IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2248	 51.04	0	2364787..2364978	-	63	206579300	-	KPK_2299	-	hypothetical protein
2249	 58.22	0	2364977..2365876	+	299	206578710	-	KPK_2300	-	transcriptional regulator, LysR family
2250	 61.52	0	2366173..2367162	+	329	206580550	-	KPK_2301	-	ABC transporter, periplasmic substrate-binding protein
2251	 66.31	+1	2367174..2368592	+	472	206579968	-	KPK_2302	-	amidohydrolase family protein
2252	 59.39	0	2368613..2369602	+	329	206579360	-	KPK_2303	-	oxidoreductase, 2OG-Fe(II) oxygenase family
2253	 61.56	0	2369618..2370400	-	260	206578705	-	KPK_2304	-	transcriptional regulator, DeoR family
2254	 61.96	0	2370493..2371830	-	445	206578206	-	KPK_2305	-	aminotransferase, class III
2255	 59.21	0	2371820..2372851	-	343	206577585	-	KPK_2306	-	phosphotransferase family protein
2256	 59.79	0	2373304..2374074	+	256	206577646	-	KPK_2307	-	oxidoreductase, short chain dehydrogenase/reductase family
2257	 55.86	0	2374089..2375615	+	508	206579467	-	KPK_2308	-	amino acid permease family protein
2258	 59.48	0	2375677..2376594	-	305	206580873	-	KPK_2309	-	transcriptional regulator, LysR family
2259	 62.36	0	2376711..2378243	+	510	206580227	-	KPK_2310	-	transporter, major facilitator family
2260	 56.89	0	2378387..2379460	+	357	206579990	-	KPK_2311	-	transcriptional regulator, LuxR family
2261	 56.24	0	2379474..2379962	-	162	206576556	-	KPK_2312	-	DinB family protein
2262	 56.26	0	2380080..2380598	-	172	206580269	-	KPK_2313	-	hypothetical protein
2263	 63.17	0	2380976..2381947	-	323	206576686	-	KPK_2314	-	peptide ABC transporter, ATP-binding protein
2264	 66.97	+1	2381944..2382924	-	326	206575914	-	KPK_2315	-	peptide ABC transporter, ATP-binding protein
2265	 63.09	0	2382921..2383871	-	316	206577999	-	KPK_2316	-	peptide ABC transporter, permease protein
2266	 60.42	0	2383868..2384827	-	319	206580448	-	KPK_2317	-	peptide ABC transporter, permease protein
2267	 58.22	0	2384873..2386576	-	567	206581033	-	KPK_2318	-	peptide ABC transporter, periplasmic peptide-binding protein
2268	 64.08	+1	2386725..2387768	-	347	206578871	-	KPK_2319	-	ABC transporter, ATP-binding protein
2269	 56.89	0	2387821..2388597	-	258	206579600	-	KPK_2320	-	ABC transporter, periplasmic substrate-binding protein
2270	 63.56	0	2388629..2389303	-	224	206579891	-	KPK_2321	-	ABC transporter, permease protein
2271	 64.47	+1	2389305..2390531	-	408	206580549	-	KPK_2322	-	acyl-CoA dehydrogenase, C-terminal domain protein
2272	 60.96	0	2390798..2391481	-	227	206578782	-	KPK_2323	-	chloramphenicol O-acetyltransferase
2273	 60.42	0	2391513..2391896	-	127	206579285	-	KPK_2324	-	glyoxalase family protein
2274	 59.01	0	2391987..2392757	+	256	206579573	-	KPK_2325	-	transcriptional regulator, DeoR family
2275	 61.90	0	2392762..2393391	-	209	206577431	-	KPK_2326	-	translocator protein, LysE family
2276	 55.97	0	2393641..2394276	+	211	206577922	-	KPK_2327	-	carbonate dehydratase
2277	 62.54	0	2394313..2395329	-	338	206577015	-	KPK_2328	-	oxidoreductase, zinc-binding dehydrogenase family
2278	 51.90	0	2395484..2395693	-	69	206576598	-	KPK_2329	-	hypothetical protein
2279	 52.86	0	2395778..2396494	-	238	206576194	-	KPK_2330	-	hypothetical protein
2280	 45.29	-1	2396540..2396974	-	144	206580564	-	KPK_2331	-	hypothetical protein
2281	 56.00	0	2397376..2397525	+	49	206580129	-	KPK_2332	-	hypothetical protein
2282	 64.16	+1	2397597..2398433	-	278	206577231	-	KPK_2333	-	metallo-beta-lactamase domain protein
2283	 62.40	0	2398441..2398956	-	171	206577804	-	KPK_2334	-	hypothetical protein
2284	 64.52	+1	2399113..2399997	+	294	206579045	-	KPK_2335	-	transcriptional regulator, LysR family
2285	 63.74	+1	2399999..2400919	-	306	206579662	-	KPK_2336	-	transcriptional regulator, AraC family
2286	 62.28	0	2401018..2401770	+	250	206579397	-	KPK_2337	-	NAD dependent epimerase/dehydratase family protein
2287	 50.88	0	2401805..2401918	+	37	206580049	-	KPK_2338	-	hypothetical protein
2288	 36.84	-2	2402249..2402419	+	56	206577544	-	KPK_2339	-	hypothetical protein
2289	 60.28	0	2403575..2404153	+	192	206579661	-	KPK_2344	-	putative lysine decarboxylase
2290	 50.00	-1	2404146..2404277	-	43	206578163	-	KPK_2343	-	hypothetical protein
2291	 57.63	0	2404294..2404758	-	154	206579069	-	KPK_2345	-	acid shock repeat protein
2292	 59.97	0	2404936..2406309	-	457	206577417	mdtK	KPK_2346	-	multidrug resistance protein MdtK
2293	 52.99	0	2406539..2407174	+	211	206576451	ribE	KPK_2347	-	riboflavin synthase, alpha subunit
2294	 54.22	0	2407210..2408358	-	382	206575918	cfa	KPK_2348	-	cyclopropane-fatty-acyl-phospholipid synthase
2295	 62.10	0	2408652..2409833	-	393	206580738	-	KPK_2349	-	drug resistance transporter, Bcr/CflA subfamily
2296	 62.28	0	2409946..2410857	+	303	206579943	-	KPK_2350	-	transcriptional regulator, LysR family
2297	 55.46	0	2410877..2411902	-	341	206580370	purR	KPK_2351	-	transcriptional repressor PurR
2298	 60.50	0	2412455..2413621	+	388	206576817	-	KPK_2352	-	transporter, major facilitator family
2299	 56.53	0	2413684..2414265	-	193	206578167	sodB	KPK_2353	-	superoxide dismutase (Fe)
2300	 55.97	0	2414748..2415233	+	161	206579320	-	KPK_2355	-	transcriptional regulator, AraC family
2301	 55.10	0	2415188..2416060	-	290	206577560	-	KPK_2354	-	NlpC/P60 family protein
2302	 56.32	0	2416401..2416748	+	115	206578748	-	KPK_2356	-	putative monothiol glutaredoxin
2303	 59.88	0	2416796..2417443	-	215	206580062	rnt	KPK_2357	-	ribonuclease T
2304	 58.82	0	2417581..2417988	-	135	206576417	gloA	KPK_2358	-	lactoylglutathione lyase
2305	 61.48	0	2418067..2419164	-	365	206575817	nemA	KPK_2359	-	N-ethylmaleimide reductase
2306	 57.17	0	2419218..2419817	-	199	206580638	-	KPK_2360	-	transcriptional regulator, TetR family
2307	 58.44	0	2419957..2420199	+	80	206576183	-	KPK_2361	-	hypothetical protein
2308	 58.53	0	2420248..2421144	+	298	206576785	ydhF	KPK_2362	-	oxidoreductase YdhF
2309	 62.26	0	2421214..2421735	+	173	206578186	sodC	KPK_2364	-	superoxide dismutase (Cu-Zn)
2310	 61.04	0	2421728..2423752	-	674	206577383	-	KPK_2363	-	fusaric acid resistance domain protein
2311	 59.59	0	2423752..2424669	-	305	206577905	-	KPK_2365	-	auxiliary transport protein, membrane fusion protein (MFP) family
2312	 53.16	0	2424659..2424895	-	78	206577733	-	KPK_2366	-	hypothetical protein
2313	 52.87	0	2425074..2425508	+	144	206576743	slyA	KPK_2367	-	transcriptional regulator SlyA
2314	 49.49	-1	2425544..2426905	-	453	206576162	-	KPK_2368	-	diguanylate cyclase (GGDEF) domain protein
2315	 60.90	0	2427126..2427593	-	155	206580728	slyB	KPK_2369	-	outer membrane lipoprotein SlyB
2316	 60.89	0	2427862..2428986	+	374	206579303	-	KPK_2370	-	hypothetical protein
2317	 52.71	0	2429052..2429402	+	116	206580393	-	KPK_2371	-	putative lipoprotein
2318	 57.77	0	2429454..2430116	+	220	206580497	pdxH	KPK_2372	-	pyridoxamine 5'-phosphate oxidase
2319	 53.63	0	2430241..2431521	+	426	206580905	tyrS	KPK_2373	-	tyrosyl-tRNA synthetase
2320	 60.63	0	2431580..2432440	+	286	206580193	pdxY	KPK_2374	-	pyridoxal kinase
2321	 57.92	0	2432483..2433088	-	201	206579728	gst	KPK_2375	-	glutathione S-transferase
2322	 56.77	0	2433199..2434704	-	501	206578958	tppB	KPK_2376	-	tripeptide permease TppB
2323	 30.50	-2	2434895..2435035	+	46	206577840	-	KPK_2377	-	hypothetical protein
2324	 57.39	0	2435306..2435941	-	211	206577080	nth	KPK_2378	-	endonuclease III
2325	 60.80	0	2435943..2436641	-	232	206576624	rnfE	KPK_2379	-	electron transport complex, RnfABCDGE type, E subunit
2326	 57.81	0	2436644..2437264	-	206	206579998	rnfG	KPK_2380	-	electron transport complex, RnfABCDGE type, G subunit
2327	 60.49	0	2437275..2438327	-	350	206576676	rnfD	KPK_2381	-	electron transport complex, RnfABCDGE type, D subunit
2328	 64.24	+1	2438328..2440589	-	753	206575962	rnfC	KPK_2382	-	electron transport complex, RnfABCDGE type, C subunit
2329	 58.20	0	2440582..2441160	-	192	206577903	rnfB	KPK_2383	-	electron transport complex, RnfABCDGE type, B subunit
2330	 53.61	0	2441160..2441741	-	193	206579745	rnfA	KPK_2384	-	electron transport complex, RnfABCDGE type, A subunit
2331	 58.05	0	2441820..2442260	-	146	206578976	-	KPK_2385	-	hypothetical protein
2332	 48.15	-1	2442336..2442551	-	71	206580936	-	KPK_2386	-	haemolysin expression modulating protein
2333	 57.62	0	2442770..2444140	-	456	206579431	pbgA	KPK_2387	-	6-phospho-beta-glucosidase pbgA
2334	 46.38	-1	2444256..2444393	-	45	206577509	blr	KPK_2388	-	beta-lactam resistance protein
2335	 61.00	0	2444584..2445624	+	346	206578307	-	KPK_2389	-	oxidoreductase, NAD-binding
2336	 62.08	0	2445660..2446661	-	333	206576076	add	KPK_2390	-	adenosine deaminase
2337	 59.79	0	2446819..2447967	-	382	206578242	-	KPK_2391	-	transporter, major facilitator family
2338	 52.47	0	2448162..2448626	+	154	206577743	-	KPK_2392	-	putative transcriptional regulator
2339	 52.15	0	2448869..2449054	+	61	206579231	-	KPK_2393	-	hypothetical protein
2340	 57.72	0	2449064..2449432	-	122	206578505	-	KPK_2394	-	hypothetical protein
2341	 55.30	0	2449706..2450233	+	175	206580775	-	KPK_2395	-	nickel-dependent hydrogenases b-type cytochrome subunit
2342	 60.51	0	2450342..2450617	+	91	206580060	-	KPK_2396	-	hypothetical protein
2343	 59.79	0	2450642..2451760	+	372	206580142	adhC	KPK_2397	-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
2344	 61.53	0	2451830..2454202	-	790	206576961	quiA_2	KPK_2398	-	quinate dehydrogenase (pyrroloquinoline-quinone)
2345	 59.63	0	2454499..2455422	-	307	206576333	-	KPK_2399	-	transcriptional regulator, LysR family
2346	 58.62	0	2455597..2456217	-	206	206576715	pcaG	KPK_2400	-	protocatechuate 3,4-dioxygenase, alpha subunit
2347	 58.70	0	2456214..2456954	-	246	206579871	pcaH	KPK_2401	-	protocatechuate 3,4-dioxygenase, beta subunit
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.