IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2661	 65.82	+1	2777536..2778480	+	314	206580558	-	KPK_2716	-	transcriptional regulator, AraC family
2662	 63.36	0	2778490..2779245	-	251	206578669	-	KPK_2717	-	hypothetical protein
2663	 59.29	0	2779423..2779734	-	103	206578226	-	KPK_2718	-	hypothetical protein
2664	 59.09	0	2779909..2780040	-	43	206576305	-	KPK_2719	-	hypothetical protein
2665	 62.59	0	2780303..2781331	+	342	206576104	-	KPK_2720	-	oxidoreductase, 2OG-Fe(II) oxygenase family
2666	 57.37	0	2781355..2782161	+	268	206576868	-	KPK_2721	-	methionine uptake ABC transporter (MUT) family, periplasmic methionine-binding protein
2667	 62.12	0	2782158..2782949	+	263	206579982	-	KPK_2722	-	methionine uptake ABC transporter (MUT) family, ATP-binding protein
2668	 60.91	0	2782946..2783605	+	219	206580732	-	KPK_2723	-	methionine uptake ABC transporter (MUT) family, permease protein
2669	 63.50	0	2783616..2784689	-	357	206577857	-	KPK_2724	-	oxidoreductase, 2-nitropropane dioxygenase family
2670	 63.95	+1	2784764..2785609	+	281	206576681	-	KPK_2726	-	transcriptional regulator, LysR family
2671	 62.18	0	2785606..2786787	-	393	206578450	-	KPK_2725	-	transporter, major facilitator family
2672	 41.53	-2	2786696..2786878	+	60	206575822	-	KPK_2727	-	hypothetical protein
2673	 58.45	0	2786972..2787397	+	141	206580012	-	KPK_2728	-	hypothetical protein
2674	 64.21	+1	2787436..2787882	-	148	206580719	-	KPK_2729	-	glyoxalase family protein
2675	 61.53	0	2788112..2789299	+	395	206576136	-	KPK_2730	-	transporter, major facilitator family
2676	 50.86	0	2789516..2789806	+	96	206576744	-	KPK_2731	-	hypothetical protein
2677	 60.63	0	2790009..2790770	+	253	206577695	tam	KPK_2732	-	trans-aconitate 2-methyltransferase
2678	 60.44	0	2790927..2791247	+	106	206575881	-	KPK_2733	-	carboxymuconolactone decarboxylase family protein
2679	 58.27	0	2791238..2791618	+	126	206579210	-	KPK_2734	-	hypothetical protein
2680	 50.00	-1	2791611..2791748	+	45	206577423	-	KPK_2735	-	hypothetical protein
2681	 31.28	-2	2792168..2792362	-	64	206576696	-	KPK_2736	-	hypothetical protein
2682	 36.26	-2	2792367..2793083	-	238	206579866	-	KPK_2737	-	hypothetical protein
2683	 56.60	0	2793644..2794090	-	148	206578339	-	KPK_2738	-	acetyltransferase, GNAT family
2684	 58.82	0	2794345..2795796	-	483	206577732	uxaB	KPK_2739	-	tagaturonate reductase
2685	 59.51	0	2795910..2796440	-	176	206580894	-	KPK_2740	-	acetyltransferase, GNAT family
2686	 57.47	0	2796518..2797942	-	474	206576174	-	KPK_2741	-	putative membrane-bound diguanylate cyclase
2687	 61.79	0	2798057..2798425	-	122	206578732	-	KPK_2742	-	hypothetical protein
2688	 61.49	0	2798425..2799351	-	308	206580769	-	KPK_2743	-	glutaminase
2689	 65.51	+1	2799433..2800818	-	461	206577177	-	KPK_2744	-	aldehyde dehydrogenase (NAD) family protein
2690	 63.94	+1	2800925..2801803	+	292	206576387	-	KPK_2746	-	transcriptional regulator, LysR family
2691	 61.70	0	2801757..2802239	-	160	206579666	-	KPK_2745	-	acetyltransferase, GNAT family
2692	 62.65	0	2802385..2803329	+	314	206578175	-	KPK_2747	-	L-lactate dehydrogenase
2693	 60.76	0	2803344..2804105	-	253	206580138	-	KPK_2748	-	transcriptional regulator, DeoR family
2694	 62.21	0	2804107..2805093	-	328	206580903	-	KPK_2749	-	putative 4-hydroxythreonine-4-phosphate dehydrogenase
2695	 65.37	+1	2805086..2806321	-	411	206579093	-	KPK_2750	-	hypothetical protein
2696	 63.97	+1	2806497..2807645	+	382	206579175	-	KPK_2751	-	putative 5-hydroxyvalerate dehydrogenase
2697	 59.89	0	2807659..2808543	+	294	206578070	-	KPK_2752	-	putative dihydrodipicolinate synthase
2698	 49.21	-1	2808629..2809579	+	316	206575919	gyaR	KPK_2753	-	glyoxylate reductase
2699	 48.41	-1	2809643..2810962	+	439	206580292	-	KPK_2754	-	transporter, major facilitator family
2700	 61.26	0	2811008..2811802	-	264	206580890	-	KPK_2755	-	phenazine biosynthesis protein PhzF family
2701	 58.75	0	2812004..2813203	+	399	206580975	sotB	KPK_2756	-	sugar efflux transporter SotB
2702	 56.05	0	2813274..2813942	-	222	206579017	marC	KPK_2757	-	multiple antibiotic resistance protein MarC
2703	 54.71	0	2814204..2814638	+	144	206576176	marR	KPK_2758	-	multiple antibiotic resistance protein MarR
2704	 50.93	0	2814658..2815032	+	124	206576805	marA	KPK_2759	-	multiple antibiotic resistance protein MarA
2705	 51.60	0	2815073..2815291	+	72	206577753	marB	KPK_2760	-	multiple antibiotic resistance protein MarB
2706	 61.44	0	2815338..2816237	-	299	206577253	eamA	KPK_2761	-	transporter, 10 TMS drug/metabolite exporter (DME) family
2707	 59.72	0	2816432..2817625	+	397	206578479	-	KPK_2762	-	transporter, major facilitator family
2708	 63.77	+1	2817755..2818237	+	160	206579409	-	KPK_2763	-	DNA-binding protein
2709	 63.66	+1	2818273..2818971	-	232	206579976	urtE	KPK_2764	-	urea ABC transporter, ATP-binding protein UrtE
2710	 61.90	0	2818981..2819778	-	265	206580895	urtD	KPK_2765	-	urea ABC transporter, ATP-binding protein UrtD
2711	 63.87	+1	2819778..2820851	-	357	206576241	urtC	KPK_2766	-	urea ABC transporter, permease protein UrtC
2712	 64.95	+1	2820851..2822425	-	524	206577028	urtB	KPK_2767	-	urea ABC transporter, permease protein UrtB
2713	 58.10	0	2822487..2823758	-	423	206578033	urtA	KPK_2768	-	urea ABC transporter, urea binding protein
2714	 61.05	0	2823929..2825032	-	367	206577395	-	KPK_2769	-	methionine synthase, vitamin-B12 independent family protein
2715	 63.16	0	2825181..2825579	-	132	206577761	-	KPK_2770	-	hypothetical protein
2716	 64.75	+1	2825647..2826744	+	365	206579529	-	KPK_2771	-	transcriptional regulator, AraC family
2717	 56.48	0	2826713..2826928	+	71	206580572	-	KPK_2772	-	hypothetical protein
2718	 56.69	0	2826981..2827421	-	146	206580426	-	KPK_2773	-	acetyltransferase, GNAT family
2719	 66.48	+1	2827687..2828751	-	354	206576645	lacI	KPK_2774	-	lactose operon repressor
2720	 41.46	-2	2828773..2828895	+	40	206575729	-	KPK_2775	-	hypothetical protein
2721	 63.90	+1	2828948..2832055	+	1035	206577397	lacZ	KPK_2776	-	beta-galactosidase
2722	 55.69	0	2832110..2833375	+	421	206579375	lacY	KPK_2777	-	lactose permease
2723	 60.42	0	2833404..2834492	-	362	206576343	-	KPK_2778	-	RecF/RecN/SMC N-terminal domain protein
2724	 55.17	0	2834579..2834839	-	86	206577134	-	KPK_2779	-	hypothetical protein
2725	 64.69	+1	2835134..2835994	+	286	206577539	-	KPK_2780	-	beta-lactamase
2726	 60.24	0	2836012..2836773	-	253	206579660	-	KPK_2781	-	transcriptional regulator, DeoR family
2727	 64.23	+1	2837034..2837936	+	300	206579549	-	KPK_2782	-	3-hydroxyisobutyrate dehydrogenase family protein
2728	 65.17	+1	2837948..2839213	+	421	206580892	-	KPK_2783	-	YgbK domain protein
2729	 61.51	0	2839206..2839826	+	206	206579927	-	KPK_2784	-	aldolase, class II, AraD/FucA family
2730	 57.47	0	2839831..2840613	+	260	206576609	-	KPK_2785	-	AP endonuclease, family 2
2731	 59.34	0	2840671..2842035	+	454	206575798	-	KPK_2786	-	transporter, gluconate:H+ symporter (GntP) family
2732	 55.67	0	2842084..2842983	-	299	206577762	-	KPK_2787	-	putative transcriptional regulator, AraC family
2733	 43.79	-1	2843294..2843905	+	203	206578142	-	KPK_2788	-	transcriptional regulator, LuxR family
2734	 58.05	0	2844455..2845672	+	405	206576332	-	KPK_2789	-	BLUF domain/cyclic diguanylate phosphodiesterase
2735	 61.48	0	2845693..2846193	-	166	206576975	-	KPK_2790	-	competence/damage-inducible protein CinA C-terminal domain protein
2736	 51.05	0	2846373..2846846	-	157	206579003	-	KPK_2791	-	Hsp20/alpha crystallin family protein
2737	 44.92	-1	2847873..2848502	+	209	206577808	-	KPK_2793	-	transcriptional regulator, LuxR family
2738	 37.40	-2	2848499..2848621	-	40	206579753	-	KPK_2792	-	hypothetical protein
2739	 31.75	-2	2848676..2848801	-	41	206578582	-	KPK_2794	-	hypothetical protein
2740	 50.92	0	2848971..2849516	-	181	206576593	-	KPK_2795	-	acetyltransferase, GNAT family
2741	 47.09	-1	2849736..2850629	+	297	206577316	-	KPK_2796	-	transcriptional regulator, LysR family
2742	 38.26	-2	2850640..2850903	-	87	206578694	-	KPK_2797	-	hypothetical protein
2743	 55.85	0	2850968..2851420	-	150	206579422	-	KPK_2798	-	hypothetical protein
2744	 55.17	0	2851507..2851767	-	86	206581067	-	KPK_2799	-	hypothetical protein
2745	 64.69	+1	2852062..2852922	+	286	206580492	-	KPK_2800	-	beta-lactamase
2746	 60.24	0	2852940..2853701	-	253	206576742	-	KPK_2801	-	transcriptional regulator, DeoR family
2747	 64.23	+1	2853962..2854864	+	300	206580324	-	KPK_2802	-	3-hydroxyisobutyrate dehydrogenase family protein
2748	 65.17	+1	2854876..2856141	+	421	206577964	-	KPK_2803	-	YgbK domain protein
2749	 61.51	0	2856134..2856754	+	206	206575961	-	KPK_2804	-	aldolase, class II, AraD/FucA family
2750	 57.47	0	2856759..2857541	+	260	206577791	-	KPK_2805	-	AP endonuclease, family 2
2751	 59.34	0	2857599..2858963	+	454	206577027	-	KPK_2806	-	transporter, gluconate:H+ symporter (GntP) family
2752	 55.67	0	2859012..2859911	-	299	206578362	-	KPK_2807	-	putative transcriptional regulator, AraC family
2753	 43.79	-1	2860222..2860833	+	203	206579359	-	KPK_2808	-	transcriptional regulator, LuxR family
2754	 58.05	0	2861383..2862600	+	405	206578937	-	KPK_2809	-	BLUF domain/cyclic diguanylate phosphodiesterase
2755	 61.48	0	2862621..2863121	-	166	206579826	-	KPK_2810	-	competence/damage-inducible protein CinA C-terminal domain protein
2756	 51.05	0	2863301..2863774	-	157	206579398	-	KPK_2811	-	Hsp20/alpha crystallin family protein
2757	 44.92	-1	2864801..2865430	+	209	206580537	-	KPK_2813	-	transcriptional regulator, LuxR family
2758	 37.40	-2	2865427..2865549	-	40	206576030	-	KPK_2812	-	hypothetical protein
2759	 31.75	-2	2865604..2865729	-	41	206576160	-	KPK_2814	-	hypothetical protein
2760	 50.92	0	2865899..2866444	-	181	206580999	-	KPK_2815	-	acetyltransferase, GNAT family
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.