IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1933	 56.81	0	2037794..2038138	-	114	206576145	-	KPK_1979	-	hypothetical protein
1934	 57.06	0	2038289..2038819	-	176	206580016	-	KPK_1980	-	disulfide bond formation protein DsbB
1935	 61.32	0	2038948..2040498	-	516	206578325	nhaB	KPK_1981	-	Na+/H+ antiporter NhaB
1936	 46.21	-1	2040535..2040666	+	43	206577746	-	KPK_1982	-	hypothetical protein
1937	 57.22	0	2040747..2041466	+	239	206579152	fadR	KPK_1983	-	fatty acid metabolism transcriptional regulator FadR
1938	 55.77	0	2041541..2043073	-	510	206578592	-	KPK_1984	-	SpoVR-like protein
1939	 63.51	0	2043395..2044693	+	432	206580204	dadA	KPK_1985	-	D-amino acid dehydrogenase, small subunit
1940	 65.27	+1	2044703..2045773	+	356	206580802	alr_1	KPK_1986	-	alanine racemase
1941	 62.75	0	2045790..2047523	-	577	206578674	cvrA	KPK_1987	-	cell volume regulation protein A
1942	 64.59	+1	2047616..2048530	-	304	206579184	ldcA	KPK_1988	-	muramoyltetrapeptide carboxypeptidase
1943	 60.46	0	2048706..2049317	+	203	206577851	mltE	KPK_1989	-	membrane-bound lytic murein transglycosylase E
1944	 54.91	0	2049366..2050190	-	274	206578311	-	KPK_1990	-	hypothetical protein
1945	 48.12	-1	2050203..2051054	-	283	206576143	-	KPK_1991	-	hypothetical protein
1946	 62.99	0	2051234..2053354	-	706	206576741	foxA	KPK_1992	-	ferrioxamine receptor
1947	 62.23	0	2053615..2055348	-	577	206580861	treA	KPK_1993	-	trehalase
1948	 49.69	-1	2055328..2055486	+	52	206578777	-	KPK_1994	-	hypothetical protein
1949	 69.95	+1	2055546..2056460	+	304	206576637	paeX	KPK_1995	-	acetylesterase
1950	 60.07	0	2056643..2058082	+	479	206577252	-	KPK_1996	-	hypothetical protein
1951	 60.32	0	2058076..2059005	+	309	206577188	-	KPK_1997	-	hypothetical protein
1952	 61.64	0	2059002..2059817	+	271	206577792	-	KPK_1998	-	transglutaminase family protein
1953	 59.57	0	2059834..2060580	+	248	206579767	-	KPK_1999	-	hypothetical protein
1954	 63.81	+1	2060642..2061727	-	361	206580353	-	KPK_2000	-	putative sugar ABC transporter, ATP-binding protein
1955	 66.77	+1	2061714..2062676	-	320	206576148	-	KPK_2001	-	kinase, pfkB family
1956	 63.58	0	2062679..2063521	-	280	206576588	-	KPK_2002	-	putative sugar ABC transporter, permease protein
1957	 60.62	0	2063508..2064416	-	302	206577170	-	KPK_2003	-	putative sugar ABC transporter, permease protein
1958	 58.07	0	2064426..2065670	-	414	206577908	-	KPK_2004	-	putative sugar ABC transporter, periplasmic sugar-binding protein
1959	 61.95	0	2065885..2067093	+	402	206578934	-	KPK_2005	-	ROK family protein
1960	 62.92	0	2067168..2068154	+	328	206580107	-	KPK_2006	-	fatty acid desaturase
1961	 67.54	+1	2068147..2068947	+	266	206579185	-	KPK_2007	-	hypothetical protein
1962	 62.03	0	2068995..2070311	-	438	206578598	-	KPK_2008	-	monooxygenase, luciferase family
1963	 60.78	0	2070370..2071269	-	299	206578363	-	KPK_2009	-	quaternary amine uptake ABC transporter (QAT) family, periplasmic amine-binding protein
1964	 63.98	+1	2071330..2071998	-	222	206577751	-	KPK_2010	-	quaternary amine uptake ABC transporter (QAT) family, permease protein
1965	 63.33	0	2071998..2072627	-	209	206576816	-	KPK_2011	-	quaternary amine uptake ABC transporter (QAT) family, permease protein
1966	 62.53	0	2072620..2073708	-	362	206576203	-	KPK_2012	-	quaternary amine uptake ABC transporter (QAT) family, ATP-binding protein
1967	 55.48	0	2074466..2075404	+	312	206579483	tdcA	KPK_2013	-	transcriptional regulator tdcA
1968	 53.64	0	2075498..2076487	+	329	206578838	tdcB	KPK_2014	-	threonine dehydratase, catabolic
1969	 56.83	0	2076513..2077844	+	443	206578809	tdcC	KPK_2015	-	threonine/serine transporter
1970	 64.51	+1	2077872..2079077	+	401	206579594	tdcD	KPK_2016	-	propionate kinase
1971	 62.53	0	2079106..2081400	+	764	206580300	-	KPK_2017	-	putative formate acetyltransferase
1972	 59.46	0	2081795..2082946	+	383	206581073	-	KPK_2018	-	hydrophobic amino acid ABC transporter, periplasmic amino acid-binding protein
1973	 61.42	0	2083056..2083970	+	304	206575778	-	KPK_2019	-	hydrophobic amino acid ABC transporter, permease protein
1974	 63.87	+1	2083980..2085266	+	428	206576552	-	KPK_2020	-	hydrophobic amino acid ABC transporter, permease protein
1975	 61.42	0	2085263..2086138	+	291	206578487	-	KPK_2021	-	hydrophobic amino acid ABC transporter, ATP-binding protein
1976	 63.75	+1	2086135..2086854	+	239	206579232	-	KPK_2022	-	hydrophobic amino acid ABC transporter, ATP-binding protein
1977	 51.93	0	2086860..2087768	-	302	206579942	-	KPK_2023	-	transcriptional regulator, LysR family
1978	 61.07	0	2088037..2089680	+	547	206580493	-	KPK_2024	-	putative phosphoenolpyruvate carboxykinase (ATP)
1979	 59.12	0	2089730..2090206	-	158	206576379	-	KPK_2025	-	acetyltransferase, GNAT family
1980	 64.52	+1	2090305..2091237	+	310	206576968	-	KPK_2026	-	transcriptional regulator, LysR family
1981	 60.42	0	2091447..2092838	+	463	206576482	citH	KPK_2027	-	citrate:proton symporter
1982	 65.80	+1	2092850..2093659	+	269	206580838	-	KPK_2029	-	ABC transporter, periplasmic substrate-binding protein
1983	 61.56	0	2093634..2094533	-	299	206579870	-	KPK_2028	-	transcriptional regulator, LysR family
1984	 49.28	-1	2094646..2095128	-	160	206578678	-	KPK_2030	-	cold-shock DNA-binding domain protein
1985	 63.38	0	2095320..2096018	+	232	206579623	-	KPK_2031	-	pseudouridine synthase, RluA family
1986	 54.08	0	2096044..2096655	-	203	206577679	-	KPK_2032	-	hypothetical protein
1987	 60.72	0	2096952..2097641	+	229	206578408	dgoR	KPK_2033	-	galactonate operon transcriptional repressor
1988	 64.16	+1	2097638..2098555	+	305	206577795	dgoK	KPK_2034	-	2-dehydro-3-deoxygalactonokinase
1989	 67.80	+1	2098500..2099117	+	205	206577805	dgoA	KPK_2035	-	2-dehydro-3-deoxy-6-phosphogalactonate aldolase
1990	 60.75	0	2099114..2100262	+	382	206577224	-	KPK_2036	-	mandelate racemase/muconate lactonizing enzyme family protein
1991	 55.63	0	2100357..2101670	+	437	206579717	-	KPK_2037	-	transporter, major facilitator family
1992	 64.66	+1	2101667..2102614	+	315	206578811	-	KPK_2038	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
1993	 64.24	+1	2102672..2103001	-	109	206580907	-	KPK_2039	-	hypothetical protein
1994	 28.81	-2	2103171..2103347	+	58	206580664	-	KPK_2040	-	hypothetical protein
1995	 64.35	+1	2103631..2104971	+	446	206576125	-	KPK_2041	-	hypothetical protein
1996	 63.61	0	2104968..2105621	+	217	206578427	-	KPK_2042	-	type IV/VI secretion system protein, DotU family
1997	 65.55	+1	2105625..2107322	+	565	206577657	-	KPK_2043	-	OmpA domain protein
1998	 52.47	0	2107440..2107601	+	53	206577448	-	KPK_2045	-	hypothetical protein
1999	 31.67	-2	2107595..2107714	-	39	206579150	-	KPK_2044	-	hypothetical protein
2000	 51.56	0	2107781..2110408	+	875	206578686	-	KPK_2046	-	type VI secretion system Vgr family protein
2001	 41.04	-2	2110411..2110929	+	172	206579448	-	KPK_2047	-	LysM domain protein
2002	 53.90	0	2110992..2111915	+	307	206576814	-	KPK_2048	-	IS903, transposase
2003	 37.81	-2	2112089..2113495	+	468	206576718	-	KPK_2049	-	transglycosylase SLT domain/M23 peptidase domain protein
2004	 32.08	-2	2113716..2114351	+	211	206575904	-	KPK_2050	-	hypothetical protein
2005	 34.82	-2	2114639..2115850	+	403	206580609	-	KPK_2051	-	hypothetical protein
2006	 63.23	0	2116315..2119281	+	988	206579221	-	KPK_2052	-	ImcF-related family protein
2007	 60.71	0	2119415..2121178	+	587	206578488	-	KPK_2053	-	hypothetical protein
2008	 62.00	0	2121133..2122224	+	363	206578179	-	KPK_2054	-	type VI secretion protein, VC_A0111 family
2009	 58.47	0	2122205..2122741	+	178	206578921	-	KPK_2055	-	type VI secretion lipoprotein, VC_A0113 family
2010	 60.81	0	2122744..2123187	+	147	206576798	-	KPK_2056	-	type VI secretion system lysozyme-related protein
2011	 65.73	+1	2123207..2124592	+	461	206578041	-	KPK_2057	-	ImpA domain protein
2012	 57.49	0	2124741..2125655	+	304	206576480	-	KPK_2058	-	putative periplasmic sugar-binding protein
2013	 59.39	0	2125739..2126068	+	109	206577766	-	KPK_2059	-	hypothetical protein
2014	 54.61	0	2126151..2127245	-	364	206581061	engD	KPK_2060	-	GTP-binding protein EngD
2015	 56.92	0	2127363..2127947	-	194	206576264	pth	KPK_2061	-	peptidyl-tRNA hydrolase
2016	 55.43	0	2128220..2128495	+	91	206578768	-	KPK_2062	-	hypothetical protein
2017	 63.99	+1	2128716..2129762	+	348	206579353	-	KPK_2063	-	transcriptional regulator, MerR family/albicidin resistance protein
2018	 62.79	0	2129763..2131415	-	550	206577937	-	KPK_2064	-	sulfate permease, SulP family
2019	 53.90	0	2131693..2132640	-	315	206577157	prs	KPK_2065	-	ribose-phosphate pyrophosphokinase
2020	 61.13	0	2132824..2133672	-	282	206576137	ispE	KPK_2066	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
2021	 60.13	0	2133672..2134283	-	203	206576985	lolB	KPK_2067	-	outer membrane lipoprotein LolB
2022	 61.18	0	2134555..2135811	+	418	206580891	hemA	KPK_2068	-	glutamyl-tRNA reductase
2023	 59.83	0	2135854..2136936	+	360	206580278	prfA	KPK_2069	-	peptide chain release factor 1
2024	 65.84	+1	2136936..2137784	+	282	206578511	hemK	KPK_2070	-	protein-(glutamine-N5) methyltransferase, release factor-specific
2025	 54.20	0	2137784..2138176	+	130	206579107	-	KPK_2071	-	putative Invasion gene expression up-regulator SirB
2026	 57.81	0	2138180..2138992	+	270	206578095	-	KPK_2072	-	SirB1 protein
2027	 58.13	0	2139032..2139886	+	284	206577322	kdsA	KPK_2073	-	3-deoxy-8-phosphooctulonate synthase
2028	 59.40	0	2139974..2141074	-	366	206576549	chaA	KPK_2074	-	calcium/proton antiporter
2029	 48.92	-1	2141338..2141568	+	76	206579553	chaB	KPK_2075	-	cation transport regulator
2030	 62.41	0	2141705..2142385	+	226	206575724	chaC	KPK_2076	-	cation transport protein
2031	 38.33	-2	2142427..2142546	+	39	206578108	-	KPK_2077	-	hypothetical protein
2032	 55.14	0	2142603..2142845	-	80	206575756	-	KPK_2078	-	hypothetical protein
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.