IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1960	 62.92	0	2067168..2068154	+	328	206580107	-	KPK_2006	-	fatty acid desaturase
1961	 67.54	+1	2068147..2068947	+	266	206579185	-	KPK_2007	-	hypothetical protein
1962	 62.03	0	2068995..2070311	-	438	206578598	-	KPK_2008	-	monooxygenase, luciferase family
1963	 60.78	0	2070370..2071269	-	299	206578363	-	KPK_2009	-	quaternary amine uptake ABC transporter (QAT) family, periplasmic amine-binding protein
1964	 63.98	+1	2071330..2071998	-	222	206577751	-	KPK_2010	-	quaternary amine uptake ABC transporter (QAT) family, permease protein
1965	 63.33	0	2071998..2072627	-	209	206576816	-	KPK_2011	-	quaternary amine uptake ABC transporter (QAT) family, permease protein
1966	 62.53	0	2072620..2073708	-	362	206576203	-	KPK_2012	-	quaternary amine uptake ABC transporter (QAT) family, ATP-binding protein
1967	 55.48	0	2074466..2075404	+	312	206579483	tdcA	KPK_2013	-	transcriptional regulator tdcA
1968	 53.64	0	2075498..2076487	+	329	206578838	tdcB	KPK_2014	-	threonine dehydratase, catabolic
1969	 56.83	0	2076513..2077844	+	443	206578809	tdcC	KPK_2015	-	threonine/serine transporter
1970	 64.51	+1	2077872..2079077	+	401	206579594	tdcD	KPK_2016	-	propionate kinase
1971	 62.53	0	2079106..2081400	+	764	206580300	-	KPK_2017	-	putative formate acetyltransferase
1972	 59.46	0	2081795..2082946	+	383	206581073	-	KPK_2018	-	hydrophobic amino acid ABC transporter, periplasmic amino acid-binding protein
1973	 61.42	0	2083056..2083970	+	304	206575778	-	KPK_2019	-	hydrophobic amino acid ABC transporter, permease protein
1974	 63.87	+1	2083980..2085266	+	428	206576552	-	KPK_2020	-	hydrophobic amino acid ABC transporter, permease protein
1975	 61.42	0	2085263..2086138	+	291	206578487	-	KPK_2021	-	hydrophobic amino acid ABC transporter, ATP-binding protein
1976	 63.75	+1	2086135..2086854	+	239	206579232	-	KPK_2022	-	hydrophobic amino acid ABC transporter, ATP-binding protein
1977	 51.93	0	2086860..2087768	-	302	206579942	-	KPK_2023	-	transcriptional regulator, LysR family
1978	 61.07	0	2088037..2089680	+	547	206580493	-	KPK_2024	-	putative phosphoenolpyruvate carboxykinase (ATP)
1979	 59.12	0	2089730..2090206	-	158	206576379	-	KPK_2025	-	acetyltransferase, GNAT family
1980	 64.52	+1	2090305..2091237	+	310	206576968	-	KPK_2026	-	transcriptional regulator, LysR family
1981	 60.42	0	2091447..2092838	+	463	206576482	citH	KPK_2027	-	citrate:proton symporter
1982	 65.80	+1	2092850..2093659	+	269	206580838	-	KPK_2029	-	ABC transporter, periplasmic substrate-binding protein
1983	 61.56	0	2093634..2094533	-	299	206579870	-	KPK_2028	-	transcriptional regulator, LysR family
1984	 49.28	-1	2094646..2095128	-	160	206578678	-	KPK_2030	-	cold-shock DNA-binding domain protein
1985	 63.38	0	2095320..2096018	+	232	206579623	-	KPK_2031	-	pseudouridine synthase, RluA family
1986	 54.08	0	2096044..2096655	-	203	206577679	-	KPK_2032	-	hypothetical protein
1987	 60.72	0	2096952..2097641	+	229	206578408	dgoR	KPK_2033	-	galactonate operon transcriptional repressor
1988	 64.16	+1	2097638..2098555	+	305	206577795	dgoK	KPK_2034	-	2-dehydro-3-deoxygalactonokinase
1989	 67.80	+1	2098500..2099117	+	205	206577805	dgoA	KPK_2035	-	2-dehydro-3-deoxy-6-phosphogalactonate aldolase
1990	 60.75	0	2099114..2100262	+	382	206577224	-	KPK_2036	-	mandelate racemase/muconate lactonizing enzyme family protein
1991	 55.63	0	2100357..2101670	+	437	206579717	-	KPK_2037	-	transporter, major facilitator family
1992	 64.66	+1	2101667..2102614	+	315	206578811	-	KPK_2038	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
1993	 64.24	+1	2102672..2103001	-	109	206580907	-	KPK_2039	-	hypothetical protein
1994	 28.81	-2	2103171..2103347	+	58	206580664	-	KPK_2040	-	hypothetical protein
1995	 64.35	+1	2103631..2104971	+	446	206576125	-	KPK_2041	-	hypothetical protein
1996	 63.61	0	2104968..2105621	+	217	206578427	-	KPK_2042	-	type IV/VI secretion system protein, DotU family
1997	 65.55	+1	2105625..2107322	+	565	206577657	-	KPK_2043	-	OmpA domain protein
1998	 52.47	0	2107440..2107601	+	53	206577448	-	KPK_2045	-	hypothetical protein
1999	 31.67	-2	2107595..2107714	-	39	206579150	-	KPK_2044	-	hypothetical protein
2000	 51.56	0	2107781..2110408	+	875	206578686	-	KPK_2046	-	type VI secretion system Vgr family protein
2001	 41.04	-2	2110411..2110929	+	172	206579448	-	KPK_2047	-	LysM domain protein
2002	 53.90	0	2110992..2111915	+	307	206576814	-	KPK_2048	-	IS903, transposase
2003	 37.81	-2	2112089..2113495	+	468	206576718	-	KPK_2049	-	transglycosylase SLT domain/M23 peptidase domain protein
2004	 32.08	-2	2113716..2114351	+	211	206575904	-	KPK_2050	-	hypothetical protein
2005	 34.82	-2	2114639..2115850	+	403	206580609	-	KPK_2051	-	hypothetical protein
2006	 63.23	0	2116315..2119281	+	988	206579221	-	KPK_2052	-	ImcF-related family protein
2007	 60.71	0	2119415..2121178	+	587	206578488	-	KPK_2053	-	hypothetical protein
2008	 62.00	0	2121133..2122224	+	363	206578179	-	KPK_2054	-	type VI secretion protein, VC_A0111 family
2009	 58.47	0	2122205..2122741	+	178	206578921	-	KPK_2055	-	type VI secretion lipoprotein, VC_A0113 family
2010	 60.81	0	2122744..2123187	+	147	206576798	-	KPK_2056	-	type VI secretion system lysozyme-related protein
2011	 65.73	+1	2123207..2124592	+	461	206578041	-	KPK_2057	-	ImpA domain protein
2012	 57.49	0	2124741..2125655	+	304	206576480	-	KPK_2058	-	putative periplasmic sugar-binding protein
2013	 59.39	0	2125739..2126068	+	109	206577766	-	KPK_2059	-	hypothetical protein
2014	 54.61	0	2126151..2127245	-	364	206581061	engD	KPK_2060	-	GTP-binding protein EngD
2015	 56.92	0	2127363..2127947	-	194	206576264	pth	KPK_2061	-	peptidyl-tRNA hydrolase
2016	 55.43	0	2128220..2128495	+	91	206578768	-	KPK_2062	-	hypothetical protein
2017	 63.99	+1	2128716..2129762	+	348	206579353	-	KPK_2063	-	transcriptional regulator, MerR family/albicidin resistance protein
2018	 62.79	0	2129763..2131415	-	550	206577937	-	KPK_2064	-	sulfate permease, SulP family
2019	 53.90	0	2131693..2132640	-	315	206577157	prs	KPK_2065	-	ribose-phosphate pyrophosphokinase
2020	 61.13	0	2132824..2133672	-	282	206576137	ispE	KPK_2066	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
2021	 60.13	0	2133672..2134283	-	203	206576985	lolB	KPK_2067	-	outer membrane lipoprotein LolB
2022	 61.18	0	2134555..2135811	+	418	206580891	hemA	KPK_2068	-	glutamyl-tRNA reductase
2023	 59.83	0	2135854..2136936	+	360	206580278	prfA	KPK_2069	-	peptide chain release factor 1
2024	 65.84	+1	2136936..2137784	+	282	206578511	hemK	KPK_2070	-	protein-(glutamine-N5) methyltransferase, release factor-specific
2025	 54.20	0	2137784..2138176	+	130	206579107	-	KPK_2071	-	putative Invasion gene expression up-regulator SirB
2026	 57.81	0	2138180..2138992	+	270	206578095	-	KPK_2072	-	SirB1 protein
2027	 58.13	0	2139032..2139886	+	284	206577322	kdsA	KPK_2073	-	3-deoxy-8-phosphooctulonate synthase
2028	 59.40	0	2139974..2141074	-	366	206576549	chaA	KPK_2074	-	calcium/proton antiporter
2029	 48.92	-1	2141338..2141568	+	76	206579553	chaB	KPK_2075	-	cation transport regulator
2030	 62.41	0	2141705..2142385	+	226	206575724	chaC	KPK_2076	-	cation transport protein
2031	 38.33	-2	2142427..2142546	+	39	206578108	-	KPK_2077	-	hypothetical protein
2032	 55.14	0	2142603..2142845	-	80	206575756	-	KPK_2078	-	hypothetical protein
2033	 41.46	-2	2142927..2143049	-	40	206577850	-	KPK_2079	-	hypothetical protein
2034	 62.43	0	2143084..2143437	-	117	206579936	-	KPK_2080	-	DsrE/DsrF family protein
2035	 63.37	0	2143506..2144687	+	393	206580365	nasR	KPK_2081	-	nitrate regulatory protein
2036	 54.70	0	2144699..2144815	+	38	206579779	-	KPK_2082	-	hypothetical protein
2037	 65.16	+1	2144930..2146186	+	418	206578870	nasF	KPK_2083	-	nitrate ABC transporter, periplasmic nitrate-binding protein
2038	 64.07	+1	2146188..2147072	+	294	206577969	nasE	KPK_2084	-	nitrate ABC transporter, permease protein
2039	 61.34	0	2147082..2147870	+	262	206577858	nasD	KPK_2085	-	nitrate ABC transporter, ATP-binding protein
2040	 64.51	+1	2149075..2151948	+	957	206579889	nasB	KPK_2086	-	nitrite reductase [NAD(P)H], large subunit
2041	 68.16	+1	2151948..2154554	+	868	206576922	nasA	KPK_2087	-	nitrate reductase
2042	 52.67	0	2154557..2154706	+	49	206577562	-	KPK_2088	-	hypothetical protein
2043	 61.07	0	2154712..2156088	+	458	206579033	-	KPK_2090	-	intimin/invasin family protein
2044	 58.68	0	2156085..2156735	-	216	206579284	narL	KPK_2089	-	nitrate/nitrite response regulator protein NarL
2045	 60.37	0	2156746..2158524	-	592	206578617	narX	KPK_2091	-	nitrate/nitrite sensor protein NarX
2046	 59.54	0	2158836..2160224	+	462	206580722	narK	KPK_2092	-	nitrite extrusion protein 1
2047	 37.72	-2	2160424..2160537	-	37	206580008	-	KPK_2093	-	hypothetical protein
2048	 58.76	0	2160630..2164373	+	1247	206576866	narG	KPK_2094	-	nitrate reductase 1, alpha subunit
2049	 57.62	0	2164370..2165905	+	511	206578698	narH	KPK_2095	-	nitrate reductase 1, beta subunit
2050	 60.76	0	2165902..2166612	+	236	206580777	narJ	KPK_2096	-	nitrate reductase molybdenum cofactor assembly chaperone 1
2051	 59.00	0	2166612..2167289	+	225	206579169	narI	KPK_2098	-	respiratory nitrate reductase 1, gamma subunit
2052	 58.75	0	2167286..2168182	-	298	206579844	-	KPK_2097	-	UAA transporter family protein
2053	 59.68	0	2168290..2168733	+	147	206578664	-	KPK_2099	-	transcriptional regulator, AsnC family
2054	 52.91	0	2169923..2170765	-	280	206581039	purU	KPK_2102	-	formyltetrahydrofolate deformylase
2055	 53.16	0	2170808..2171266	-	152	206579827	-	KPK_2103	-	SEC-C motif domain protein
2056	 58.36	0	2171379..2172281	+	300	206576739	-	KPK_2104	-	phospholipase, patatin family
2057	 53.16	0	2172371..2173384	+	337	206576323	-	KPK_2105	-	response regulator
2058	 51.83	0	2173582..2174484	+	300	206578643	galU	KPK_2106	-	UTP-glucose-1-phosphate uridylyltransferase
2059	 48.04	-1	2174608..2175015	-	135	206579438	hns	KPK_2107	-	DNA-binding protein H-NS
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.