IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3167	 63.81	+1	3279499..3280059	+	186	206578419	-	KPK_3226	-	carboxymuconolactone decarboxylase family protein
3168	 67.85	+1	3280062..3281240	+	392	206577682	-	KPK_3227	-	hypothetical protein
3169	 70.70	+2	3281213..3282748	+	511	206576881	ynjC	KPK_3228	-	ABC transporter, permease protein
3170	 67.30	+1	3282748..3283380	+	210	206576056	-	KPK_3229	-	ABC transporter, ATP-binding protein
3171	 64.98	+1	3283474..3284781	+	435	206576763	-	KPK_3230	-	thiosulfate sulfurtransferase homolog
3172	 63.41	0	3284833..3285447	-	204	206580781	-	KPK_3231	-	CDP-alcohol phosphatidyltransferase family protein
3173	 62.53	0	3285534..3285944	+	136	206580030	nudG	KPK_3232	-	CTP pyrophosphohydrolase
3174	 41.27	-2	3286046..3286171	-	41	206579252	-	KPK_3233	-	hypothetical protein
3175	 61.53	0	3286127..3287470	+	447	206577927	gdhA	KPK_3234	-	NADP-specific glutamate dehydrogenase
3176	 61.26	0	3287514..3288494	-	326	206577278	-	KPK_3235	-	putative NAD(P)H quinone oxidoreductase, PIG3 family
3177	 61.68	0	3288665..3290611	-	648	206576648	topB	KPK_3236	-	DNA topoisomerase 3
3178	 62.74	0	3290616..3291659	-	347	206578560	selD	KPK_3237	-	selenide, water dikinase
3179	 60.24	0	3291885..3292631	+	248	206579129	-	KPK_3238	-	PAP2 family protein
3180	 63.77	+1	3293226..3293777	-	183	206578554	-	KPK_3239	-	nitroreductase family protein
3181	 59.17	0	3293943..3295796	+	617	206577621	sppA	KPK_3240	-	protease 4
3182	 59.22	0	3295935..3296954	+	339	206577004	ansA	KPK_3241	-	L-asparaginase 1
3183	 62.77	0	3296964..3297605	+	213	206576110	pncA	KPK_3242	-	pyrazinamidase/nicotinamidase
3184	 53.62	0	3299177..3299521	+	114	206579853	-	KPK_3244	-	HNH endonuclease domain protein
3185	 55.56	0	3299618..3299896	-	92	206579446	-	KPK_3245	-	hypothetical protein
3186	 55.56	0	3299940..3300353	-	137	206579931	msrB	KPK_3246	-	methionine-R-sulfoxide reductase
3187	 51.91	0	3300691..3301686	+	331	206580183	gapA	KPK_3247	-	gIyceraldehyde-3-phosphate dehydrogenase (phosphorylating)
3188	 58.64	0	3301761..3302645	+	294	206580933	-	KPK_3248	-	aldose 1-epimerase family protein
3189	 63.15	0	3302701..3303552	-	283	206575988	-	KPK_3249	-	oxidoreductase, aldo/keto reductase family
3190	 56.09	0	3303647..3304393	-	248	206576404	mipA	KPK_3250	-	MltA-interacting protein MipA
3191	 54.32	0	3304810..3306744	+	644	206577181	-	KPK_3251	-	serine protein kinase, PrkA family
3192	 56.31	0	3306830..3308113	+	427	206576223	-	KPK_3252	-	hypothetical protein
3193	 51.95	0	3308159..3308722	-	187	206579651	-	KPK_3253	-	putative lipoprotein
3194	 58.59	0	3308881..3309363	+	160	206577484	-	KPK_3254	-	glutathione peroxidase family protein
3195	 60.26	0	3309485..3309796	-	103	206580932	-	KPK_3255	-	antibiotic biosynthesis monooxygenase domain protein
3196	 62.16	0	3309902..3310789	-	295	206578680	-	KPK_3256	-	transcriptional regulator, LysR family
3197	 60.59	0	3310887..3311939	+	350	206578524	-	KPK_3257	-	NAD-dependent epimerase/dehydratase family protein
3198	 65.19	+1	3311949..3312830	-	293	206578426	-	KPK_3258	-	transcriptional regulator, LysR family
3199	 64.82	+1	3313006..3314196	+	396	206575943	-	KPK_3260	-	sugar efflux transporter SotB homolog
3200	 62.05	0	3314193..3315209	-	338	206577663	-	KPK_3259	-	acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
3201	 56.57	0	3315231..3315953	-	240	206576062	-	KPK_3261	-	glutamine ABC transporter, ATP-binding protein
3202	 49.16	-1	3315956..3316612	-	218	206579836	-	KPK_3262	-	glutamine ABC transporter, permease protein
3203	 47.68	-1	3316664..3317416	-	250	206576704	-	KPK_3263	-	glutamine ABC transporter, periplasmic glutamine-binding protein
3204	 56.22	0	3317544..3318098	-	184	206576664	-	KPK_3264	-	hypothetical protein
3205	 60.27	0	3318095..3319423	-	442	206576895	-	KPK_3265	-	aminotransferase, class III
3206	 55.59	0	3319552..3320409	-	285	206580578	-	KPK_3266	-	transcriptional regulator, RpiR family
3207	 57.34	0	3320636..3321643	+	335	206581137	-	KPK_3267	-	putative transcriptional regulator, AraC family
3208	 57.64	0	3321746..3322576	+	276	206578841	-	KPK_3268	-	NAD dependent epimerase/dehydratase family protein
3209	 63.03	0	3322590..3323525	-	311	206579537	-	KPK_3269	-	transcriptional regulator, LysR family
3210	 64.05	+1	3323626..3324735	+	369	206577289	-	KPK_3270	-	oxidoreductase, FAD/FMN-binding
3211	 58.17	0	3324732..3325331	+	199	206578063	-	KPK_3271	-	hypothetical protein
3212	 64.93	+1	3325422..3326171	-	249	206575864	-	KPK_3272	-	NAD dependent epimerase/dehydratase family protein
3213	 61.92	0	3326339..3327244	+	301	206576553	-	KPK_3273	-	transcriptional regulator, LysR family
3214	 54.07	0	3327645..3327890	+	81	206576678	-	KPK_3274	-	hypothetical protein
3215	 50.64	0	3328052..3328207	-	51	206577447	-	KPK_3275	-	hypothetical protein
3216	 58.24	0	3328206..3330899	+	897	206580515	mgtB	KPK_3276	-	magnesium-translocating P-type ATPase
3217	 44.44	-1	3330975..3331199	+	74	206577159	-	KPK_3277	-	hypothetical protein
3218	 61.10	0	3331214..3332866	+	550	206577879	-	KPK_3278	-	putative Na/Pi-cotransporter
3219	 55.07	0	3332932..3333276	+	114	206576284	-	KPK_3279	-	hypothetical protein
3220	 58.29	0	3333602..3334735	+	377	206577009	-	KPK_3280	-	putative tetracycline resistance protein
3221	 52.72	0	3334879..3335466	-	195	206580145	tetR	KPK_3281	-	tetracycline repressor protein class A from transposon 1721
3222	 40.91	-2	3335465..3335596	+	43	206580917	-	KPK_3282	-	hypothetical protein
3223	 55.58	0	3335633..3337075	+	480	206580631	-	KPK_3283	-	drug resistance MFS transporter, drug:H+ antiporter-1 (DHA2) family
3224	 60.94	0	3337198..3337983	-	261	206578725	-	KPK_3284	-	oxidoreductase, short chain dehydrogenase/reductase family
3225	 54.40	0	3338035..3338931	-	298	206579239	-	KPK_3285	-	transcriptional regulator, GntR family
3226	 57.56	0	3339124..3339936	+	270	206577215	-	KPK_3286	-	amino acid ABC transporter, periplasmic amino acid-binding protein
3227	 58.54	0	3339964..3340689	+	241	206577408	-	KPK_3287	-	amino acid ABC transporter, permease protein
3228	 58.97	0	3340686..3341426	+	246	206578157	-	KPK_3288	-	amino acid ABC transporter, ATP-binding protein
3229	 61.65	0	3341440..3342615	+	391	206576267	-	KPK_3289	-	peptidase, ArgE/DapE family
3230	 63.12	0	3342612..3343712	+	366	206577016	-	KPK_3290	-	mandelate racemase/muconate lactonizing enzyme family protein
3231	 60.85	0	3343699..3344868	+	389	206580547	-	KPK_3291	-	creatinase/peptidase, M24 family
3232	 61.04	0	3344879..3345802	+	307	206579420	-	KPK_3293	-	dihydrodipicolinate synthetase family protein
3233	 62.11	0	3345786..3346883	-	365	206578646	-	KPK_3292	-	CTP synthase family protein
3234	 58.89	0	3346952..3348160	+	402	206577490	aatA	KPK_3294	-	aspartate transaminase
3235	 49.36	-1	3348167..3348478	+	103	206578219	-	KPK_3295	-	hypothetical protein
3236	 40.43	-2	3348529..3349134	+	201	206576249	-	KPK_3296	-	transcriptional regulator, TetR family
3237	 46.59	-1	3349161..3349937	-	258	206576373	-	KPK_3297	-	hypothetical protein
3238	 26.24	-2	3350071..3350211	-	46	206576663	-	KPK_3298	-	hypothetical protein
3239	 46.90	-1	3350431..3350850	+	139	206579793	-	KPK_3299	-	protein UmuD homolog
3240	 45.21	-1	3350853..3352115	+	420	206578700	-	KPK_3300	-	protein UmuC homolog
3241	 52.26	0	3352379..3352621	+	80	206579437	-	KPK_3301	-	putative virulence protein MsgA
3242	 54.30	0	3352792..3353931	-	379	206579719	-	KPK_3302	-	heptosyltransferase family protein
3243	 39.39	-2	3353954..3354118	-	54	206577455	-	KPK_3303	-	hypothetical protein
3244	 62.67	0	3354178..3354678	+	166	206577889	-	KPK_3305	-	YbaK/prolyl-tRNA synthetase-associated domain protein
3245	 47.97	-1	3354675..3354797	-	40	206575775	-	KPK_3304	-	hypothetical protein
3246	 59.73	0	3354796..3355242	+	148	206580661	-	KPK_3307	-	hypothetical protein
3247	 63.90	+1	3355226..3356020	-	264	206579707	-	KPK_3306	-	transcriptional regulator, AraC family
3248	 67.59	+1	3356118..3357302	+	394	206581024	-	KPK_3308	-	cyanate transporter, CynX family
3249	 63.92	+1	3357334..3358026	-	230	206580153	-	KPK_3309	-	class I glutamine amidotransferase family protein
3250	 66.47	+1	3358172..3358681	+	169	206576435	-	KPK_3310	-	hypothetical protein
3251	 62.50	0	3358665..3359024	+	119	206578030	-	KPK_3312	-	hypothetical protein
3252	 61.67	0	3359014..3359253	-	79	206576256	-	KPK_3311	-	putative lipoprotein
3253	 59.07	0	3359555..3360568	+	337	206577117	-	KPK_3313	-	GAF domain/diguanylate cyclase
3254	 52.90	0	3360590..3360727	+	45	206576530	-	KPK_3314	-	hypothetical protein
3255	 57.26	0	3360685..3360801	+	38	206575794	-	KPK_3315	-	hypothetical protein
3256	 46.03	-1	3360921..3361046	+	41	206578076	-	KPK_3316	-	putative lipoprotein
3257	 54.17	0	3361106..3361369	-	87	206579550	-	KPK_3317	-	hypothetical protein
3258	 57.12	0	3361500..3362138	-	212	206580490	leuE	KPK_3318	-	leucine export protein LeuE
3259	 55.74	0	3362228..3363142	-	304	206579913	-	KPK_3319	-	lipid A biosynthesis lauroyl acyltransferase family protein
3260	 35.26	-2	3363141..3363296	+	51	206577251	-	KPK_3320	-	hypothetical protein
3261	 59.00	0	3363799..3364842	-	347	206576960	ansB	KPK_3321	-	L-asparaginase 2
3262	 56.00	0	3365151..3366359	+	402	206579044	-	KPK_3322	-	putative metal-dependent phosphohydrolase
3263	 63.08	0	3366433..3368217	+	594	206578138	-	KPK_3323	-	putative membrane-bound diguanylate cyclase
3264	 61.84	0	3368224..3369114	-	296	206580822	-	KPK_3324	-	transcriptional regulator, LysR family
3265	 61.21	0	3369235..3370737	+	500	206579340	-	KPK_3325	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase family protein
3266	 56.20	0	3370813..3371223	-	136	206575900	-	KPK_3326	-	hypothetical protein
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.