IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2354	 62.99	0	2465032..2466036	+	334	206575810	tehA	KPK_2408	-	tellurite resistance protein TehA
2355	 57.12	0	2466033..2466629	+	198	206576419	tehB	KPK_2409	-	tellurite resistance protein TehB
2356	 50.88	0	2466655..2466768	+	37	206578315	-	KPK_2410	-	hypothetical protein
2357	 55.46	0	2466890..2467558	+	222	206577187	-	KPK_2411	-	putative lipoprotein
2358	 58.42	0	2467605..2468501	-	298	206576871	-	KPK_2412	-	hypothetical protein
2359	 60.69	0	2468683..2469552	+	289	206580235	-	KPK_2414	-	transcriptional regulator, AraC family
2360	 66.32	+1	2469529..2470695	-	388	206576092	-	KPK_2413	-	benzoate transporter family protein
2361	 59.65	0	2470869..2471438	+	189	206580811	-	KPK_2415	-	DNA-binding protein
2362	 48.21	-1	2471449..2471616	-	55	206578500	-	KPK_2416	-	hypothetical protein
2363	 57.49	0	2471650..2473611	+	653	206579768	-	KPK_2417	-	peptidase, U32 family
2364	 64.96	+1	2473624..2473857	-	77	206577279	-	KPK_2418	-	hypothetical protein
2365	 58.82	0	2474008..2474313	-	101	206577917	-	KPK_2419	-	hypothetical protein
2366	 60.32	0	2474409..2474534	-	41	206577755	-	KPK_2420	-	hypothetical protein
2367	 61.92	0	2474534..2475544	-	336	206577806	cioB	KPK_2421	-	cyanide-insensitive terminal oxidase CioB
2368	 60.09	0	2475544..2476941	-	465	206578387	cioA	KPK_2422	-	cyanide-insensitive terminal oxidase CioA
2369	 61.36	0	2477623..2479035	+	470	206580636	-	KPK_2423	-	transcriptional regulator, GntR family/aminotransferase, classes I and II
2370	 58.64	0	2479341..2480486	+	381	206580069	-	KPK_2424	-	ABC transporter, periplasmic substrate-binding protein
2371	 62.82	0	2480503..2481516	+	337	206579834	-	KPK_2425	-	ABC transporter, ATP-binding protein
2372	 59.89	0	2481518..2482447	+	309	206579240	-	KPK_2426	-	ABC transporter, permease protein
2373	 59.36	0	2482437..2483243	+	268	206575982	-	KPK_2427	-	ABC transporter, permease protein
2374	 61.76	0	2483266..2484693	+	475	206580820	ydcW	KPK_2428	-	gamma-aminobutyraldehyde dehydrogenase
2375	 51.22	0	2485026..2485148	-	40	206576734	-	KPK_2429	-	hypothetical protein
2376	 53.97	0	2485641..2485892	+	83	206580407	-	KPK_2430	-	hypothetical protein
2377	 54.02	0	2486233..2486406	+	57	206577045	-	KPK_2431	-	hypothetical protein
2378	 61.20	0	2486493..2487242	+	249	206576197	-	KPK_2432	-	hydrolase, alpha/beta fold family
2379	 63.88	+1	2487255..2488688	-	477	206581057	vdh	KPK_2433	-	vanillin dehydrogenase
2380	 56.97	0	2488958..2490556	+	532	206580416	-	KPK_2434	-	periplasmic dipeptide transport protein
2381	 58.55	0	2490573..2490806	+	77	206576469	-	KPK_2435	-	hypothetical protein
2382	 64.22	+1	2490815..2491264	-	149	206575821	-	KPK_2436	-	hypothetical protein
2383	 58.19	0	2491261..2491779	-	172	206578555	-	KPK_2437	-	acetyltransferase, GNAT family
2384	 62.03	0	2491942..2492523	+	193	206578107	-	KPK_2438	-	DNA-binding protein
2385	 61.95	0	2492589..2493626	+	345	206579519	-	KPK_2439	-	oxidoreductase, zinc-binding dehydrogenase family
2386	 61.65	0	2493689..2494624	-	311	206579354	rihA	KPK_2440	-	pyrimidine-specific ribonucleoside hydrolase RihA
2387	 57.14	0	2494586..2494816	+	76	206576845	-	KPK_2441	-	hypothetical protein
2388	 56.67	0	2494906..2495205	+	99	206577491	-	KPK_2442	-	hypothetical protein
2389	 61.40	0	2495278..2497383	-	701	206580463	-	KPK_2443	-	TonB-dependent receptor
2390	 58.29	0	2497643..2498704	+	353	206576307	-	KPK_2444	-	hypothetical protein
2391	 51.80	0	2498861..2499082	+	73	206577495	-	KPK_2445	-	putative lipoprotein
2392	 59.52	0	2499133..2500587	-	484	206578761	ansP	KPK_2446	-	L-asparagine permease
2393	 63.63	+1	2500777..2501664	-	295	206576336	-	KPK_2447	-	transcriptional regulator, LysR family
2394	 56.06	0	2501859..2502725	+	288	206576941	-	KPK_2448	-	putative diaminopimelate epimerase
2395	 55.03	0	2502749..2503444	-	231	206579912	-	KPK_2449	-	thiopurine S-methyltransferase family protein
2396	 65.22	+1	2503540..2504091	+	183	206579979	-	KPK_2450	-	hypothetical protein
2397	 66.37	+1	2504183..2505190	+	335	206580460	-	KPK_2451	-	monooxygenase, luciferase family
2398	 63.99	+1	2505180..2506301	+	373	206578531	-	KPK_2452	-	amidohydrolase family protein
2399	 56.16	0	2506326..2507639	+	437	206579355	-	KPK_2453	-	Ytnj protein
2400	 59.70	0	2507657..2508589	+	310	206578320	-	KPK_2454	-	ABC transporter, periplasmic substrate-binding protein
2401	 60.78	0	2508601..2509110	+	169	206577365	-	KPK_2455	-	acetyltransferase, GNAT family
2402	 62.03	0	2509120..2510046	+	308	206576764	-	KPK_2456	-	amino acid ABC transporter, permease protein
2403	 60.51	0	2510030..2510809	+	259	206575788	-	KPK_2457	-	amino acid ABC transporter, ATP-binding protein
2404	 65.55	+1	2510806..2511699	+	297	206580640	-	KPK_2458	-	amino acid ABC transporter, periplasmic amino acid-binding protein
2405	 53.47	0	2511765..2513075	-	436	206581079	-	KPK_2459	-	transporter, major facilitator family
2406	 59.48	0	2513280..2514476	-	398	206576533	-	KPK_2460	-	mandelate racemase/muconate lactonizing enzyme family protein
2407	 61.89	0	2514781..2515785	+	334	206576113	-	KPK_2461	-	sugar binding transcriptional regulator, LacI family
2408	 62.94	0	2515869..2516486	+	205	206578092	-	KPK_2462	-	glutathione S-transferase domain protein
2409	 56.58	0	2516557..2516784	+	75	206579572	-	KPK_2463	-	tautomerase enzyme family protein
2410	 59.28	0	2516824..2518434	-	536	206578943	-	KPK_2464	-	porin, LamB family
2411	 60.30	0	2518477..2519859	-	460	206578465	-	KPK_2465	-	sugar transporter, glycoside-pentoside-hexuronide (GPH):cation symporter family
2412	 61.70	0	2519883..2521451	-	522	206580379	-	KPK_2466	-	alpha-L-rhamnosidase family protein
2413	 54.30	0	2521656..2522480	+	274	206576536	-	KPK_2467	-	putative HTH-type transcriptional activator RhaS
2414	 64.09	+1	2522536..2523117	-	193	206575835	-	KPK_2468	-	flavin reductase domain protein
2415	 63.83	+1	2523329..2524033	+	234	206578128	-	KPK_2469	-	ABC transporter, ATP-binding protein
2416	 62.44	0	2524030..2524998	+	322	206578156	-	KPK_2470	-	ABC transporter, periplasmic substrate-binding protein
2417	 65.94	+1	2525057..2526712	+	551	206579380	-	KPK_2471	-	ABC transporter, permease protein
2418	 59.22	0	2526789..2527634	+	281	206577294	nhoA	KPK_2472	-	N-hydroxyarylamine O-acetyltransferase
2419	 59.77	0	2527831..2528511	-	226	206580562	narV	KPK_2473	-	respiratory nitrate reductase 2, gamma subunit
2420	 61.06	0	2528508..2529203	-	231	206578472	narW	KPK_2474	-	nitrate reductase molybdenum cofactor assembly chaperone 2
2421	 58.71	0	2529203..2530747	-	514	206577007	narY	KPK_2475	-	nitrate reductase 2, beta subunit
2422	 59.69	0	2530744..2534484	-	1246	206580298	narZ	KPK_2476	-	nitrate reductase 2, alpha subunit
2423	 55.89	0	2534598..2535980	-	460	206579784	narU	KPK_2477	-	nitrite extrusion protein 2
2424	 60.24	0	2536155..2536730	-	191	206577557	-	KPK_2478	-	transcriptional regulator, TetR family
2425	 64.13	+1	2536850..2538349	+	499	206578957	-	KPK_2480	-	putative methyl viologen resistance protein SmvA
2426	 65.16	+1	2538344..2539141	-	265	206578614	-	KPK_2479	-	transcriptional regulator, IclR family
2427	 61.84	0	2539397..2540515	+	372	206580973	catB	KPK_2481	-	muconate cycloisomerase
2428	 47.08	-1	2540528..2540818	+	96	206580202	catC	KPK_2482	-	muconolactone delta-isomerase
2429	 58.04	0	2540888..2541814	+	308	206575994	catA	KPK_2483	-	catechol 1,2-dioxygenase
2430	 54.81	0	2541924..2543306	+	460	206580643	cbeA	KPK_2484	-	2-chlorobenzoate 1,2-dioxygenase, alpha subunit
2431	 54.73	0	2543306..2543791	+	161	206577206	cbeB	KPK_2485	-	2-chlorobenzoate 1,2-dioxygenase, beta subunit
2432	 60.08	0	2543801..2544817	+	338	206576942	cbeC	KPK_2486	-	2-chlorobenzoate 1,2-dioxygenase, electron transfer subunit
2433	 63.57	0	2544827..2545600	+	257	206579311	cbeD	KPK_2488	-	cis-diol dehydrogenase
2434	 59.73	0	2545597..2546475	-	292	206579924	-	KPK_2487	-	hypothetical protein
2435	 57.97	0	2546701..2549748	+	1015	206580114	fdnG	KPK_2489	-	formate dehydrogenase, nitrate inducible, alpha subunit, selenocysteine-containing
2436	 56.84	0	2549760..2550644	+	294	206580675	fdnH	KPK_2490	-	formate dehydrogenase, nitrate-inducible, iron-sulfur subunit
2437	 52.21	0	2550637..2551293	+	218	206577722	fdnI	KPK_2491	-	formate dehydrogenase, gamma subunit
2438	 40.43	-2	2551346..2551669	-	107	206578326	-	KPK_2492	-	hypothetical protein
2439	 41.94	-2	2551669..2551854	-	61	206578594	-	KPK_2493	-	hypothetical protein
2440	 58.24	0	2552033..2552851	-	272	206579193	-	KPK_2494	-	putative polyphosphate kinase
2441	 64.61	+1	2552938..2553375	-	145	206579382	-	KPK_2495	-	glyoxalase family protein
2442	 60.26	0	2553653..2554807	+	384	206579975	-	KPK_2496	-	putative transporter AraJ
2443	 65.20	+1	2554814..2555905	-	363	206576163	-	KPK_2497	-	putative peroxidase
2444	 65.05	+1	2555915..2556901	-	328	206578862	-	KPK_2498	-	monooxygenase, luciferase family
2445	 63.76	+1	2556901..2558517	-	538	206577373	-	KPK_2499	-	ABC transporter, ATP-binding protein
2446	 67.14	+1	2558514..2559362	-	282	206576694	-	KPK_2500	-	ABC transporter, permease protein
2447	 62.86	0	2559359..2560303	-	314	206581072	-	KPK_2501	-	ABC transporter, permease protein
2448	 61.00	0	2560314..2561936	-	540	206580318	-	KPK_2502	-	ABC transporter, periplasmic substrate-binding protein
2449	 59.74	0	2562094..2563104	-	336	206579606	-	KPK_2503	-	alcohol dehydrogenase
2450	 57.17	0	2563358..2563957	+	199	206578848	-	KPK_2504	-	inorganic diphosphatase
2451	 61.32	0	2564125..2565078	+	317	206578055	-	KPK_2505	-	transcriptional regulator, MarR family/acetyltransferase, GNAT family
2452	 65.15	+1	2565115..2566830	-	571	206577112	-	KPK_2506	-	ABC transporter, ATP-binding protein
2453	 51.27	0	2567228..2567935	-	235	206577555	-	KPK_2507	-	hypothetical protein
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.