IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2035	 63.37	0	2143506..2144687	+	393	206580365	nasR	KPK_2081	-	nitrate regulatory protein
2036	 54.70	0	2144699..2144815	+	38	206579779	-	KPK_2082	-	hypothetical protein
2037	 65.16	+1	2144930..2146186	+	418	206578870	nasF	KPK_2083	-	nitrate ABC transporter, periplasmic nitrate-binding protein
2038	 64.07	+1	2146188..2147072	+	294	206577969	nasE	KPK_2084	-	nitrate ABC transporter, permease protein
2039	 61.34	0	2147082..2147870	+	262	206577858	nasD	KPK_2085	-	nitrate ABC transporter, ATP-binding protein
2040	 64.51	+1	2149075..2151948	+	957	206579889	nasB	KPK_2086	-	nitrite reductase [NAD(P)H], large subunit
2041	 68.16	+1	2151948..2154554	+	868	206576922	nasA	KPK_2087	-	nitrate reductase
2042	 52.67	0	2154557..2154706	+	49	206577562	-	KPK_2088	-	hypothetical protein
2043	 61.07	0	2154712..2156088	+	458	206579033	-	KPK_2090	-	intimin/invasin family protein
2044	 58.68	0	2156085..2156735	-	216	206579284	narL	KPK_2089	-	nitrate/nitrite response regulator protein NarL
2045	 60.37	0	2156746..2158524	-	592	206578617	narX	KPK_2091	-	nitrate/nitrite sensor protein NarX
2046	 59.54	0	2158836..2160224	+	462	206580722	narK	KPK_2092	-	nitrite extrusion protein 1
2047	 37.72	-2	2160424..2160537	-	37	206580008	-	KPK_2093	-	hypothetical protein
2048	 58.76	0	2160630..2164373	+	1247	206576866	narG	KPK_2094	-	nitrate reductase 1, alpha subunit
2049	 57.62	0	2164370..2165905	+	511	206578698	narH	KPK_2095	-	nitrate reductase 1, beta subunit
2050	 60.76	0	2165902..2166612	+	236	206580777	narJ	KPK_2096	-	nitrate reductase molybdenum cofactor assembly chaperone 1
2051	 59.00	0	2166612..2167289	+	225	206579169	narI	KPK_2098	-	respiratory nitrate reductase 1, gamma subunit
2052	 58.75	0	2167286..2168182	-	298	206579844	-	KPK_2097	-	UAA transporter family protein
2053	 59.68	0	2168290..2168733	+	147	206578664	-	KPK_2099	-	transcriptional regulator, AsnC family
2054	 52.91	0	2169923..2170765	-	280	206581039	purU	KPK_2102	-	formyltetrahydrofolate deformylase
2055	 53.16	0	2170808..2171266	-	152	206579827	-	KPK_2103	-	SEC-C motif domain protein
2056	 58.36	0	2171379..2172281	+	300	206576739	-	KPK_2104	-	phospholipase, patatin family
2057	 53.16	0	2172371..2173384	+	337	206576323	-	KPK_2105	-	response regulator
2058	 51.83	0	2173582..2174484	+	300	206578643	galU	KPK_2106	-	UTP-glucose-1-phosphate uridylyltransferase
2059	 48.04	-1	2174608..2175015	-	135	206579438	hns	KPK_2107	-	DNA-binding protein H-NS
2060	 51.94	0	2175576..2176193	+	205	206577024	tdk	KPK_2108	-	thymidine kinase
2061	 54.37	0	2176331..2179006	-	891	206580610	adhE	KPK_2109	-	aldehyde-alcohol dehydrogenase
2062	 37.04	-2	2179084..2179299	+	71	206580449	-	KPK_2110	-	hypothetical protein
2063	 55.09	0	2179483..2180130	+	215	206579510	-	KPK_2111	-	integral membrane protein, MarC family
2064	 35.77	-2	2180473..2180595	-	40	206576410	-	KPK_2112	-	hypothetical protein
2065	 52.84	0	2180877..2182511	+	544	206581055	oppA	KPK_2113	-	oligopeptide ABC transporter, periplasmic oligopeptide-binding protein
2066	 55.48	0	2182597..2183517	+	306	206577424	oppB	KPK_2114	-	oligopeptide ABC transporter, permease protein OppB
2067	 58.53	0	2183532..2184440	+	302	206576403	oppC	KPK_2115	-	oligopeptide ABC transporter, permease protein OppC
2068	 58.78	0	2184452..2185465	+	337	206578923	oppD	KPK_2116	-	oligopeptide ABC transporter, ATP-binding protein OppD
2069	 57.11	0	2185462..2186466	+	334	206580331	oppF	KPK_2117	-	oligopeptide ABC transporter, ATP-binding protein OppF
2070	 54.95	0	2186521..2187348	+	275	206580712	-	KPK_2118	-	transporter, cation channel family
2071	 52.42	0	2187412..2187741	-	109	206576352	-	KPK_2119	-	hypothetical protein
2072	 57.56	0	2187776..2189236	-	486	206576992	cls	KPK_2120	-	cardiolipin synthetase
2073	 43.18	-2	2190022..2190600	-	192	206581066	-	KPK_2121	-	hypothetical protein
2074	 57.16	0	2191382..2193811	+	809	206580343	quiA_1	KPK_2122	-	quinate/shikimate dehydrogenase (pyrroloquinoline-quinone)
2075	 57.24	0	2194082..2194378	-	98	206576477	-	KPK_2123	-	YciL domain protein
2076	 42.37	-2	2194862..2195038	-	58	206575783	-	KPK_2124	-	hypothetical protein
2077	 47.54	-1	2195019..2195384	-	121	206577437	-	KPK_2125	-	hypothetical protein
2078	 40.61	-2	2195365..2195886	-	173	206578056	-	KPK_2126	-	hypothetical protein
2079	 40.27	-2	2197541..2197987	-	148	206577393	-	KPK_2127	-	hypothetical protein
2080	 48.24	-1	2198241..2198864	-	207	206578221	-	KPK_2128	-	resolvase
2081	 42.37	-2	2199075..2199572	-	165	206577402	-	KPK_2129	-	hypothetical protein
2082	 43.32	-2	2199912..2201483	-	523	206576485	-	KPK_2130	-	site-specific recombinase, resolvase family
2083	 62.06	0	2201573..2202310	+	245	206575743	tonB	KPK_2131	-	protein TonB
2084	 57.73	0	2202353..2203225	-	290	206578084	-	KPK_2132	-	fructosamine kinase family protein
2085	 57.54	0	2203331..2203615	-	94	206577282	-	KPK_2133	-	hypothetical protein
2086	 38.46	-2	2204691..2204807	+	38	206579010	-	KPK_2135	-	hypothetical protein
2087	 55.60	0	2204996..2205754	+	252	206580913	-	KPK_2136	-	hypothetical protein
2088	 56.84	0	2206025..2206258	+	77	206576762	-	KPK_2137	-	hypothetical protein
2089	 51.63	0	2206691..2208619	+	642	206580341	thrS	KPK_2138	-	threonyl-tRNA synthetase
2090	 48.72	-1	2208698..2209165	+	155	206575853	infC	KPK_2139	-	translation initiation factor IF-3
2091	 49.49	-1	2209262..2209459	+	65	206576444	rpmI	KPK_2140	-	ribosomal protein L35
2092	 48.74	-1	2209510..2209866	+	118	206580211	rplT	KPK_2141	-	ribosomal protein L20
2093	 57.22	0	2210173..2211156	+	327	206578650	pheS	KPK_2142	-	phenylalanyl-tRNA synthetase, alpha subunit
2094	 58.29	0	2211172..2213559	+	795	206576685	pheT	KPK_2143	-	phenylalanyl-tRNA synthetase, beta subunit
2095	 51.00	0	2213564..2213863	+	99	206579803	ihfA	KPK_2144	-	integration host factor, alpha subunit
2096	 55.08	0	2213916..2214269	-	117	206577399	-	KPK_2145	-	endoribonuclease L-PSP family protein
2097	 57.26	0	2214266..2215519	-	417	206577979	-	KPK_2146	-	FAD-dependent oxidoreductase
2098	 58.14	0	2215569..2216483	-	304	206577829	-	KPK_2147	-	transcriptional regulator, LysR family
2099	 58.44	0	2216761..2218194	+	477	206575824	-	KPK_2148	-	citrate transporter family protein
2100	 64.94	+1	2218318..2219304	+	328	206580598	btuC	KPK_2149	-	vitamin B12 import system permease protein BtuC
2101	 53.93	0	2219341..2220141	-	266	206577038	-	KPK_2150	-	lipoprotein, YaeC family
2102	 56.88	0	2220378..2220929	+	183	206576250	btuE	KPK_2151	-	vitamin B12 transport periplasmic protein BtuE
2103	 63.33	0	2220929..2221678	+	249	206578256	btuD	KPK_2152	-	vitamin B12 import ATP-binding protein BtuD
2104	 61.29	0	2221760..2222224	+	154	206577435	-	KPK_2153	-	lipoprotein, NlpC/P60 family
2105	 62.79	0	2222338..2223780	+	480	206579419	-	KPK_2154	-	hypothetical protein
2106	 54.50	0	2223810..2223998	-	62	206578706	-	KPK_2155	-	hypothetical protein
2107	 62.37	0	2224145..2225191	-	348	206576613	aroH	KPK_2156	-	3-deoxy-7-phosphoheptulonate synthase, Trp-sensitive
2108	 56.83	0	2225346..2226179	-	277	206579006	-	KPK_2157	-	hypothetical protein
2109	 34.17	-2	2226324..2226443	-	39	206581022	-	KPK_2158	-	hypothetical protein
2110	 59.90	0	2226519..2228897	+	792	206580254	ppsA	KPK_2159	-	phosphoenolpyruvate synthase
2111	 61.37	0	2229281..2230393	-	370	206576471	ydiK	KPK_2160	-	inner membrane protein YdiK
2112	 38.89	-2	2230463..2230606	-	47	206575722	-	KPK_2161	-	hypothetical protein
2113	 60.29	0	2230612..2233668	+	1018	206578037	-	KPK_2162	-	putative oxidase, FAD-binding
2114	 60.10	0	2233665..2234075	+	136	206579605	ydiI	KPK_2163	-	esterase YdiI
2115	 51.81	0	2234279..2234527	+	82	206579569	-	KPK_2164	-	hypothetical protein
2116	 66.04	+1	2234625..2234945	-	106	206578830	-	KPK_2165	-	hypothetical protein
2117	 43.03	-2	2235127..2235291	+	54	206580780	-	KPK_2166	-	hypothetical protein
2118	 48.32	-1	2235554..2236534	+	326	206576766	-	KPK_2167	-	hypothetical protein
2119	 58.53	0	2236558..2237589	+	343	206577190	-	KPK_2168	-	cobalamine-independent methonine synthase
2120	 64.96	+1	2237674..2238906	-	410	206579134	-	KPK_2169	-	transporter, major facilitator family
2121	 60.10	0	2238918..2239679	-	253	206578856	-	KPK_2170	-	iron ABC transporter, ATP-binding protein
2122	 64.26	+1	2239679..2240716	-	345	206580993	-	KPK_2171	-	iron ABC transporter, permease protein
2123	 57.06	0	2240716..2241714	-	332	206580852	-	KPK_2172	-	iron ABC transporter, periplasmic iron-binding protein
2124	 64.91	+1	2241873..2242784	-	303	206580186	-	KPK_2173	-	transcriptional regulator, LysR family
2125	 63.96	+1	2242881..2243876	+	331	206576042	-	KPK_2174	-	3-beta hydroxysteroid dehydrogenase/isomerase family protein
2126	 58.21	0	2243972..2244586	+	204	206577867	-	KPK_2175	-	transcriptional regulator, TetR family
2127	 70.09	+1	2244661..2245770	+	369	206579751	-	KPK_2176	-	efflux transporter, RND family, MFP subunit
2128	 62.73	0	2245767..2248868	+	1033	206575973	-	KPK_2177	-	RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
2129	 63.97	+1	2248924..2250108	-	394	206579076	-	KPK_2178	-	putative L-lactate dehydrogenase (cytochrome)
2130	 53.57	0	2250350..2250685	+	111	206579705	-	KPK_2179	-	hypothetical protein
2131	 56.08	0	2251160..2251537	+	125	206578670	sufA	KPK_2180	-	FeS assembly scaffold SufA
2132	 58.00	0	2251540..2253027	+	495	206578883	sufB	KPK_2181	-	FeS assembly protein SufB
2133	 56.09	0	2253044..2253790	+	248	206577153	sufC	KPK_2182	-	FeS assembly ATPase SufC
2134	 62.82	0	2253765..2255039	+	424	206579410	sufD	KPK_2183	-	FeS assembly protein SufD
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.