IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2684	 58.82	0	2794345..2795796	-	483	206577732	uxaB	KPK_2739	-	tagaturonate reductase
2685	 59.51	0	2795910..2796440	-	176	206580894	-	KPK_2740	-	acetyltransferase, GNAT family
2686	 57.47	0	2796518..2797942	-	474	206576174	-	KPK_2741	-	putative membrane-bound diguanylate cyclase
2687	 61.79	0	2798057..2798425	-	122	206578732	-	KPK_2742	-	hypothetical protein
2688	 61.49	0	2798425..2799351	-	308	206580769	-	KPK_2743	-	glutaminase
2689	 65.51	+1	2799433..2800818	-	461	206577177	-	KPK_2744	-	aldehyde dehydrogenase (NAD) family protein
2690	 63.94	+1	2800925..2801803	+	292	206576387	-	KPK_2746	-	transcriptional regulator, LysR family
2691	 61.70	0	2801757..2802239	-	160	206579666	-	KPK_2745	-	acetyltransferase, GNAT family
2692	 62.65	0	2802385..2803329	+	314	206578175	-	KPK_2747	-	L-lactate dehydrogenase
2693	 60.76	0	2803344..2804105	-	253	206580138	-	KPK_2748	-	transcriptional regulator, DeoR family
2694	 62.21	0	2804107..2805093	-	328	206580903	-	KPK_2749	-	putative 4-hydroxythreonine-4-phosphate dehydrogenase
2695	 65.37	+1	2805086..2806321	-	411	206579093	-	KPK_2750	-	hypothetical protein
2696	 63.97	+1	2806497..2807645	+	382	206579175	-	KPK_2751	-	putative 5-hydroxyvalerate dehydrogenase
2697	 59.89	0	2807659..2808543	+	294	206578070	-	KPK_2752	-	putative dihydrodipicolinate synthase
2698	 49.21	-1	2808629..2809579	+	316	206575919	gyaR	KPK_2753	-	glyoxylate reductase
2699	 48.41	-1	2809643..2810962	+	439	206580292	-	KPK_2754	-	transporter, major facilitator family
2700	 61.26	0	2811008..2811802	-	264	206580890	-	KPK_2755	-	phenazine biosynthesis protein PhzF family
2701	 58.75	0	2812004..2813203	+	399	206580975	sotB	KPK_2756	-	sugar efflux transporter SotB
2702	 56.05	0	2813274..2813942	-	222	206579017	marC	KPK_2757	-	multiple antibiotic resistance protein MarC
2703	 54.71	0	2814204..2814638	+	144	206576176	marR	KPK_2758	-	multiple antibiotic resistance protein MarR
2704	 50.93	0	2814658..2815032	+	124	206576805	marA	KPK_2759	-	multiple antibiotic resistance protein MarA
2705	 51.60	0	2815073..2815291	+	72	206577753	marB	KPK_2760	-	multiple antibiotic resistance protein MarB
2706	 61.44	0	2815338..2816237	-	299	206577253	eamA	KPK_2761	-	transporter, 10 TMS drug/metabolite exporter (DME) family
2707	 59.72	0	2816432..2817625	+	397	206578479	-	KPK_2762	-	transporter, major facilitator family
2708	 63.77	+1	2817755..2818237	+	160	206579409	-	KPK_2763	-	DNA-binding protein
2709	 63.66	+1	2818273..2818971	-	232	206579976	urtE	KPK_2764	-	urea ABC transporter, ATP-binding protein UrtE
2710	 61.90	0	2818981..2819778	-	265	206580895	urtD	KPK_2765	-	urea ABC transporter, ATP-binding protein UrtD
2711	 63.87	+1	2819778..2820851	-	357	206576241	urtC	KPK_2766	-	urea ABC transporter, permease protein UrtC
2712	 64.95	+1	2820851..2822425	-	524	206577028	urtB	KPK_2767	-	urea ABC transporter, permease protein UrtB
2713	 58.10	0	2822487..2823758	-	423	206578033	urtA	KPK_2768	-	urea ABC transporter, urea binding protein
2714	 61.05	0	2823929..2825032	-	367	206577395	-	KPK_2769	-	methionine synthase, vitamin-B12 independent family protein
2715	 63.16	0	2825181..2825579	-	132	206577761	-	KPK_2770	-	hypothetical protein
2716	 64.75	+1	2825647..2826744	+	365	206579529	-	KPK_2771	-	transcriptional regulator, AraC family
2717	 56.48	0	2826713..2826928	+	71	206580572	-	KPK_2772	-	hypothetical protein
2718	 56.69	0	2826981..2827421	-	146	206580426	-	KPK_2773	-	acetyltransferase, GNAT family
2719	 66.48	+1	2827687..2828751	-	354	206576645	lacI	KPK_2774	-	lactose operon repressor
2720	 41.46	-2	2828773..2828895	+	40	206575729	-	KPK_2775	-	hypothetical protein
2721	 63.90	+1	2828948..2832055	+	1035	206577397	lacZ	KPK_2776	-	beta-galactosidase
2722	 55.69	0	2832110..2833375	+	421	206579375	lacY	KPK_2777	-	lactose permease
2723	 60.42	0	2833404..2834492	-	362	206576343	-	KPK_2778	-	RecF/RecN/SMC N-terminal domain protein
2724	 55.17	0	2834579..2834839	-	86	206577134	-	KPK_2779	-	hypothetical protein
2725	 64.69	+1	2835134..2835994	+	286	206577539	-	KPK_2780	-	beta-lactamase
2726	 60.24	0	2836012..2836773	-	253	206579660	-	KPK_2781	-	transcriptional regulator, DeoR family
2727	 64.23	+1	2837034..2837936	+	300	206579549	-	KPK_2782	-	3-hydroxyisobutyrate dehydrogenase family protein
2728	 65.17	+1	2837948..2839213	+	421	206580892	-	KPK_2783	-	YgbK domain protein
2729	 61.51	0	2839206..2839826	+	206	206579927	-	KPK_2784	-	aldolase, class II, AraD/FucA family
2730	 57.47	0	2839831..2840613	+	260	206576609	-	KPK_2785	-	AP endonuclease, family 2
2731	 59.34	0	2840671..2842035	+	454	206575798	-	KPK_2786	-	transporter, gluconate:H+ symporter (GntP) family
2732	 55.67	0	2842084..2842983	-	299	206577762	-	KPK_2787	-	putative transcriptional regulator, AraC family
2733	 43.79	-1	2843294..2843905	+	203	206578142	-	KPK_2788	-	transcriptional regulator, LuxR family
2734	 58.05	0	2844455..2845672	+	405	206576332	-	KPK_2789	-	BLUF domain/cyclic diguanylate phosphodiesterase
2735	 61.48	0	2845693..2846193	-	166	206576975	-	KPK_2790	-	competence/damage-inducible protein CinA C-terminal domain protein
2736	 51.05	0	2846373..2846846	-	157	206579003	-	KPK_2791	-	Hsp20/alpha crystallin family protein
2737	 44.92	-1	2847873..2848502	+	209	206577808	-	KPK_2793	-	transcriptional regulator, LuxR family
2738	 37.40	-2	2848499..2848621	-	40	206579753	-	KPK_2792	-	hypothetical protein
2739	 31.75	-2	2848676..2848801	-	41	206578582	-	KPK_2794	-	hypothetical protein
2740	 50.92	0	2848971..2849516	-	181	206576593	-	KPK_2795	-	acetyltransferase, GNAT family
2741	 47.09	-1	2849736..2850629	+	297	206577316	-	KPK_2796	-	transcriptional regulator, LysR family
2742	 38.26	-2	2850640..2850903	-	87	206578694	-	KPK_2797	-	hypothetical protein
2743	 55.85	0	2850968..2851420	-	150	206579422	-	KPK_2798	-	hypothetical protein
2744	 55.17	0	2851507..2851767	-	86	206581067	-	KPK_2799	-	hypothetical protein
2745	 64.69	+1	2852062..2852922	+	286	206580492	-	KPK_2800	-	beta-lactamase
2746	 60.24	0	2852940..2853701	-	253	206576742	-	KPK_2801	-	transcriptional regulator, DeoR family
2747	 64.23	+1	2853962..2854864	+	300	206580324	-	KPK_2802	-	3-hydroxyisobutyrate dehydrogenase family protein
2748	 65.17	+1	2854876..2856141	+	421	206577964	-	KPK_2803	-	YgbK domain protein
2749	 61.51	0	2856134..2856754	+	206	206575961	-	KPK_2804	-	aldolase, class II, AraD/FucA family
2750	 57.47	0	2856759..2857541	+	260	206577791	-	KPK_2805	-	AP endonuclease, family 2
2751	 59.34	0	2857599..2858963	+	454	206577027	-	KPK_2806	-	transporter, gluconate:H+ symporter (GntP) family
2752	 55.67	0	2859012..2859911	-	299	206578362	-	KPK_2807	-	putative transcriptional regulator, AraC family
2753	 43.79	-1	2860222..2860833	+	203	206579359	-	KPK_2808	-	transcriptional regulator, LuxR family
2754	 58.05	0	2861383..2862600	+	405	206578937	-	KPK_2809	-	BLUF domain/cyclic diguanylate phosphodiesterase
2755	 61.48	0	2862621..2863121	-	166	206579826	-	KPK_2810	-	competence/damage-inducible protein CinA C-terminal domain protein
2756	 51.05	0	2863301..2863774	-	157	206579398	-	KPK_2811	-	Hsp20/alpha crystallin family protein
2757	 44.92	-1	2864801..2865430	+	209	206580537	-	KPK_2813	-	transcriptional regulator, LuxR family
2758	 37.40	-2	2865427..2865549	-	40	206576030	-	KPK_2812	-	hypothetical protein
2759	 31.75	-2	2865604..2865729	-	41	206576160	-	KPK_2814	-	hypothetical protein
2760	 50.92	0	2865899..2866444	-	181	206580999	-	KPK_2815	-	acetyltransferase, GNAT family
2761	 47.09	-1	2866664..2867557	+	297	206577089	-	KPK_2816	-	transcriptional regulator, LysR family
2762	 40.82	-2	2867568..2868155	-	195	206576231	-	KPK_2817	-	translocator protein, LysE family
2763	 56.67	0	2868300..2868989	-	229	206578620	-	KPK_2818	-	Integral membrane protein
2764	 49.57	-1	2869043..2869627	-	194	206580508	-	KPK_2819	-	hypothetical protein
2765	 51.85	0	2869759..2870352	-	197	206578046	-	KPK_2820	-	transcriptional regulator, TetR family
2766	 51.12	0	2870522..2871415	+	297	206577467	-	KPK_2821	-	3-beta hydroxysteroid dehydrogenase/isomerase family protein
2767	 46.38	-1	2872107..2873018	-	303	206576830	-	KPK_2822	-	transcriptional regulator, LysR family
2768	 52.01	0	2874506..2875426	+	306	206577006	-	KPK_2824	-	transcriptional regulator, LysR family
2769	 54.67	0	2878009..2878158	+	49	206578330	-	KPK_2826	-	hypothetical protein
2770	 53.90	0	2878719..2879642	-	307	206576168	-	KPK_2827	-	IS903, transposase
2771	 31.11	-2	2879783..2880097	+	104	206580345	-	KPK_2828	-	hypothetical protein
2772	 35.78	-2	2880113..2880562	+	149	206581134	-	KPK_2829	-	hypothetical protein
2773	 55.36	0	2881862..2882860	+	332	206579294	-	KPK_2831	-	site-specific recombinase, phage integrase family
2774	 48.44	-1	2882857..2885067	+	736	206579886	-	KPK_2832	-	site-specific recombinase, phage integrase family
2775	 38.15	-2	2885160..2885678	-	172	206580481	-	KPK_2833	-	hypothetical protein
2776	 39.77	-2	2885691..2886545	-	284	206575830	-	KPK_2834	-	hypothetical protein
2777	 46.36	-1	2886682..2887863	+	393	206576600	-	KPK_2835	-	hypothetical protein
2778	 45.22	-1	2887860..2890088	+	742	206577731	-	KPK_2836	-	ThiF family protein
2779	 48.65	-1	2890263..2890745	-	160	206578336	-	KPK_2837	-	protein UmuD homolog
2780	 48.79	-1	2891208..2891414	+	68	206578609	-	KPK_2838	-	DinI family protein
2781	 37.86	-2	2891691..2892242	-	183	206576236	-	KPK_2839	-	hypothetical protein
2782	 57.29	0	2892525..2893121	-	198	206579209	hin	KPK_2840	-	DNA-invertase hin
2783	 52.31	0	2893261..2895120	+	619	206581053	-	KPK_2841	-	hypothetical protein
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.