IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2104	 61.29	0	2221760..2222224	+	154	206577435	-	KPK_2153	-	lipoprotein, NlpC/P60 family
2105	 62.79	0	2222338..2223780	+	480	206579419	-	KPK_2154	-	hypothetical protein
2106	 54.50	0	2223810..2223998	-	62	206578706	-	KPK_2155	-	hypothetical protein
2107	 62.37	0	2224145..2225191	-	348	206576613	aroH	KPK_2156	-	3-deoxy-7-phosphoheptulonate synthase, Trp-sensitive
2108	 56.83	0	2225346..2226179	-	277	206579006	-	KPK_2157	-	hypothetical protein
2109	 34.17	-2	2226324..2226443	-	39	206581022	-	KPK_2158	-	hypothetical protein
2110	 59.90	0	2226519..2228897	+	792	206580254	ppsA	KPK_2159	-	phosphoenolpyruvate synthase
2111	 61.37	0	2229281..2230393	-	370	206576471	ydiK	KPK_2160	-	inner membrane protein YdiK
2112	 38.89	-2	2230463..2230606	-	47	206575722	-	KPK_2161	-	hypothetical protein
2113	 60.29	0	2230612..2233668	+	1018	206578037	-	KPK_2162	-	putative oxidase, FAD-binding
2114	 60.10	0	2233665..2234075	+	136	206579605	ydiI	KPK_2163	-	esterase YdiI
2115	 51.81	0	2234279..2234527	+	82	206579569	-	KPK_2164	-	hypothetical protein
2116	 66.04	+1	2234625..2234945	-	106	206578830	-	KPK_2165	-	hypothetical protein
2117	 43.03	-2	2235127..2235291	+	54	206580780	-	KPK_2166	-	hypothetical protein
2118	 48.32	-1	2235554..2236534	+	326	206576766	-	KPK_2167	-	hypothetical protein
2119	 58.53	0	2236558..2237589	+	343	206577190	-	KPK_2168	-	cobalamine-independent methonine synthase
2120	 64.96	+1	2237674..2238906	-	410	206579134	-	KPK_2169	-	transporter, major facilitator family
2121	 60.10	0	2238918..2239679	-	253	206578856	-	KPK_2170	-	iron ABC transporter, ATP-binding protein
2122	 64.26	+1	2239679..2240716	-	345	206580993	-	KPK_2171	-	iron ABC transporter, permease protein
2123	 57.06	0	2240716..2241714	-	332	206580852	-	KPK_2172	-	iron ABC transporter, periplasmic iron-binding protein
2124	 64.91	+1	2241873..2242784	-	303	206580186	-	KPK_2173	-	transcriptional regulator, LysR family
2125	 63.96	+1	2242881..2243876	+	331	206576042	-	KPK_2174	-	3-beta hydroxysteroid dehydrogenase/isomerase family protein
2126	 58.21	0	2243972..2244586	+	204	206577867	-	KPK_2175	-	transcriptional regulator, TetR family
2127	 70.09	+1	2244661..2245770	+	369	206579751	-	KPK_2176	-	efflux transporter, RND family, MFP subunit
2128	 62.73	0	2245767..2248868	+	1033	206575973	-	KPK_2177	-	RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
2129	 63.97	+1	2248924..2250108	-	394	206579076	-	KPK_2178	-	putative L-lactate dehydrogenase (cytochrome)
2130	 53.57	0	2250350..2250685	+	111	206579705	-	KPK_2179	-	hypothetical protein
2131	 56.08	0	2251160..2251537	+	125	206578670	sufA	KPK_2180	-	FeS assembly scaffold SufA
2132	 58.00	0	2251540..2253027	+	495	206578883	sufB	KPK_2181	-	FeS assembly protein SufB
2133	 56.09	0	2253044..2253790	+	248	206577153	sufC	KPK_2182	-	FeS assembly ATPase SufC
2134	 62.82	0	2253765..2255039	+	424	206579410	sufD	KPK_2183	-	FeS assembly protein SufD
2135	 64.62	+1	2255036..2256256	+	406	206576958	sufS	KPK_2184	-	cysteine desulfurase
2136	 54.92	0	2256268..2256684	+	138	206576367	sufE	KPK_2185	-	cysteine desulfuration protein SufE
2137	 61.80	0	2256785..2257771	+	328	206580759	-	KPK_2186	-	LysM domain/ErfK/YbiS/YcfS/YnhG family protein
2138	 51.90	0	2257833..2258069	-	78	206575873	lpp	KPK_2187	-	major outer membrane lipoprotein
2139	 55.77	0	2258382..2259794	-	470	206575957	pykF	KPK_2188	-	pyruvate kinase I
2140	 43.18	-2	2259932..2260063	+	43	206577911	-	KPK_2189	-	hypothetical protein
2141	 48.33	-1	2260081..2260200	+	39	206579845	-	KPK_2190	-	hypothetical protein
2142	 55.87	0	2260300..2260512	+	70	206576454	-	KPK_2191	-	hypothetical protein
2143	 58.06	0	2260530..2261168	-	212	206581042	-	KPK_2192	-	transcriptional regulator, TetR family
2144	 64.29	+1	2261295..2263148	+	617	206580454	-	KPK_2193	-	AP endonuclease, family 2/4-hydroxyphenylpyruvate dioxygenase
2145	 62.81	0	2263220..2264542	+	440	206579503	-	KPK_2194	-	transporter, major facilitator family
2146	 64.28	+1	2264558..2265394	+	278	206578951	-	KPK_2195	-	putative shikimate 5-dehydrogenase
2147	 66.94	+1	2265451..2266194	+	247	206576053	-	KPK_2197	-	putative molybdate ABC transporter, periplasmic molybdate-binding protein
2148	 67.33	+1	2266178..2266927	-	249	206576483	-	KPK_2196	-	iron chelate ABC transporter, ATP-binding protein
2149	 67.26	+1	2266924..2267931	-	335	206579345	-	KPK_2198	-	iron chelate ABC transporter, permease protein
2150	 62.32	0	2267921..2268979	-	352	206579933	-	KPK_2199	-	iron chelate ABC transporter, periplasmic iron chelate-binding protein
2151	 63.59	0	2269072..2269884	-	270	206576774	mhpR	KPK_2200	-	Mhp operon transcriptional activator
2152	 63.90	+1	2270062..2271726	+	554	206577716	mhpA	KPK_2201	-	3-(3-hydroxy-phenyl)propionate hydroxylase
2153	 65.29	+1	2271728..2272672	+	314	206576010	mhpB	KPK_2202	-	2,3-dihydroxyphenylpropionate 1,2-dioxygenase
2154	 61.36	0	2272690..2273556	+	288	206576466	mhpC	KPK_2203	-	2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase
2155	 64.56	+1	2273567..2274373	+	268	206579954	mhpD	KPK_2204	-	2-keto-4-pentenoate hydratase
2156	 63.30	0	2274366..2275316	+	316	206581050	mhpF	KPK_2205	-	acetaldehyde dehydrogenase
2157	 63.32	0	2275313..2276329	+	338	206579113	mhpE	KPK_2206	-	4-hydroxy-2-oxovalerate aldolase
2158	 67.42	+1	2276405..2277601	+	398	206578533	-	KPK_2207	-	putative 3-hydroxyphenylpropionic acid transporter MhpT
2159	 62.34	0	2277667..2278428	+	253	206580013	-	KPK_2208	-	conserved hypothetical protein TIGR00726
2160	 68.37	+1	2278441..2280021	-	526	206580632	-	KPK_2209	-	glpE family protein
2161	 61.36	0	2280027..2280629	-	200	206578550	-	KPK_2210	-	cysteine dioxygenase, type I
2162	 65.10	+1	2280736..2281629	+	297	206579267	-	KPK_2211	-	transcriptional regulator, LysR family
2163	 65.29	+1	2281774..2282859	+	361	206577703	-	KPK_2212	-	monooxygenase, luciferase family
2164	 66.32	+1	2282856..2284007	+	383	206578340	-	KPK_2213	-	acyl-CoA dehydrogenase family protein
2165	 64.59	+1	2284013..2284975	+	320	206576204	-	KPK_2214	-	aliphatic sulfonates ABC transporter family, periplasmic substrate-binding protein
2166	 62.24	0	2284972..2286009	+	345	206576801	-	KPK_2215	-	ABC transporter, periplasmic substrate-binding protein
2167	 65.86	+1	2285990..2286985	+	331	206576191	-	KPK_2216	-	ABC transporter, permease protein
2168	 65.53	+1	2286979..2287767	+	262	206576341	-	KPK_2217	-	ABC transporter, ATP-binding protein
2169	 57.94	0	2288147..2290300	-	717	206579833	-	KPK_2218	-	TonB-dependent siderophore receptor
2170	 38.79	-2	2290510..2290674	+	54	206577513	-	KPK_2219	-	hypothetical protein
2171	 62.41	0	2290725..2291546	+	273	206578348	fitB	KPK_2220	-	iron ABC transporter, ATP-binding protein
2172	 69.24	+1	2291558..2292568	+	336	206578580	fitC	KPK_2221	-	iron ABC transporter, permease protein
2173	 68.28	+1	2292565..2293617	+	350	206577727	fitD	KPK_2222	-	iron ABC transporter, permease protein
2174	 61.84	0	2293631..2294584	+	317	206580109	fitE	KPK_2223	-	iron ABC transporter, periplasmic iron-binding protein
2175	 64.45	+1	2294581..2295483	+	300	206580666	-	KPK_2224	-	SIS domain protein
2176	 56.25	0	2295576..2296343	+	255	206576724	-	KPK_2225	-	amino acid ABC transporter, periplasmic amino acid-binding protein
2177	 60.78	0	2296407..2297171	+	254	206580088	-	KPK_2226	-	amino acid ABC transporter, permease protein
2178	 60.86	0	2297158..2297880	+	240	206580280	-	KPK_2227	-	amino acid ABC transporter, ATP-binding protein
2179	 39.95	-2	2297946..2298338	-	130	206575979	-	KPK_2228	-	endoribonuclease L-PSP family protein
2180	 56.48	0	2298459..2299940	-	493	206579091	-	KPK_2229	-	transporter, major facilitator family
2181	 56.22	0	2300002..2300748	-	248	206579712	-	KPK_2230	-	NAD dependent epimerase/dehydratase family
2182	 59.44	0	2300847..2301746	+	299	206577835	-	KPK_2231	-	transcriptional regulator, LysR family
2183	 55.74	0	2301749..2302288	-	179	206579075	-	KPK_2232	-	nickel-dependent hydrogenase, b-type cytochrome subunit family
2184	 50.47	0	2302285..2303340	-	351	206576591	-	KPK_2233	-	catalase
2185	 45.72	-1	2303388..2303960	-	190	206577229	-	KPK_2234	-	hypothetical protein
2186	 50.09	-1	2304160..2304744	-	194	206580816	-	KPK_2235	-	transcriptional regulator, TetR family
2187	 60.05	0	2304887..2305279	-	130	206576653	-	KPK_2236	-	hypothetical protein
2188	 56.78	0	2305321..2305755	-	144	206580701	-	KPK_2237	-	glyoxalase family protein
2189	 65.17	+1	2305870..2307069	-	399	206580020	-	KPK_2238	-	transporter, major facilitator family
2190	 66.32	+1	2307366..2308523	+	385	206576860	-	KPK_2239	-	amidohydrolase family protein
2191	 61.97	0	2308566..2310716	-	716	206576132	fdhA	KPK_2240	-	formate dehydrogenase, alpha subunit
2192	 66.85	+1	2310963..2312042	-	359	206577773	-	KPK_2241	-	malate/L-lactate dehydrogenase
2193	 44.44	-1	2312139..2312327	+	62	206576815	-	KPK_2242	-	hypothetical protein
2194	 53.26	0	2312346..2313434	+	362	206578938	-	KPK_2243	-	ABC transporter, periplasmic substrate-binding protein
2195	 61.64	0	2313509..2315278	+	589	206578720	-	KPK_2244	-	ABC transporter, permease protein
2196	 63.59	0	2315271..2316341	+	356	206580065	-	KPK_2245	-	ABC transporter, ATP-binding protein
2197	 45.33	-1	2316457..2316606	-	49	206579349	-	KPK_2246	-	hypothetical protein
2198	 47.54	-1	2316921..2317448	+	175	206579724	-	KPK_2247	-	hypothetical protein
2199	 61.56	0	2317509..2317880	-	123	206578959	-	KPK_2248	-	glyoxalase family protein
2200	 61.38	0	2318381..2319136	+	251	206575764	-	KPK_2249	-	gluconate 2-dehydrogenase, subunit 3
2201	 60.95	0	2319139..2320923	+	594	206578448	-	KPK_2250	-	gluconate 2-dehydrogenase, flavoprotein subunit
2202	 62.79	0	2320934..2322274	+	446	206580048	-	KPK_2251	-	gluconate 2-dehydrogenase, cytochrome c subunit
2203	 68.91	+1	2322358..2322981	+	207	206576540	ccmA	KPK_2252	-	heme ABC exporter, ATP-binding protein CcmA
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.