPK_3295	-	hypothetical protein
3236	 40.43	-2	3348529..3349134	+	201	206576249	-	KPK_3296	-	transcriptional regulator, TetR family
3237	 46.59	-1	3349161..3349937	-	258	206576373	-	KPK_3297	-	hypothetical protein
3238	 26.24	-2	3350071..3350211	-	46	206576663	-	KPK_3298	-	hypothetical protein
3239	 46.90	-1	3350431..3350850	+	139	206579793	-	KPK_3299	-	protein UmuD homolog
3240	 45.21	-1	3350853..3352115	+	420	206578700	-	KPK_3300	-	protein UmuC homolog
3241	 52.26	0	3352379..3352621	+	80	206579437	-	KPK_3301	-	putative virulence protein MsgA
3242	 54.30	0	3352792..3353931	-	379	206579719	-	KPK_3302	-	heptosyltransferase family protein
3243	 39.39	-2	3353954..3354118	-	54	206577455	-	KPK_3303	-	hypothetical protein
3244	 62.67	0	3354178..3354678	+	166	206577889	-	KPK_3305	-	YbaK/prolyl-tRNA synthetase-associated domain protein
3245	 47.97	-1	3354675..3354797	-	40	206575775	-	KPK_3304	-	hypothetical protein
3246	 59.73	0	3354796..3355242	+	148	206580661	-	KPK_3307	-	hypothetical protein
3247	 63.90	+1	3355226..3356020	-	264	206579707	-	KPK_3306	-	transcriptional regulator, AraC family
3248	 67.59	+1	3356118..3357302	+	394	206581024	-	KPK_3308	-	cyanate transporter, CynX family
3249	 63.92	+1	3357334..3358026	-	230	206580153	-	KPK_3309	-	class I glutamine amidotransferase family protein
3250	 66.47	+1	3358172..3358681	+	169	206576435	-	KPK_3310	-	hypothetical protein
3251	 62.50	0	3358665..3359024	+	119	206578030	-	KPK_3312	-	hypothetical protein
3252	 61.67	0	3359014..3359253	-	79	206576256	-	KPK_3311	-	putative lipoprotein
3253	 59.07	0	3359555..3360568	+	337	206577117	-	KPK_3313	-	GAF domain/diguanylate cyclase
3254	 52.90	0	3360590..3360727	+	45	206576530	-	KPK_3314	-	hypothetical protein
3255	 57.26	0	3360685..3360801	+	38	206575794	-	KPK_3315	-	hypothetical protein
3256	 46.03	-1	3360921..3361046	+	41	206578076	-	KPK_3316	-	putative lipoprotein
3257	 54.17	0	3361106..3361369	-	87	206579550	-	KPK_3317	-	hypothetical protein
3258	 57.12	0	3361500..3362138	-	212	206580490	leuE	KPK_3318	-	leucine export protein LeuE
3259	 55.74	0	3362228..3363142	-	304	206579913	-	KPK_3319	-	lipid A biosynthesis lauroyl acyltransferase family protein
3260	 35.26	-2	3363141..3363296	+	51	206577251	-	KPK_3320	-	hypothetical protein
3261	 59.00	0	3363799..3364842	-	347	206576960	ansB	KPK_3321	-	L-asparaginase 2
3262	 56.00	0	3365151..3366359	+	402	206579044	-	KPK_3322	-	putative metal-dependent phosphohydrolase
3263	 63.08	0	3366433..3368217	+	594	206578138	-	KPK_3323	-	putative membrane-bound diguanylate cyclase
3264	 61.84	0	3368224..3369114	-	296	206580822	-	KPK_3324	-	transcriptional regulator, LysR family
3265	 61.21	0	3369235..3370737	+	500	206579340	-	KPK_3325	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein
3266	 56.20	0	3370813..3371223	-	136	206575900	-	KPK_3326	-	hypothetical protein
3267	 48.51	-1	3371353..3372024	-	223	206580374	-	KPK_3327	-	cyclic diguanylate phosphodiesterase
3268	 55.10	0	3372455..3372601	-	48	206577091	-	KPK_3328	-	putative lipoprotein
3269	 58.29	0	3372674..3373306	-	210	206576499	-	KPK_3329	-	hypothetical protein
3270	 40.31	-2	3373398..3373526	-	42	206579457	-	KPK_3330	-	hypothetical protein
3271	 47.98	-1	3373879..3374076	+	65	206578854	-	KPK_3331	-	hypothetical protein
3272	 60.63	0	3374135..3374929	-	264	206580964	-	KPK_3332	-	transcriptional regulator, AraC family
3273	 57.25	0	3374944..3375081	-	45	206580378	-	KPK_3333	-	hypothetical protein
3274	 63.84	+1	3375007..3377058	+	683	206576309	-	KPK_3334	-	fusaric acid resistance domain protein
3275	 61.50	0	3377051..3377263	+	70	206575808	-	KPK_3335	-	hypothetical protein
3276	 64.17	+1	3377260..3378180	+	306	206580205	-	KPK_3337	-	auxiliary transport protein, membrane fusion protein (MFP) family
3277	 60.53	0	3378174..3379184	-	336	206577977	-	KPK_3336	-	putative cyanide-insensitive terminal oxidase CioB
3278	 58.71	0	3379181..3380587	-	468	206575836	-	KPK_3338	-	putative cyanide-insensitive terminal oxidase CioA
3279	 59.01	0	3380643..3381530	-	295	206576261	-	KPK_3339	-	putative manganese containing catalase
3280	 51.68	0	3381547..3382053	-	168	206577370	-	KPK_3340	-	hypothetical protein
3281	 46.46	-1	3382080..3382574	-	164	206577798	-	KPK_3341	-	hypothetical protein
3282	 53.23	0	3382664..3382849	-	61	206578863	-	KPK_3342	-	hypothetical protein
3283	 41.03	-2	3383233..3383349	-	38	206579278	-	KPK_3343	-	hypothetical protein
3284	 59.21	0	3383460..3384653	+	397	206577810	-	KPK_3344	-	oxidoreductase, zinc-binding dehydrogenase family
3285	 63.60	0	3384761..3384988	+	75	206577213	-	KPK_3345	-	hypothetical protein
3286	 54.76	0	3385043..3385588	-	181	206579609	-	KPK_3346	-	isochorismatase hydrolase family protein
3287	 51.27	0	3385913..3386386	+	157	206575716	-	KPK_3347	-	OsmC family protein
3288	 54.32	0	3386524..3386847	+	107	206579584	-	KPK_3348	-	antibiotic biosynthesis monooxygenase domain protein
3289	 54.96	0	3386840..3387232	+	130	206580057	-	KPK_3349	-	ACT domain protein
3290	 59.80	0	3387229..3387942	+	237	206577700	-	KPK_3350	-	transcriptional regulator, ArsR family
3291	 30.91	-2	3388156..3388320	+	54	206578291	-	KPK_3351	-	hypothetical protein
3292	 45.20	-1	3388750..3388926	-	58	206576448	-	KPK_3352	-	hypothetical protein
3293	 30.61	-2	3389972..3390118	-	48	206577479	-	KPK_3354	-	hypothetical protein
3294	 30.30	-2	3390301..3390993	-	230	206578094	-	KPK_3355	-	putative cyclic diguanylate phosphodiesterase
3295	 36.45	-2	3391350..3392408	-	352	206576280	-	KPK_3356	-	MASE2 domain/diguanylate cyclase
3296	 53.98	0	3392831..3393232	-	133	206577956	-	KPK_3357	-	hypothetical protein
3297	 58.09	0	3393186..3394724	-	512	206577426	-	KPK_3358	-	hypothetical protein
3298	 57.77	0	3394766..3395473	-	235	206579043	-	KPK_3359	-	putative phage tail assembly protein
3299	 54.27	0	3395476..3396225	-	249	206581121	-	KPK_3360	-	phage minor tail protein L
3300	 47.22	-1	3396318..3396677	-	119	206576679	-	KPK_3361	-	hypothetical protein
3301	 52.14	0	3396690..3397040	-	116	206575887	-	KPK_3362	-	phage minor tail protein
3302	 56.10	0	3397040..3397834	-	264	206576003	-	KPK_3363	-	putative major capsid protein
3303	 56.83	0	3398870..3400129	-	419	206579535	-	KPK_3365	-	phage portal protein, HK97 family
3304	 49.36	-1	3400302..3402023	-	573	206580362	-	KPK_3366	-	putative phage terminase, large subunit
3305	 52.64	0	3402023..3402457	-	144	206581076	-	KPK_3367	-	putative phage terminase, small subunit, P27 family
3306	 51.85	0	3402791..3403222	-	143	206579568	-	KPK_3368	-	hypothetical protein
3307	 53.27	0	3403222..3403542	-	106	206576851	-	KPK_3369	-	hypothetical protein
3308	 52.07	0	3403494..3403856	-	120	206580647	-	KPK_3370	-	HNH endonuclease domain protein
3309	 52.08	0	3405339..3405482	-	47	206575789	-	KPK_3371	-	hypothetical protein
3310	 51.28	0	3405457..3405807	-	116	206576526	-	KPK_3372	-	hypothetical protein
3311	 55.36	0	3405804..3406307	-	167	206576574	-	KPK_3373	-	phage lysozyme
3312	 52.34	0	3406279..3406620	-	113	206576544	-	KPK_3374	-	hypothetical protein
3313	 52.45	0	3407286..3407693	-	135	206580517	-	KPK_3375	-	hypothetical protein
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.