IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2922	 64.99	+1	3032024..3033394	+	456	206578022	-	KPK_2981	-	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
2923	 57.27	0	3033498..3034157	+	219	206576035	-	KPK_2982	-	O-methyltransferase family protein
2924	 50.47	0	3034258..3035109	-	283	206576607	-	KPK_2983	-	hypothetical protein
2925	 59.52	0	3035301..3039203	-	1300	206576016	hrpA	KPK_2984	-	ATP-dependent helicase HrpA
2926	 57.59	0	3039407..3040012	+	201	206576453	azoR	KPK_2985	-	FMN-dependent NADH-azoreductase
2927	 51.26	0	3040257..3040574	+	105	206576356	-	KPK_2986	-	hypothetical protein
2928	 55.09	0	3040590..3040874	+	94	206576777	-	KPK_2987	-	DNA-binding protein
2929	 58.29	0	3040907..3041503	-	198	206579257	paaY	KPK_2988	-	phenylacetic acid degradation protein PaaY
2930	 60.95	0	3041513..3042439	-	308	206578344	paaX	KPK_2989	-	phenylacetic acid degradation operon negative regulatory protein PaaX
2931	 58.01	0	3042539..3043855	-	438	206580790	paaK	KPK_2990	-	phenylacetate-CoA ligase PaaK
2932	 62.02	0	3043882..3045087	-	401	206578538	paaJ	KPK_2991	-	beta-ketoadipyl CoA thiolase PaaJ
2933	 56.97	0	3045087..3045509	-	140	206576838	paaI	KPK_2992	-	phenylacetic acid degradation protein PaaI
2934	 61.67	0	3045499..3046920	-	473	206580044	paaH	KPK_2993	-	3-hydroxybutyryl-CoA dehydrogenase PaaH
2935	 64.26	+1	3046924..3047712	-	262	206580657	paaG	KPK_2994	-	enoyl-CoA hydratase PaaG
2936	 62.37	0	3047715..3048482	-	255	206575863	paaF	KPK_2995	-	enoyl-CoA hydratase PaaF
2937	 61.62	0	3048479..3049549	-	356	206578773	paaE	KPK_2996	-	phenylacetate-CoA oxygenase, NAD(P)H oxidoreductase component PaaE
2938	 61.24	0	3049557..3050054	-	165	206580187	paaD	KPK_2997	-	phenylacetate-CoA oxygenase, gamma subunit
2939	 61.51	0	3050066..3050821	-	251	206578274	paaC	KPK_2998	-	phenylacetate-CoA oxygenase, beta subunit
2940	 54.86	0	3050829..3051116	-	95	206579005	paaB	KPK_2999	-	phenylacetate-CoA oxygenase, effector protein
2941	 60.54	0	3051128..3052057	-	309	206576257	paaA	KPK_3000	-	phenylacetyl-CoA oxygenase, alpha subunit
2942	 61.19	0	3052344..3054389	+	681	206577031	maoC	KPK_3001	-	phenylacetic acid degradation protein MaoC
2943	 57.98	0	3054884..3057151	+	755	206579926	tynA	KPK_3002	-	copper amine oxidase
2944	 66.87	+1	3057154..3058128	-	324	206580678	-	KPK_3003	-	zinc-containing alcohol dehydrogenase family protein
2945	 64.35	+1	3058151..3058969	-	272	206580924	-	KPK_3004	-	phytanoyl-CoA dioxygenase, PhyH family
2946	 66.33	+1	3058994..3060178	-	394	206578661	-	KPK_3005	-	putative acetylornithine deacetylase
2947	 66.67	+1	3060144..3060818	-	224	206575909	-	KPK_3006	-	hypothetical protein
2948	 59.31	0	3060815..3061249	-	144	206576666	-	KPK_3007	-	endoribonuclease L-PSP family protein
2949	 65.00	+1	3061274..3062533	-	419	206577498	-	KPK_3008	-	hypothetical protein
2950	 56.28	0	3062702..3063616	-	304	206578420	-	KPK_3009	-	transcriptional regulator, LysR family
2951	 28.67	-2	3063864..3064013	-	49	206579664	-	KPK_3010	-	hypothetical protein
2952	 59.70	0	3064105..3065625	+	506	206579195	-	KPK_3011	-	amino acid ABC transporter, permease/ATP-binding protein, His/Glu/Gln/Arg/opine family
2953	 64.26	+1	3065652..3066524	+	290	206579860	-	KPK_3012	-	phytanoyl-CoA dioxygenase (PhyH) family protein
2954	 58.60	0	3066548..3067378	+	276	206580801	-	KPK_3013	-	ABC transporter, periplasmic substrate-binding protein
2955	 62.70	0	3067384..3068115	+	243	206578169	-	KPK_3014	-	class II aldolase/adducin N-terminal domain protein
2956	 67.00	+1	3068134..3069024	-	296	206578066	-	KPK_3015	-	putative 2-dehydropantoate 2-reductase
2957	 65.67	+1	3069149..3070648	-	499	206580270	feaB	KPK_3016	-	phenylacetaldehyde dehydrogenase
2958	 53.97	0	3070680..3070805	-	41	206579727	-	KPK_3017	-	hypothetical protein
2959	 63.57	0	3070884..3071786	+	300	206575720	feaR	KPK_3018	-	transcriptional activator FeaR
2960	 63.89	+1	3071787..3072110	-	107	206581070	-	KPK_3019	-	hypothetical protein
2961	 49.46	-1	3072118..3072303	-	61	206577300	-	KPK_3020	-	putative lipoprotein
2962	 63.83	+1	3072300..3074939	-	879	206576542	-	KPK_3021	-	hypothetical protein
2963	 61.48	0	3075146..3075646	+	166	206579546	-	KPK_3022	-	DedA family protein
2964	 59.19	0	3075794..3076783	+	329	206578807	ldhA	KPK_3023	-	D-lactate dehydrogenase
2965	 59.41	0	3076906..3077346	+	146	206577569	hslJ	KPK_3024	-	heat shock protein HslJ
2966	 65.53	+1	3077392..3077655	-	87	206578308	-	KPK_3025	-	putative lipoprotein
2967	 61.82	0	3078018..3081545	+	1175	206575856	-	KPK_3026	-	putative pyruvate:ferredoxin (flavodoxin) oxidoreductase
2968	 38.76	-2	3081548..3081676	-	42	206576329	-	KPK_3027	-	hypothetical protein
2969	 52.71	0	3081904..3083028	+	374	206577055	ompN	KPK_3028	-	outer membrane protein N
2970	 48.83	-1	3083171..3083383	+	70	206576258	-	KPK_3029	-	hypothetical protein
2971	 54.71	0	3083466..3083900	+	144	206577899	uspF	KPK_3030	-	universal stress protein F
2972	 55.45	0	3084132..3085067	+	311	206578688	-	KPK_3031	-	PP-loop family protein
2973	 62.74	0	3085113..3086486	-	457	206576701	dbpA	KPK_3032	-	ATP-independent RNA helicase DbpA
2974	 61.59	0	3087012..3087995	-	327	206577499	zntB	KPK_3033	-	zinc transport protein ZntB
2975	 63.44	0	3088274..3089017	+	247	206576575	-	KPK_3034	-	transcriptional regulator, DeoR family
2976	 62.25	0	3089034..3090098	+	354	206576956	-	KPK_3035	-	oxidoreductase, NAD binding
2977	 48.21	-1	3090335..3090529	+	64	206576339	-	KPK_3036	-	hypothetical protein
2978	 52.40	0	3090645..3091394	-	249	206580736	-	KPK_3037	-	hypothetical protein
2979	 58.85	0	3091630..3093075	-	481	206580003	-	KPK_3038	-	putative aromatic amino acid transport protein AroP
2980	 57.92	0	3093341..3093820	+	159	206579258	-	KPK_3039	-	transcriptional regulator, AsnC family
2981	 56.10	0	3094071..3094685	+	204	206578530	-	KPK_3040	-	hypothetical protein
2982	 63.08	0	3094724..3095923	+	399	206578812	-	KPK_3041	-	putative aromatic-amino-acid transaminase
2983	 61.73	0	3095968..3096636	-	222	206578399	-	KPK_3042	-	ABC transporter, permease protein
2984	 55.82	0	3096629..3097642	-	337	206577331	-	KPK_3043	-	putative methionine ABC transporter, ATP-binding protein
2985	 51.82	0	3097651..3098310	-	219	206579171	-	KPK_3044	-	ABC transporter, periplasmic substrate-binding protein
2986	 61.82	0	3098677..3099852	+	391	206578295	-	KPK_3045	-	allinase
2987	 67.34	+1	3099900..3100934	-	344	206576262	-	KPK_3046	-	oxidoreductase, zinc-binding dehydrogenase family
2988	 66.85	+1	3101023..3101571	+	182	206576083	-	KPK_3047	-	transcriptional regulator, TetR family
2989	 67.00	+1	3101628..3102539	-	303	206575913	-	KPK_3048	-	NmrA family protein
2990	 62.83	0	3102539..3103399	-	286	206580940	-	KPK_3049	-	metallo-beta-lactamase domain protein
2991	 63.64	+1	3103490..3104413	+	307	206580170	-	KPK_3050	-	transcriptional regulator, LysR family
2992	 64.46	+1	3104433..3105338	-	301	206580580	-	KPK_3051	-	transcriptional regulator, LysR family
2993	 63.33	0	3105477..3106406	+	309	206578681	-	KPK_3052	-	NmrA family protein
2994	 56.04	0	3106432..3106638	+	68	206577701	-	KPK_3053	-	hypothetical protein
2995	 65.98	+1	3106689..3107567	-	292	206576354	-	KPK_3054	-	transcriptional regulator, AraC family
2996	 65.21	+1	3107726..3108481	+	251	206579078	-	KPK_3055	-	oxidoreductase, short chain dehydrogenase/reductase family
2997	 65.66	+1	3108486..3109079	-	197	206578176	-	KPK_3056	-	transcriptional regulator, TetR family
2998	 57.79	0	3109186..3111180	-	664	206580265	-	KPK_3057	-	putative lipoprotein
2999	 57.63	0	3111249..3111779	-	176	206578689	-	KPK_3058	-	putative lipoprotein
3000	 55.74	0	3111847..3112377	-	176	206575894	-	KPK_3059	-	putative lipoprotein
3001	 55.68	0	3112445..3112972	-	175	206576142	-	KPK_3060	-	putative lipoprotein
3002	 53.08	0	3113036..3113815	-	259	206578161	-	KPK_3061	-	hypothetical protein
3003	 62.36	0	3113816..3116185	-	789	206577667	-	KPK_3062	-	type VI secretion system Vgr family protein
3004	 64.26	+1	3116187..3118841	-	884	206578966	clpV	KPK_3063	-	type VI secretion ATPase, ClpV1 family
3005	 52.44	0	3119106..3119597	-	163	206577151	-	KPK_3064	-	type VI secretion system effector, Hcp1 family
3006	 64.79	+1	3119602..3121305	-	567	206579667	-	KPK_3065	-	OmpA domain protein
3007	 60.87	0	3121302..3121991	-	229	206579269	-	KPK_3066	-	type IV/VI secretion system protein, DotU family
3008	 61.90	0	3121988..3123331	-	447	206580867	-	KPK_3067	-	hypothetical protein
3009	 59.74	0	3123341..3124885	-	514	206580274	-	KPK_3068	-	type VI secretion protein, EvpB/VC_A0108 family
3010	 48.58	-1	3124928..3125419	-	163	206577610	-	KPK_3069	-	hypothetical protein
3011	 24.81	-2	3125473..3125601	+	42	206576640	-	KPK_3070	-	hypothetical protein
3012	 61.23	0	3126047..3126616	+	189	206578791	-	KPK_3071	-	intracellular protease, PfpI family
3013	 61.02	0	3126774..3127535	-	253	206577855	-	KPK_3072	-	oxidoreductase, short chain dehydrogenase/reductase family
3014	 64.37	+1	3127644..3128558	+	304	206580488	-	KPK_3073	-	transcriptional regulator, LysR family
3015	 47.62	-1	3128861..3129049	+	62	206576638	-	KPK_3074	-	hypothetical protein
3016	 54.78	0	3129103..3129573	-	156	206579264	-	KPK_3075	-	putative anti-sigma B factor
3017	 53.39	0	3129566..3129904	-	112	206578466	-	KPK_3076	-	anti-anti-sigma factor
3018	 58.52	0	3129894..3131108	-	404	206581136	-	KPK_3077	-	response regulator
3019	 53.00	0	3131117..3132016	-	299	206579861	-	KPK_3078	-	hypothetical protein
3020	 51.56	0	3132027..3133244	-	405	206576840	-	KPK_3079	-	hypothetical protein
3021	 57.59	0	3133521..3135338	+	605	206576278	-	KPK_3080	-	glycosyl transferase, group 2 family protein
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.