IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1745	 54.77	0	1847938..1850685	-	915	206578808	-	KPK_1783	-	type IV secretion/conjugal transfer ATPase, VirB4 family
1746	 59.71	0	1850697..1850969	-	90	206579750	-	KPK_1784	-	putative type IV secretion system protein
1747	 59.38	0	1850972..1851616	-	214	206580305	-	KPK_1785	-	transglycosylase SLT domain protein
1748	 50.45	0	1851688..1851909	-	73	206580671	-	KPK_1786	-	hypothetical protein
1749	 46.19	-1	1852304..1852513	-	69	206575843	-	KPK_1787	-	phage/conjugal plasmid C-4 type zinc finger protein, TraR family
1750	 51.19	0	1852503..1853090	-	195	206576066	-	KPK_1788	-	hypothetical protein
1751	 42.38	-2	1853144..1853353	-	69	206577392	-	KPK_1789	-	transcriptional regulator, AlpA family
1752	 39.11	-2	1853686..1854603	-	305	206577638	-	KPK_1790	-	hypothetical protein
1753	 45.49	-1	1854863..1856047	-	394	206579618	-	KPK_1791	-	transporter, major facilitator family
1754	 45.47	-1	1856044..1857279	-	411	206580350	-	KPK_1792	-	hypothetical protein
1755	 47.57	-1	1857329..1858684	-	451	206581130	-	KPK_1793	-	oxidase, FAD-binding
1756	 37.80	-2	1858730..1859782	-	350	206575755	-	KPK_1794	-	hypothetical protein
1757	 40.92	-2	1859791..1860528	-	245	206577644	-	KPK_1795	-	threonyl and alanyl tRNA synthetase domain protein
1758	 43.87	-1	1860585..1861637	-	350	206577291	-	KPK_1796	-	putative histidinol-phosphate aminotransferase
1759	 46.46	-1	1861634..1863217	-	527	206577826	-	KPK_1797	-	putative histidine ammonia-lyase
1760	 47.32	-1	1863244..1864251	-	335	206579564	-	KPK_1798	-	hypothetical protein
1761	 51.64	0	1864670..1865920	-	416	206579977	-	KPK_1799	-	integrase
1762	 50.49	0	1866564..1867484	+	306	206581085	-	KPK_1800	-	transcriptional regulator, LysR family
1763	 53.66	0	1867529..1869019	-	496	206576255	-	KPK_1801	-	putative gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
1764	 52.88	0	1869012..1870658	-	548	206575800	alkJ	KPK_1802	-	alcohol dehydrogenase (acceptor)
1765	 49.86	-1	1870673..1872076	-	467	206576421	-	KPK_1803	-	permease, cytosine/purine, uracil, thiamine, allantoin family
1766	 58.08	0	1872685..1873953	+	422	206577915	-	KPK_1804	-	hypothetical protein
1767	 54.69	0	1873963..1874388	+	141	206578687	-	KPK_1805	-	endoribonuclease L-PSP family protein
1768	 61.19	0	1874385..1875059	+	224	206579441	-	KPK_1806	-	hypothetical protein
1769	 57.54	0	1875052..1876212	+	386	206580157	-	KPK_1807	-	putative acetylornithine deacetylase
1770	 41.41	-2	1877500..1877697	+	65	206577648	-	KPK_1809	-	hypothetical protein
1771	 48.38	-1	1879467..1880735	-	422	206576783	-	KPK_1811	-	integrase
1772	 61.66	0	1881303..1882220	+	305	206576166	nac	KPK_1813	-	nitrogen assimilation regulatory protein Nac
1773	 58.99	0	1882327..1883277	+	316	206579366	cbl	KPK_1814	-	transcriptional regulator Cbl
1774	 61.22	0	1883361..1884296	+	311	206578471	-	KPK_1815	-	ErfK/YbiS/YcfS/YnhG family protein
1775	 40.93	-2	1884495..1884731	-	78	206578379	-	KPK_1816	-	hypothetical protein
1776	 56.35	0	1885040..1885960	-	306	206577674	-	KPK_1817	-	transcriptional regulator, LysR family
1777	 54.62	0	1886103..1886492	+	129	206577723	-	KPK_1818	-	endoribonuclease L-PSP family protein
1778	 60.42	0	1886619..1887578	+	319	206576888	-	KPK_1819	-	oxidoreductase, zinc-binding dehydrogenase family
1779	 54.18	0	1887976..1888872	+	298	206576131	-	KPK_1820	-	amino acid ABC transporter, periplasmic amino acid-binding protein
1780	 53.57	0	1888869..1889807	+	312	206577524	-	KPK_1821	-	amino acid ABC transporter, permease protein
1781	 53.54	0	1889800..1890561	+	253	206576281	-	KPK_1823	-	amino acid ABC transporter, ATP-binding protein
1782	 59.23	0	1890556..1891899	-	447	206579967	-	KPK_1822	-	MmgE/PrpD family protein
1783	 57.72	0	1892067..1893251	-	394	206580475	-	KPK_1824	-	amidohydrolase family protein
1784	 55.49	0	1893252..1893788	-	178	206579960	-	KPK_1825	-	acetyltransferase, GNAT family
1785	 55.24	0	1893785..1895167	-	460	206579580	-	KPK_1826	-	putative adenylosuccinate lyase
1786	 57.00	0	1895533..1896618	+	361	206578724	-	KPK_1827	-	putative glycerol dehydrogenase
1787	 56.83	0	1896623..1897954	+	443	206576269	ntaA	KPK_1828	-	nitrilotriacetate monooxygenase, component A
1788	 57.59	0	1897976..1899187	+	403	206578441	aatB	KPK_1829	-	aspartate transaminase
1789	 43.75	-2	1899497..1899640	-	47	206580785	-	KPK_1830	-	hypothetical protein
1790	 32.05	-2	1900197..1900352	-	51	206577353	-	KPK_1831	-	hypothetical protein
1791	 60.23	0	1900421..1900684	+	87	206579115	-	KPK_1832	-	hypothetical protein
1792	 60.46	0	1901229..1901663	+	144	206578544	-	KPK_1833	-	hypothetical protein
1793	 40.30	-2	1901821..1902150	-	109	206580159	-	KPK_1834	-	NIPSNAP family protein
1794	 56.73	0	1902911..1904269	-	452	206581049	-	KPK_1835	-	putative methylenomycin A resistance protein Mmr
1795	 56.35	0	1904375..1905256	+	293	206575917	-	KPK_1836	-	transcriptional regulator, LysR family
1796	 53.73	0	1905666..1906616	+	316	206576651	-	KPK_1837	-	putative antirestriction protein
1797	 42.61	-2	1907918..1909060	+	380	206579331	-	KPK_1838	-	thioester reductase domain protein
1798	 44.84	-1	1909076..1910257	+	393	206579905	-	KPK_1839	-	transporter, major facilitator family
1799	 49.18	-1	1910258..1911481	+	407	206576007	-	KPK_1840	-	beta-ketoadipyl CoA thiolase homolog
1800	 44.56	-1	1911485..1912375	-	296	206580207	-	KPK_1841	-	transcriptional regulator, LysR family
1801	 54.77	0	1912830..1914098	-	422	206580819	-	KPK_1842	-	integrase
1802	 57.39	0	1914436..1915233	-	265	206575975	mtfA	KPK_1844	-	Mlc titration factor MtfA
1803	 51.75	0	1915691..1916836	-	381	206576563	-	KPK_1846	-	outer membrane protein, gram-negative porin family
1804	 33.90	-2	1917050..1917226	-	58	206578403	-	KPK_1847	-	hypothetical protein
1805	 52.50	0	1917202..1917321	+	39	206578085	-	KPK_1848	-	hypothetical protein
1806	 59.57	0	1917375..1917656	+	93	206580941	-	KPK_1849	-	hypothetical protein
1807	 61.16	0	1917699..1918406	+	235	206579019	-	KPK_1850	-	putative metal-dependent phosphohydrolase
1808	 60.18	0	1918450..1919883	+	477	206577074	dcm	KPK_1851	-	DNA-cytosine methyltransferase
1809	 61.21	0	1919864..1920358	+	164	206575947	vsr	KPK_1853	-	very short patch repair protein
1810	 61.51	0	1920333..1921244	-	303	206576380	-	KPK_1852	-	drug/metabolite transporter, DMT family
1811	 58.33	0	1921427..1922338	+	303	206577459	-	KPK_1854	-	hypothetical protein
1812	 58.57	0	1922454..1924133	+	559	206577141	-	KPK_1855	-	diguanylate cyclase
1813	 45.61	-1	1924205..1924318	+	37	206579440	-	KPK_1856	-	hypothetical protein
1814	 54.76	0	1924433..1924642	-	69	206578633	-	KPK_1857	-	hypothetical protein
1815	 50.52	0	1924788..1924979	+	63	206581021	-	KPK_1858	-	hypothetical protein
1816	 41.83	-2	1925012..1925635	-	207	206580325	-	KPK_1859	-	transcriptional regulator, LuxR family
1817	 52.63	0	1925897..1926010	+	37	206576867	-	KPK_1860	-	hypothetical protein
1818	 58.10	0	1926010..1926441	+	143	206576067	-	KPK_1861	-	putative lipoprotein
1819	 55.98	0	1926488..1927975	-	495	206579532	amyA	KPK_1862	-	alpha-amylase, cytoplasmic
1820	 54.56	0	1928176..1928976	+	266	206576658	-	KPK_1863	-	cystine ABC transporter, periplasmic cystine-binding protein
1821	 60.49	0	1929072..1930058	+	328	206575905	dcyD	KPK_1864	-	D-cysteine desulfhydrase
1822	 59.04	0	1930074..1930742	+	222	206580951	-	KPK_1865	-	amino acid ABC transporter, permease protein
1823	 58.17	0	1930739..1931491	+	250	206580125	-	KPK_1866	-	amino acid ABC transporter, ATP-binding protein
1824	 53.80	0	1931810..1932532	+	240	206576935	sdiA	KPK_1867	-	regulatory protein SdiA
1825	 49.33	-1	1932600..1932824	-	74	206580222	-	KPK_1868	-	hypothetical protein
1826	 53.58	0	1933286..1933942	+	218	206578416	uvrY	KPK_1869	-	response regulator UvrY
1827	 57.06	0	1933939..1935771	+	610	206576376	uvrC	KPK_1870	-	excinuclease ABC, C subunit
1828	 57.56	0	1935829..1936377	+	182	206579287	pgsA	KPK_1871	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1829	 39.51	-2	1937082..1937972	-	296	206577748	-	KPK_1875	-	hypothetical protein
1830	 64.17	+1	1938302..1939183	+	293	206576848	-	KPK_1876	-	dihydrodipicolinate synthetase family protein
1831	 59.79	0	1939268..1939936	+	222	206576094	-	KPK_1877	-	SEC-C domain protein
1832	 60.15	0	1939962..1941173	-	403	206578512	tyrP	KPK_1878	-	tyrosine-specific transport protein
1833	 50.42	0	1941364..1941603	+	79	206580770	-	KPK_1879	-	hypothetical protein
1834	 49.20	-1	1941640..1942137	-	165	206577636	ftnA	KPK_1880	-	ferritin-1
1835	 55.24	0	1942550..1943188	+	212	206579199	-	KPK_1881	-	ribose/galactose isomerase family protein
1836	 61.25	0	1943225..1944646	-	473	206576044	-	KPK_1882	-	transporter, major facilitator family
1837	 51.98	0	1944796..1945047	+	83	206578373	-	KPK_1883	-	hypothetical protein
1838	 54.63	0	1945085..1946596	-	503	206580788	togT	KPK_1884	-	oligogalacturonide transporter TogT
1839	 54.90	0	1946891..1947400	-	169	206576112	-	KPK_1885	-	ferritin family protein
1840	 44.72	-1	1947370..1947492	-	40	206580649	-	KPK_1886	-	hypothetical protein
1841	 35.46	-2	1947495..1947635	+	46	206579046	-	KPK_1887	-	hypothetical protein
1842	 55.86	0	1948290..1949270	+	326	206576903	araF	KPK_1888	-	L-arabinose ABC transporter, periplasmic L-arabinose-binding protein
1843	 57.89	0	1949331..1950845	+	504	206580245	araG	KPK_1889	-	L-arabinose ABC transporter, ATP-binding protein
1844	 58.72	0	1950860..1951840	+	326	206577578	araH	KPK_1890	-	L-arabinose ABC transporter, permease protein
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.