IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2196	 63.59	0	2315271..2316341	+	356	206580065	-	KPK_2245	-	ABC transporter, ATP-binding protein
2197	 45.33	-1	2316457..2316606	-	49	206579349	-	KPK_2246	-	hypothetical protein
2198	 47.54	-1	2316921..2317448	+	175	206579724	-	KPK_2247	-	hypothetical protein
2199	 61.56	0	2317509..2317880	-	123	206578959	-	KPK_2248	-	glyoxalase family protein
2200	 61.38	0	2318381..2319136	+	251	206575764	-	KPK_2249	-	gluconate 2-dehydrogenase, subunit 3
2201	 60.95	0	2319139..2320923	+	594	206578448	-	KPK_2250	-	gluconate 2-dehydrogenase, flavoprotein subunit
2202	 62.79	0	2320934..2322274	+	446	206580048	-	KPK_2251	-	gluconate 2-dehydrogenase, cytochrome c subunit
2203	 68.91	+1	2322358..2322981	+	207	206576540	ccmA	KPK_2252	-	heme ABC exporter, ATP-binding protein CcmA
2204	 69.85	+1	2322978..2323637	+	219	206578039	ccmB	KPK_2253	-	heme exporter protein B
2205	 64.77	+1	2323687..2324424	+	245	206577115	ccmC	KPK_2254	-	heme exporter protein C
2206	 67.53	+1	2324421..2324651	+	76	206576659	ccmD	KPK_2255	-	heme exporter protein D
2207	 62.75	0	2324635..2325093	+	152	206576029	ccmE	KPK_2256	-	cytochrome c-type biogenesis protein CcmE
2208	 65.08	+1	2325090..2327042	+	650	206578729	ccmF	KPK_2257	-	cytochrome c-type biogenesis protein CcmF
2209	 63.60	0	2327039..2327593	+	184	206580156	dsbE	KPK_2258	-	thiol:disulfide interchange protein DsbE
2210	 67.62	+1	2328048..2328890	+	280	206576565	ccmI	KPK_2260	-	cytochrome c-type biogenesis protein CcmI
2211	 43.33	-2	2330364..2330783	-	139	206577169	-	KPK_2261	-	acetyltransferase, GNAT family
2212	 50.83	0	2331182..2331301	+	39	206579445	-	KPK_2262	-	hypothetical protein
2213	 48.72	-1	2331580..2331735	+	51	206579030	-	KPK_2263	-	hypothetical protein
2214	 45.93	-1	2332964..2333098	-	44	206580619	-	KPK_2264	-	hypothetical protein
2215	 55.05	0	2333561..2334541	-	326	206580201	-	KPK_2265	-	oxidoreductase, zinc-binding dehydrogenase family
2216	 54.21	0	2334649..2335515	+	288	206576879	-	KPK_2266	-	transcriptional regulator, LysR family
2217	 55.32	0	2336190..2337317	+	375	206577608	-	KPK_2268	-	monooxygenase, luciferase family
2218	 59.66	0	2337407..2338177	-	256	206579399	budC	KPK_2269	-	acetoin dehydrogenase
2219	 63.93	+1	2338201..2339880	-	559	206578776	alsS	KPK_2270	-	acetolactate synthase, catabolic
2220	 60.26	0	2339890..2340669	-	259	206580555	budA	KPK_2271	-	alpha-acetolactate decarboxylase
2221	 61.05	0	2340776..2341648	+	290	206580982	-	KPK_2272	-	putative transcriptional regulator BudR
2222	 64.85	+1	2341668..2342438	-	256	206578050	bdhA	KPK_2273	-	3-hydroxybutyrate dehydrogenase
2223	 63.79	+1	2342462..2343853	-	463	206576750	-	KPK_2274	-	citrate transporter family protein
2224	 68.51	+1	2343901..2344824	-	307	206577550	-	KPK_2275	-	3-hydroxyacyl-CoA dehydrogenase family protein
2225	 68.36	+1	2344836..2346017	-	393	206577707	-	KPK_2276	-	acetyl-CoA acetyltransferase
2226	 62.71	0	2346027..2346683	-	218	206576844	-	KPK_2277	-	3-oxoacid CoA-transferase, subunit B family
2227	 63.14	0	2346685..2347392	-	235	206577655	-	KPK_2278	-	3-oxoacid CoA-transferase, subunit A family
2228	 62.18	0	2347533..2348423	+	296	206577833	-	KPK_2279	-	transcriptional regulator, LysR family
2229	 55.32	0	2348471..2348611	-	46	206578631	-	KPK_2280	-	hypothetical protein
2230	 36.75	-2	2348840..2348956	+	38	206580050	-	KPK_2281	-	hypothetical protein
2231	 49.73	-1	2349073..2349810	+	245	206576205	-	KPK_2282	-	hypothetical protein
2232	 64.53	+1	2349893..2351110	-	405	206576779	-	KPK_2283	-	transporter, major facilitator family
2233	 60.17	0	2351288..2351749	-	153	206577593	-	KPK_2284	-	putative transcriptional regulator
2234	 60.24	0	2351810..2352058	+	82	206577632	-	KPK_2285	-	tautomerase domain protein
2235	 65.48	+1	2352260..2353438	+	392	206578424	-	KPK_2286	-	transporter, major facilitator family
2236	 62.50	0	2353567..2354526	+	319	206576725	chrB	KPK_2287	-	chromate resistance protein
2237	 60.75	0	2354495..2355862	+	455	206576206	-	KPK_2288	-	chromate transporter, chromate ion transporter (CHR) family
2238	 47.50	-1	2356001..2356480	-	159	206575993	-	KPK_2289	-	hypothetical protein
2239	 25.20	-2	2356479..2356601	+	40	206580840	-	KPK_2290	-	hypothetical protein
2240	 63.57	0	2357085..2358503	-	472	206579840	-	KPK_2291	-	FAD-binding protein
2241	 60.54	0	2358533..2359348	-	271	206579262	-	KPK_2292	-	ABC transporter, permease protein
2242	 63.78	+1	2359350..2360180	-	276	206577580	-	KPK_2293	-	ABC transporter, ATP-binding protein
2243	 59.76	0	2360177..2361160	-	327	206576799	-	KPK_2294	-	ABC transporter, periplasmic substrate-binding protein
2244	 64.51	+1	2361160..2362041	-	293	206576363	-	KPK_2295	-	creatininase
2245	 60.00	0	2362038..2362517	-	159	206581056	-	KPK_2296	-	endoribonuclease L-PSP family protein
2246	 68.69	+1	2362507..2363790	-	427	206580486	-	KPK_2297	-	putative hydrolase
2247	 59.86	0	2363802..2364770	-	322	206579963	vanB	KPK_2298	-	vanillate O-demethylase oxidoreductase
2248	 51.04	0	2364787..2364978	-	63	206579300	-	KPK_2299	-	hypothetical protein
2249	 58.22	0	2364977..2365876	+	299	206578710	-	KPK_2300	-	transcriptional regulator, LysR family
2250	 61.52	0	2366173..2367162	+	329	206580550	-	KPK_2301	-	ABC transporter, periplasmic substrate-binding protein
2251	 66.31	+1	2367174..2368592	+	472	206579968	-	KPK_2302	-	amidohydrolase family protein
2252	 59.39	0	2368613..2369602	+	329	206579360	-	KPK_2303	-	oxidoreductase, 2OG-Fe(II) oxygenase family
2253	 61.56	0	2369618..2370400	-	260	206578705	-	KPK_2304	-	transcriptional regulator, DeoR family
2254	 61.96	0	2370493..2371830	-	445	206578206	-	KPK_2305	-	aminotransferase, class III
2255	 59.21	0	2371820..2372851	-	343	206577585	-	KPK_2306	-	phosphotransferase family protein
2256	 59.79	0	2373304..2374074	+	256	206577646	-	KPK_2307	-	oxidoreductase, short chain dehydrogenase/reductase family
2257	 55.86	0	2374089..2375615	+	508	206579467	-	KPK_2308	-	amino acid permease family protein
2258	 59.48	0	2375677..2376594	-	305	206580873	-	KPK_2309	-	transcriptional regulator, LysR family
2259	 62.36	0	2376711..2378243	+	510	206580227	-	KPK_2310	-	transporter, major facilitator family
2260	 56.89	0	2378387..2379460	+	357	206579990	-	KPK_2311	-	transcriptional regulator, LuxR family
2261	 56.24	0	2379474..2379962	-	162	206576556	-	KPK_2312	-	DinB family protein
2262	 56.26	0	2380080..2380598	-	172	206580269	-	KPK_2313	-	hypothetical protein
2263	 63.17	0	2380976..2381947	-	323	206576686	-	KPK_2314	-	peptide ABC transporter, ATP-binding protein
2264	 66.97	+1	2381944..2382924	-	326	206575914	-	KPK_2315	-	peptide ABC transporter, ATP-binding protein
2265	 63.09	0	2382921..2383871	-	316	206577999	-	KPK_2316	-	peptide ABC transporter, permease protein
2266	 60.42	0	2383868..2384827	-	319	206580448	-	KPK_2317	-	peptide ABC transporter, permease protein
2267	 58.22	0	2384873..2386576	-	567	206581033	-	KPK_2318	-	peptide ABC transporter, periplasmic peptide-binding protein
2268	 64.08	+1	2386725..2387768	-	347	206578871	-	KPK_2319	-	ABC transporter, ATP-binding protein
2269	 56.89	0	2387821..2388597	-	258	206579600	-	KPK_2320	-	ABC transporter, periplasmic substrate-binding protein
2270	 63.56	0	2388629..2389303	-	224	206579891	-	KPK_2321	-	ABC transporter, permease protein
2271	 64.47	+1	2389305..2390531	-	408	206580549	-	KPK_2322	-	acyl-CoA dehydrogenase, C-terminal domain protein
2272	 60.96	0	2390798..2391481	-	227	206578782	-	KPK_2323	-	chloramphenicol O-acetyltransferase
2273	 60.42	0	2391513..2391896	-	127	206579285	-	KPK_2324	-	glyoxalase family protein
2274	 59.01	0	2391987..2392757	+	256	206579573	-	KPK_2325	-	transcriptional regulator, DeoR family
2275	 61.90	0	2392762..2393391	-	209	206577431	-	KPK_2326	-	translocator protein, LysE family
2276	 55.97	0	2393641..2394276	+	211	206577922	-	KPK_2327	-	carbonate dehydratase
2277	 62.54	0	2394313..2395329	-	338	206577015	-	KPK_2328	-	oxidoreductase, zinc-binding dehydrogenase family
2278	 51.90	0	2395484..2395693	-	69	206576598	-	KPK_2329	-	hypothetical protein
2279	 52.86	0	2395778..2396494	-	238	206576194	-	KPK_2330	-	hypothetical protein
2280	 45.29	-1	2396540..2396974	-	144	206580564	-	KPK_2331	-	hypothetical protein
2281	 56.00	0	2397376..2397525	+	49	206580129	-	KPK_2332	-	hypothetical protein
2282	 64.16	+1	2397597..2398433	-	278	206577231	-	KPK_2333	-	metallo-beta-lactamase domain protein
2283	 62.40	0	2398441..2398956	-	171	206577804	-	KPK_2334	-	hypothetical protein
2284	 64.52	+1	2399113..2399997	+	294	206579045	-	KPK_2335	-	transcriptional regulator, LysR family
2285	 63.74	+1	2399999..2400919	-	306	206579662	-	KPK_2336	-	transcriptional regulator, AraC family
2286	 62.28	0	2401018..2401770	+	250	206579397	-	KPK_2337	-	NAD dependent epimerase/dehydratase family protein
2287	 50.88	0	2401805..2401918	+	37	206580049	-	KPK_2338	-	hypothetical protein
2288	 36.84	-2	2402249..2402419	+	56	206577544	-	KPK_2339	-	hypothetical protein
2289	 60.28	0	2403575..2404153	+	192	206579661	-	KPK_2344	-	putative lysine decarboxylase
2290	 50.00	-1	2404146..2404277	-	43	206578163	-	KPK_2343	-	hypothetical protein
2291	 57.63	0	2404294..2404758	-	154	206579069	-	KPK_2345	-	acid shock repeat protein
2292	 59.97	0	2404936..2406309	-	457	206577417	mdtK	KPK_2346	-	multidrug resistance protein MdtK
2293	 52.99	0	2406539..2407174	+	211	206576451	ribE	KPK_2347	-	riboflavin synthase, alpha subunit
2294	 54.22	0	2407210..2408358	-	382	206575918	cfa	KPK_2348	-	cyclopropane-fatty-acyl-phospholipid synthase
2295	 62.10	0	2408652..2409833	-	393	206580738	-	KPK_2349	-	drug resistance transporter, Bcr/CflA subfamily
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.