IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2786	 34.87	-2	2896595..2897050	-	151	206576999	-	KPK_2844	-	hypothetical protein
2787	 55.05	0	2897106..2897570	-	154	206576689	-	KPK_2845	-	bacteriophage lysis protein
2788	 53.54	0	2897567..2898046	-	159	206576793	-	KPK_2846	-	phage lysozyme
2789	 52.16	0	2898030..2898353	-	107	206579691	-	KPK_2847	-	phage holin, lambda family
2790	 33.98	-2	2898563..2898871	-	102	206578684	-	KPK_2848	-	hypothetical protein
2791	 35.66	-2	2898947..2899633	+	228	206577521	-	KPK_2849	-	hypothetical protein
2792	 42.53	-2	2899828..2900088	-	86	206579154	-	KPK_2850	-	hypothetical protein
2793	 48.87	-1	2900233..2901030	-	265	206577129	-	KPK_2851	-	antitermination protein
2794	 49.28	-1	2901027..2901164	-	45	206580314	-	KPK_2852	-	hypothetical protein
2795	 50.42	0	2901161..2901517	-	118	206580395	-	KPK_2853	-	crossover junction endodeoxyribonuclease RusA family protein
2796	 59.06	0	2901514..2901894	-	126	206581003	-	KPK_2854	-	hypothetical protein
2797	 53.27	0	2902019..2902615	-	198	206578034	-	KPK_2855	-	hypothetical protein
2798	 48.72	-1	2902651..2902884	-	77	206579490	-	KPK_2856	-	hypothetical protein
2799	 39.56	-2	2903580..2903852	-	90	206578267	-	KPK_2857	-	putative colicin-D immunity protein
2800	 46.51	-1	2904230..2904358	-	42	206577420	-	KPK_2858	-	hypothetical protein
2801	 33.80	-2	2904462..2905310	-	282	206578035	-	KPK_2859	-	HNH endonuclease domain protein
2802	 58.72	0	2905357..2906928	-	523	206575823	-	KPK_2860	-	putative DNA modification methylase
2803	 55.37	0	2907076..2907429	+	117	206576460	-	KPK_2861	-	hypothetical protein
2804	 50.78	0	2907489..2907746	+	85	206576188	-	KPK_2862	-	hypothetical protein
2805	 47.46	-1	2907727..2908866	+	379	206578665	-	KPK_2863	-	site-specific recombinase, phage integrase family
2806	 59.87	0	2909016..2911061	-	681	206579681	dcp	KPK_2864	-	peptidyl-dipeptidase Dcp
2807	 59.33	0	2911192..2911941	+	249	206577359	-	KPK_2865	-	NADP-dependent l-serine/l-allo-threonine dehydrogenase ydfg
2808	 54.44	0	2912033..2912719	+	228	206577981	-	KPK_2866	-	transcriptional regulator, GntR family
2809	 49.77	-1	2912771..2913202	-	143	206580858	-	KPK_2867	-	universal stress family protein
2810	 62.70	0	2913469..2914932	-	487	206579109	-	KPK_2868	-	mannitol dehydrogenase family protein
2811	 59.89	0	2915219..2916502	-	427	206580438	-	KPK_2869	-	transporter, major facilitator family
2812	 64.83	+1	2916617..2916943	-	108	206581016	-	KPK_2870	-	hypothetical protein
2813	 59.94	0	2917088..2917429	+	113	206575862	-	KPK_2871	-	hypothetical protein
2814	 51.34	0	2917508..2918068	+	186	206578825	-	KPK_2873	-	acetyltransferase, GNAT family
2815	 56.82	0	2918062..2918772	-	236	206576406	-	KPK_2872	-	putative lipoprotein
2816	 56.30	0	2918874..2919143	+	89	206579321	-	KPK_2874	-	hypothetical protein
2817	 59.81	0	2919294..2921729	+	811	206576594	-	KPK_2875	-	anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family
2818	 60.36	0	2921740..2922357	+	205	206575826	dmsB_1	KPK_2876	-	anaerobic dimethyl sulfoxide reductase, B subunit
2819	 60.26	0	2922359..2923216	+	285	206581109	-	KPK_2877	-	putative anaerobic dimethyl sulfoxide reductase, C subunit
2820	 65.35	+1	2923258..2923866	+	202	206580367	dmsD	KPK_2878	-	twin-arginine leader-binding protein DmsD
2821	 64.68	+1	2924036..2925295	+	419	206580961	-	KPK_2880	-	chloride transporter, chloride channel (ClC) family
2822	 60.06	0	2925248..2925943	-	231	206579022	-	KPK_2879	-	putative dethiobiotin synthase
2823	 57.76	0	2926071..2927294	-	407	206577523	mic	KPK_2881	-	transcriptional regulator Mic
2824	 61.46	0	2927416..2928318	-	300	206577260	-	KPK_2882	-	transcriptional regulator, LysR family
2825	 61.47	0	2928449..2929699	+	416	206579551	-	KPK_2883	-	transporter, major facilitator family
2826	 50.88	0	2929730..2929843	-	37	206579104	-	KPK_2884	-	hypothetical protein
2827	 62.16	0	2930039..2931526	+	495	206576211	-	KPK_2885	-	carboxypeptidase family protein
2828	 52.96	0	2931714..2932085	-	123	206576899	-	KPK_2886	-	hypothetical protein
2829	 52.71	0	2932295..2932423	-	42	206577463	-	KPK_2887	-	hypothetical protein
2830	 51.28	0	2932473..2932589	-	38	206575987	-	KPK_2888	-	hypothetical protein
2831	 59.41	0	2933059..2933871	+	270	206578736	-	KPK_2889	-	peptidase, S1A (chymotrypsin) family
2832	 61.01	0	2933872..2936028	-	718	206579319	-	KPK_2890	-	diguanylate cyclase/cyclic diguanylate phosphodiesterase
2833	 60.91	0	2936136..2936465	-	109	206579969	mdtI	KPK_2891	-	multidrug resistance protein MdtI
2834	 48.21	-1	2936452..2936814	-	120	206580546	mdtJ	KPK_2892	-	multidrug resistance protein MdtJ
2835	 56.18	0	2937166..2938290	+	374	206580879	ydgG	KPK_2893	-	inner membrane protein YdgG
2836	 60.08	0	2938516..2940171	+	551	206577230	mdcA	KPK_2894	-	malonate decarboxylase, alpha subunit
2837	 68.56	+1	2940171..2941013	+	280	206578901	mdcB	KPK_2895	-	triphosphoribosyl-dephospho-CoA synthase MdcB
2838	 58.00	0	2941031..2941330	+	99	206580998	mdcC	KPK_2896	-	malonate decarboxylase, delta subunit
2839	 62.35	0	2941323..2942156	+	277	206580131	mdcD	KPK_2897	-	malonate decarboxylase, beta subunit
2840	 64.67	+1	2942156..2942956	+	266	206576856	mdcE	KPK_2898	-	malonate decarboxylase, gamma subunit
2841	 59.58	0	2943093..2944052	+	319	206578382	mdcF	KPK_2899	-	malonate transporter MdcF
2842	 66.99	+1	2944056..2944673	+	205	206577640	mdcG	KPK_2900	-	holo-ACP synthase, malonate decarboxylase-specific
2843	 56.85	0	2945565..2946491	-	308	206577180	-	KPK_2901	-	malonate utilization transcriptional regulator MdcR
2844	 57.55	0	2946650..2948305	-	551	206579170	mqo	KPK_2902	-	malate dehydrogenase (acceptor)
2845	 64.29	+1	2948568..2949491	-	307	206579786	-	KPK_2903	-	hypothetical protein
2846	 59.93	0	2949865..2951481	+	538	206577096	dcuS	KPK_2904	-	sensor protein DcuS
2847	 58.61	0	2951478..2952197	+	239	206578982	dcuR	KPK_2906	-	transcriptional regulatory protein DcuR
2848	 57.10	0	2952178..2953128	-	316	206577885	-	KPK_2905	-	ApbE family protein
2849	 60.15	0	2953343..2956120	-	925	206579736	-	KPK_2907	-	oxidoreductase, FAD/FMN-binding/flavocytochrome c
2850	 60.26	0	2956837..2958273	+	478	206580203	-	KPK_2908	-	putative tartrate carrier
2851	 59.47	0	2958328..2959980	+	550	206575969	fumB	KPK_2909	-	fumarate hydratase
2852	 61.90	0	2960145..2961761	+	538	206576567	-	KPK_2910	-	transporter, small conductance mechanosensitive ion channel (MscS) family
2853	 59.49	0	2962271..2962660	-	129	206577204	pcaC	KPK_2911	-	4-carboxymuconolactone decarboxylase
2854	 62.45	0	2962650..2963456	-	268	206577802	pcaD	KPK_2912	-	3-oxoadipate enol-lactonase
2855	 66.74	+1	2963407..2964759	-	450	206575977	pcaB	KPK_2913	-	3-carboxy-cis,cis-muconate cycloisomerase
2856	 65.75	+1	2964769..2965971	-	400	206580178	pcaF	KPK_2914	-	beta-ketoadipyl CoA thiolase
2857	 62.25	0	2965982..2966638	-	218	206578485	pcaJ	KPK_2915	-	3-oxoadipate CoA-transferase, subunit B
2858	 62.15	0	2966649..2967335	-	228	206579270	pcaI	KPK_2916	-	3-oxoadipate CoA-transferase, subunit A
2859	 64.44	+1	2967505..2968311	+	268	206580726	pcaR	KPK_2918	-	Pca regulon regulatory protein
2860	 60.64	0	2968308..2968871	-	187	206580031	-	KPK_2917	-	Smr domain protein
2861	 58.58	0	2968972..2969898	-	308	206576079	-	KPK_2919	-	putative HTH-type transcriptional regulator abgR
2862	 67.28	+1	2970047..2971357	+	436	206576915	abgA	KPK_2920	-	aminobenzoyl-glutamate utilization protein A
2863	 63.14	0	2971357..2972802	+	481	206577698	abgB	KPK_2921	-	aminobenzoyl-glutamate utilization protein B
2864	 60.12	0	2972926..2974452	+	508	206577128	abgT	KPK_2922	-	aminobenzoyl-glutamate transport protein
2865	 46.54	-1	2974485..2974643	-	52	206578001	-	KPK_2923	-	hypothetical protein
2866	 62.79	0	2974901..2975416	+	171	206577143	ogt	KPK_2924	-	methylated-DNA--protein-cysteine methyltransferase
2867	 54.18	0	2975611..2976363	+	250	206579764	fnr	KPK_2925	-	fumarate and nitrate reduction regulatory protein
2868	 56.47	0	2976502..2977452	+	316	206578568	uspE	KPK_2926	-	universal stress protein E
2869	 51.35	0	2977570..2977791	-	73	206577909	-	KPK_2927	-	hypothetical protein
2870	 58.10	0	2977907..2979295	-	462	206577378	-	KPK_2928	-	NAD(P) transhydrogenase, beta subunit
2871	 57.99	0	2979306..2980850	-	514	206576623	pntA	KPK_2929	-	NAD(P) transhydrogenase, alpha subunit
2872	 40.17	-2	2981033..2981149	+	38	206580972	-	KPK_2930	-	hypothetical protein
2873	 37.98	-2	2981169..2981297	-	42	206580175	-	KPK_2931	-	hypothetical protein
2874	 58.25	0	2981357..2982307	+	316	206579013	-	KPK_2933	-	hypothetical protein
2875	 51.77	0	2982285..2982425	-	46	206579761	-	KPK_2932	-	hypothetical protein
2876	 60.59	0	2982485..2983867	+	460	206580268	arcD	KPK_2934	-	arginine/ornithine antiporter
2877	 61.27	0	2983904..2984626	+	240	206579077	-	KPK_2936	-	oxidoreductase, short chain dehydrogenase/reductase family
2878	 57.44	0	2984623..2984958	-	111	206579715	-	KPK_2935	-	hypothetical protein
2879	 60.30	0	2985087..2985809	+	240	206580883	rstA	KPK_2937	-	transcriptional regulatory protein RstA
2880	 54.27	0	2986062..2986424	+	120	206580244	-	KPK_2938	-	hypothetical protein
2881	 58.68	0	2987284..2988585	+	433	206578165	rstB	KPK_2940	-	sensor protein RstB
2882	 61.84	0	2988660..2989592	+	310	206579273	tus	KPK_2942	-	DNA replication terminus site-binding protein
2883	 61.03	0	2989582..2990982	-	466	206577154	fumC	KPK_2941	-	fumarate hydratase
2884	 58.89	0	2991320..2992966	-	548	206580526	fumA	KPK_2943	-	fumarate hydratase
2885	 61.58	0	2993168..2994346	+	392	206576919	manA	KPK_2944	-	mannose-6-phosphate isomerase, class I
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.