IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2848	 57.10	0	2952178..2953128	-	316	206577885	-	KPK_2905	-	ApbE family protein
2849	 60.15	0	2953343..2956120	-	925	206579736	-	KPK_2907	-	oxidoreductase, FAD/FMN-binding/flavocytochrome c
2850	 60.26	0	2956837..2958273	+	478	206580203	-	KPK_2908	-	putative tartrate carrier
2851	 59.47	0	2958328..2959980	+	550	206575969	fumB	KPK_2909	-	fumarate hydratase
2852	 61.90	0	2960145..2961761	+	538	206576567	-	KPK_2910	-	transporter, small conductance mechanosensitive ion channel (MscS) family
2853	 59.49	0	2962271..2962660	-	129	206577204	pcaC	KPK_2911	-	4-carboxymuconolactone decarboxylase
2854	 62.45	0	2962650..2963456	-	268	206577802	pcaD	KPK_2912	-	3-oxoadipate enol-lactonase
2855	 66.74	+1	2963407..2964759	-	450	206575977	pcaB	KPK_2913	-	3-carboxy-cis,cis-muconate cycloisomerase
2856	 65.75	+1	2964769..2965971	-	400	206580178	pcaF	KPK_2914	-	beta-ketoadipyl CoA thiolase
2857	 62.25	0	2965982..2966638	-	218	206578485	pcaJ	KPK_2915	-	3-oxoadipate CoA-transferase, subunit B
2858	 62.15	0	2966649..2967335	-	228	206579270	pcaI	KPK_2916	-	3-oxoadipate CoA-transferase, subunit A
2859	 64.44	+1	2967505..2968311	+	268	206580726	pcaR	KPK_2918	-	Pca regulon regulatory protein
2860	 60.64	0	2968308..2968871	-	187	206580031	-	KPK_2917	-	Smr domain protein
2861	 58.58	0	2968972..2969898	-	308	206576079	-	KPK_2919	-	putative HTH-type transcriptional regulator abgR
2862	 67.28	+1	2970047..2971357	+	436	206576915	abgA	KPK_2920	-	aminobenzoyl-glutamate utilization protein A
2863	 63.14	0	2971357..2972802	+	481	206577698	abgB	KPK_2921	-	aminobenzoyl-glutamate utilization protein B
2864	 60.12	0	2972926..2974452	+	508	206577128	abgT	KPK_2922	-	aminobenzoyl-glutamate transport protein
2865	 46.54	-1	2974485..2974643	-	52	206578001	-	KPK_2923	-	hypothetical protein
2866	 62.79	0	2974901..2975416	+	171	206577143	ogt	KPK_2924	-	methylated-DNA--protein-cysteine methyltransferase
2867	 54.18	0	2975611..2976363	+	250	206579764	fnr	KPK_2925	-	fumarate and nitrate reduction regulatory protein
2868	 56.47	0	2976502..2977452	+	316	206578568	uspE	KPK_2926	-	universal stress protein E
2869	 51.35	0	2977570..2977791	-	73	206577909	-	KPK_2927	-	hypothetical protein
2870	 58.10	0	2977907..2979295	-	462	206577378	-	KPK_2928	-	NAD(P) transhydrogenase, beta subunit
2871	 57.99	0	2979306..2980850	-	514	206576623	pntA	KPK_2929	-	NAD(P) transhydrogenase, alpha subunit
2872	 40.17	-2	2981033..2981149	+	38	206580972	-	KPK_2930	-	hypothetical protein
2873	 37.98	-2	2981169..2981297	-	42	206580175	-	KPK_2931	-	hypothetical protein
2874	 58.25	0	2981357..2982307	+	316	206579013	-	KPK_2933	-	hypothetical protein
2875	 51.77	0	2982285..2982425	-	46	206579761	-	KPK_2932	-	hypothetical protein
2876	 60.59	0	2982485..2983867	+	460	206580268	arcD	KPK_2934	-	arginine/ornithine antiporter
2877	 61.27	0	2983904..2984626	+	240	206579077	-	KPK_2936	-	oxidoreductase, short chain dehydrogenase/reductase family
2878	 57.44	0	2984623..2984958	-	111	206579715	-	KPK_2935	-	hypothetical protein
2879	 60.30	0	2985087..2985809	+	240	206580883	rstA	KPK_2937	-	transcriptional regulatory protein RstA
2880	 54.27	0	2986062..2986424	+	120	206580244	-	KPK_2938	-	hypothetical protein
2881	 58.68	0	2987284..2988585	+	433	206578165	rstB	KPK_2940	-	sensor protein RstB
2882	 61.84	0	2988660..2989592	+	310	206579273	tus	KPK_2942	-	DNA replication terminus site-binding protein
2883	 61.03	0	2989582..2990982	-	466	206577154	fumC	KPK_2941	-	fumarate hydratase
2884	 58.89	0	2991320..2992966	-	548	206580526	fumA	KPK_2943	-	fumarate hydratase
2885	 61.58	0	2993168..2994346	+	392	206576919	manA	KPK_2944	-	mannose-6-phosphate isomerase, class I
2886	 60.32	0	2994434..2995993	+	519	206575877	-	KPK_2945	-	hypothetical protein
2887	 65.50	+1	2996033..2997061	-	342	206576467	malI	KPK_2946	-	maltose regulon regulatory protein MalI
2888	 60.26	0	2997235..2998827	+	530	206580405	malX	KPK_2947	-	PTS system, maltose and glucose-specific IIBC component
2889	 62.66	0	2998880..3000052	+	390	206581028	malY	KPK_2948	-	MalY protein
2890	 59.77	0	3000066..3001094	-	342	206578936	-	KPK_2949	-	Mg2+ transporter, CorA family
2891	 50.00	-1	3001091..3001318	-	75	206579520	-	KPK_2950	-	hypothetical protein
2892	 53.92	0	3001394..3001597	+	67	206579157	-	KPK_2951	-	hypothetical protein
2893	 48.55	-1	3001667..3002185	-	172	206577364	-	KPK_2952	-	hypothetical protein
2894	 64.41	+1	3002383..3002736	+	117	206578401	-	KPK_2953	-	hypothetical protein
2895	 62.71	0	3002840..3004051	+	403	206578214	-	KPK_2954	-	hypothetical protein
2896	 52.99	0	3004048..3004281	+	77	206578753	-	KPK_2955	-	hypothetical protein
2897	 55.73	0	3004542..3004934	+	130	206578278	-	KPK_2956	-	hypothetical protein
2898	 53.46	0	3004973..3005131	-	52	206578641	-	KPK_2957	-	hypothetical protein
2899	 57.56	0	3005414..3006412	+	332	206577077	gapC	KPK_2958	-	glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)
2900	 61.88	0	3006461..3007900	-	479	206577470	aldA	KPK_2959	-	aldehyde dehydrogenase A
2901	 47.83	-1	3007899..3008036	+	45	206579935	-	KPK_2960	-	hypothetical protein
2902	 68.41	+1	3008098..3008898	-	266	206580552	-	KPK_2961	-	hypothetical protein
2903	 60.71	0	3009279..3010604	+	441	206578764	-	KPK_2962	-	transporter, major facilitator family
2904	 60.87	0	3010815..3012245	-	476	206579336	-	KPK_2963	-	D-serine/D-alanine/glycine transporter
2905	 66.27	+1	3012255..3013250	-	331	206580093	-	KPK_2964	-	putative succinylglutamate desuccinylase
2906	 63.39	0	3013261..3014601	-	446	206579138	-	KPK_2965	-	putative succinylarginine dihydrolase
2907	 66.05	+1	3014623..3016089	-	488	206579835	-	KPK_2966	-	putative succinylglutamic semialdehyde dehydrogenase
2908	 62.48	0	3016080..3017105	-	341	206579403	-	KPK_2967	-	putative arginine N-succinyltransferase
2909	 63.44	0	3017121..3018329	-	402	206575932	-	KPK_2968	-	putative succinylornithine transaminase
2910	 59.69	0	3018855..3020129	+	424	206580928	-	KPK_2969	-	putative glutamate dehydrogenase
2911	 62.08	0	3020194..3020847	-	217	206577466	-	KPK_2970	-	HAD hydrolase, IB family, TIGR01490
2912	 54.71	0	3020828..3021613	-	261	206577014	-	KPK_2971	-	hypothetical protein
2913	 65.17	+1	3021627..3022832	-	401	206577788	-	KPK_2972	-	acetyl-CoA acetyltransferase
2914	 58.45	0	3022835..3024319	-	494	206577183	-	KPK_2973	-	FAD-binding lipoprotein
2915	 59.44	0	3024381..3025445	-	354	206578271	-	KPK_2974	-	oxidoreductase, aldo/keto reductase family
2916	 58.75	0	3025442..3026629	-	395	206577694	-	KPK_2975	-	transporter, major facilitator family
2917	 56.66	0	3026679..3027677	-	332	206580140	-	KPK_2976	-	oxidoreductase, aldo/keto reductase family
2918	 52.57	0	3027778..3028692	+	304	206581096	-	KPK_2977	-	transcriptional regulator, LysR family
2919	 61.57	0	3028830..3029261	+	143	206579071	-	KPK_2978	-	transcriptional regulator, MarR family
2920	 61.58	0	3029261..3030913	+	550	206579807	-	KPK_2979	-	transporter, major facilitator family
2921	 61.51	0	3030942..3032027	+	361	206577106	-	KPK_2980	-	auxiliary transport protein, membrane fusion protein (MFP) family
2922	 64.99	+1	3032024..3033394	+	456	206578022	-	KPK_2981	-	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
2923	 57.27	0	3033498..3034157	+	219	206576035	-	KPK_2982	-	O-methyltransferase family protein
2924	 50.47	0	3034258..3035109	-	283	206576607	-	KPK_2983	-	hypothetical protein
2925	 59.52	0	3035301..3039203	-	1300	206576016	hrpA	KPK_2984	-	ATP-dependent helicase HrpA
2926	 57.59	0	3039407..3040012	+	201	206576453	azoR	KPK_2985	-	FMN-dependent NADH-azoreductase
2927	 51.26	0	3040257..3040574	+	105	206576356	-	KPK_2986	-	hypothetical protein
2928	 55.09	0	3040590..3040874	+	94	206576777	-	KPK_2987	-	DNA-binding protein
2929	 58.29	0	3040907..3041503	-	198	206579257	paaY	KPK_2988	-	phenylacetic acid degradation protein PaaY
2930	 60.95	0	3041513..3042439	-	308	206578344	paaX	KPK_2989	-	phenylacetic acid degradation operon negative regulatory protein PaaX
2931	 58.01	0	3042539..3043855	-	438	206580790	paaK	KPK_2990	-	phenylacetate-CoA ligase PaaK
2932	 62.02	0	3043882..3045087	-	401	206578538	paaJ	KPK_2991	-	beta-ketoadipyl CoA thiolase PaaJ
2933	 56.97	0	3045087..3045509	-	140	206576838	paaI	KPK_2992	-	phenylacetic acid degradation protein PaaI
2934	 61.67	0	3045499..3046920	-	473	206580044	paaH	KPK_2993	-	3-hydroxybutyryl-CoA dehydrogenase PaaH
2935	 64.26	+1	3046924..3047712	-	262	206580657	paaG	KPK_2994	-	enoyl-CoA hydratase PaaG
2936	 62.37	0	3047715..3048482	-	255	206575863	paaF	KPK_2995	-	enoyl-CoA hydratase PaaF
2937	 61.62	0	3048479..3049549	-	356	206578773	paaE	KPK_2996	-	phenylacetate-CoA oxygenase, NAD(P)H oxidoreductase component PaaE
2938	 61.24	0	3049557..3050054	-	165	206580187	paaD	KPK_2997	-	phenylacetate-CoA oxygenase, gamma subunit
2939	 61.51	0	3050066..3050821	-	251	206578274	paaC	KPK_2998	-	phenylacetate-CoA oxygenase, beta subunit
2940	 54.86	0	3050829..3051116	-	95	206579005	paaB	KPK_2999	-	phenylacetate-CoA oxygenase, effector protein
2941	 60.54	0	3051128..3052057	-	309	206576257	paaA	KPK_3000	-	phenylacetyl-CoA oxygenase, alpha subunit
2942	 61.19	0	3052344..3054389	+	681	206577031	maoC	KPK_3001	-	phenylacetic acid degradation protein MaoC
2943	 57.98	0	3054884..3057151	+	755	206579926	tynA	KPK_3002	-	copper amine oxidase
2944	 66.87	+1	3057154..3058128	-	324	206580678	-	KPK_3003	-	zinc-containing alcohol dehydrogenase family protein
2945	 64.35	+1	3058151..3058969	-	272	206580924	-	KPK_3004	-	phytanoyl-CoA dioxygenase, PhyH family
2946	 66.33	+1	3058994..3060178	-	394	206578661	-	KPK_3005	-	putative acetylornithine deacetylase
2947	 66.67	+1	3060144..3060818	-	224	206575909	-	KPK_3006	-	hypothetical protein
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.