IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1682	 61.81	0	1774340..1774648	-	102	206576365	-	KPK_1716	-	putative transcriptional regulator
1683	 61.86	0	1774889..1776991	+	700	206576980	fusA_2	KPK_1717	-	translation elongation factor G
1684	 60.21	0	1777473..1778897	-	474	206578810	sbcB	KPK_1718	-	exodeoxyribonuclease I
1685	 59.40	0	1779072..1780241	+	389	206579571	dacD	KPK_1719	-	serine-type D-Ala-D-Ala carboxypeptidase
1686	 59.49	0	1780418..1780891	+	157	206576643	gyrI	KPK_1720	-	DNA gyrase inhibitory protein
1687	 61.28	0	1780990..1782048	+	352	206576746	-	KPK_1721	-	hypothetical protein
1688	 48.46	-1	1782216..1782539	+	107	206577576	-	KPK_1722	-	hypothetical protein
1689	 65.45	+1	1782851..1783591	+	246	206577887	cobS	KPK_1723	-	cobalamin 5'-phosphate synthase
1690	 66.95	+1	1783619..1784686	+	355	206579117	-	KPK_1724	-	putative nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
1691	 62.07	0	1784732..1785841	-	369	206579206	-	KPK_1725	-	putative adenosylhomocysteinase
1692	 66.12	+1	1786042..1786773	+	243	206579978	-	KPK_1726	-	HPP family protein
1693	 58.97	0	1786795..1787184	-	129	206580656	msaD	KPK_1727	-	malonate-semialdehyde dehydrogenase (acetylating)
1694	 66.14	+1	1787300..1788256	+	318	206576577	-	KPK_1729	-	transcriptional regulator, LysR family
1695	 68.29	+1	1788216..1788956	-	246	206575998	-	KPK_1728	-	hypothetical protein
1696	 62.58	0	1789003..1790322	-	439	206578519	shiA	KPK_1730	-	shikimate transporter
1697	 46.18	-1	1790629..1791126	+	165	206579203	-	KPK_1731	-	hypothetical protein
1698	 53.22	0	1791137..1793047	+	636	206578357	-	KPK_1732	-	diguanylate cyclase/cyclic diguanylate phosphodiesterase
1699	 56.16	0	1793269..1793601	+	110	206576345	-	KPK_1733	-	hypothetical protein
1700	 54.37	0	1793692..1793943	+	83	206576847	-	KPK_1734	-	hypothetical protein
1701	 64.37	+1	1793949..1794863	-	304	206580045	-	KPK_1735	-	transcriptional regulator, LysR family
1702	 70.66	+2	1794995..1795570	+	191	206580772	-	KPK_1736	-	hypothetical protein
1703	 59.14	0	1795749..1796585	+	278	206578496	-	KPK_1737	-	hydrolase, alpha/beta fold family
1704	 59.26	0	1796791..1797762	+	323	206580473	-	KPK_1739	-	GAF domain/diguanylate cyclase (GGDEF) domain protein
1705	 60.67	0	1797759..1798859	-	366	206581045	-	KPK_1738	-	hypothetical protein
1706	 53.88	0	1799386..1799643	+	85	206577196	pemI	KPK_1740	-	protein PemI
1707	 55.26	0	1799644..1799976	+	110	206579306	pemK	KPK_1741	-	protein PemK
1708	 60.82	0	1802108..1803562	-	484	206580267	amn	KPK_1745	-	AMP nucleosidase
1709	 51.22	0	1803693..1803938	-	81	206576974	pmrD	KPK_1746	-	polymyxin B resistance protein pmrD
1710	 63.15	0	1804209..1805831	+	540	206578611	-	KPK_1747	-	hypothetical protein
1711	 64.31	+1	1806792..1807769	-	325	206580525	-	KPK_1748	-	quinone oxidoreductase, YhdH family
1712	 60.59	0	1807766..1808473	-	235	206578012	-	KPK_1749	-	transcriptional regulator, TetR family
1713	 58.72	0	1809030..1810664	+	544	206577226	-	KPK_1750	-	Na+/H+ antiporter
1714	 55.12	0	1812100..1813017	+	305	206576944	-	KPK_1752	-	putative cysteine synthase B
1715	 58.51	0	1813010..1813438	+	142	206576184	-	KPK_1753	-	hypothetical protein
1716	 59.79	0	1813498..1813788	+	96	206580705	-	KPK_1754	-	thiS family protein
1717	 57.23	0	1813785..1814960	+	391	206580134	-	KPK_1755	-	putative thiazole biosynthesis adenylyltransferase ThiF/rhodanese domain protein
1718	 53.44	0	1814998..1815942	+	314	206579058	-	KPK_1756	-	hypothetical protein
1719	 59.69	0	1815929..1817419	+	496	206578489	-	KPK_1757	-	cysteine desulfurase, SufS family
1720	 45.40	-1	1817656..1822089	-	1477	206577566	-	KPK_1758	-	hypothetical protein
1721	 46.64	-1	1822758..1824380	+	540	206576927	-	KPK_1759	-	hypothetical protein
1722	 50.11	-1	1824430..1826628	+	732	206580213	-	KPK_1760	-	putative helicase
1723	 48.47	-1	1826914..1827858	+	314	206579981	-	KPK_1761	-	putative antirestriction protein
1724	 42.76	-2	1828278..1829189	-	303	206576117	-	KPK_1762	-	hypothetical protein
1725	 41.41	-2	1829309..1829989	-	226	206576695	-	KPK_1763	-	hypothetical protein
1726	 43.31	-2	1830383..1831324	-	313	206576331	-	KPK_1764	-	hypothetical protein
1727	 49.61	-1	1831716..1831844	-	42	206578158	-	KPK_1765	-	hypothetical protein
1728	 54.15	0	1832136..1833110	-	324	206577639	-	KPK_1766	-	oxidoreductase, zinc-binding dehydrogenase family
1729	 53.15	0	1833218..1834075	+	285	206579208	-	KPK_1767	-	transcriptional regulator, LysR family
1730	 51.92	0	1834119..1835135	-	338	206578539	-	KPK_1768	-	site-specific recombinase, phage integrase family
1731	 53.72	0	1835128..1836054	-	308	206580735	-	KPK_1769	-	site-specific recombinase, phage integrase family
1732	 53.48	0	1836051..1836998	-	315	206580032	-	KPK_1770	-	site-specific recombinase, phage integrase family
1733	 51.90	0	1837137..1838030	-	297	206576064	-	KPK_1771	-	DNA methylase
1734	 49.50	-1	1838023..1838826	-	267	206579785	-	KPK_1772	-	putative mobC protein
1735	 45.65	-1	1838835..1840571	-	578	206579389	-	KPK_1773	-	type IV conjugative transfer system coupling protein TraD
1736	 46.20	-1	1841340..1841642	-	100	206579590	-	KPK_1774	-	putative lipoprotein
1737	 48.53	-1	1841703..1842722	-	339	206577848	virB11	KPK_1775	-	P-type DNA transfer ATPase VirB11
1738	 61.54	0	1842712..1844019	-	435	206577255	-	KPK_1776	-	bacterial conjugation TrbI-like protein
1739	 59.60	0	1844016..1844906	-	296	206577680	virB9	KPK_1777	-	P-type conjugative transfer protein VirB9
1740	 51.32	0	1844903..1845586	-	227	206577036	virB8	KPK_1778	-	type IV secretion system protein VirB8
1741	 60.99	0	1845579..1845719	-	46	206576185	-	KPK_1779	-	putative conjugal transfer protein
1742	 55.00	0	1845809..1846828	-	339	206580674	-	KPK_1780	-	TrbL/VirB6 plasmid conjugal transfer protein
1743	 50.00	-1	1846900..1847175	-	91	206577493	-	KPK_1781	-	putative lipoprotein
1744	 46.09	-1	1847187..1847915	-	242	206578288	-	KPK_1782	-	type IV secretion system protein
1745	 54.77	0	1847938..1850685	-	915	206578808	-	KPK_1783	-	type IV secretion/conjugal transfer ATPase, VirB4 family
1746	 59.71	0	1850697..1850969	-	90	206579750	-	KPK_1784	-	putative type IV secretion system protein
1747	 59.38	0	1850972..1851616	-	214	206580305	-	KPK_1785	-	transglycosylase SLT domain protein
1748	 50.45	0	1851688..1851909	-	73	206580671	-	KPK_1786	-	hypothetical protein
1749	 46.19	-1	1852304..1852513	-	69	206575843	-	KPK_1787	-	phage/conjugal plasmid C-4 type zinc finger protein, TraR family
1750	 51.19	0	1852503..1853090	-	195	206576066	-	KPK_1788	-	hypothetical protein
1751	 42.38	-2	1853144..1853353	-	69	206577392	-	KPK_1789	-	transcriptional regulator, AlpA family
1752	 39.11	-2	1853686..1854603	-	305	206577638	-	KPK_1790	-	hypothetical protein
1753	 45.49	-1	1854863..1856047	-	394	206579618	-	KPK_1791	-	transporter, major facilitator family
1754	 45.47	-1	1856044..1857279	-	411	206580350	-	KPK_1792	-	hypothetical protein
1755	 47.57	-1	1857329..1858684	-	451	206581130	-	KPK_1793	-	oxidase, FAD-binding
1756	 37.80	-2	1858730..1859782	-	350	206575755	-	KPK_1794	-	hypothetical protein
1757	 40.92	-2	1859791..1860528	-	245	206577644	-	KPK_1795	-	threonyl and alanyl tRNA synthetase domain protein
1758	 43.87	-1	1860585..1861637	-	350	206577291	-	KPK_1796	-	putative histidinol-phosphate aminotransferase
1759	 46.46	-1	1861634..1863217	-	527	206577826	-	KPK_1797	-	putative histidine ammonia-lyase
1760	 47.32	-1	1863244..1864251	-	335	206579564	-	KPK_1798	-	hypothetical protein
1761	 51.64	0	1864670..1865920	-	416	206579977	-	KPK_1799	-	integrase
1762	 50.49	0	1866564..1867484	+	306	206581085	-	KPK_1800	-	transcriptional regulator, LysR family
1763	 53.66	0	1867529..1869019	-	496	206576255	-	KPK_1801	-	putative gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
1764	 52.88	0	1869012..1870658	-	548	206575800	alkJ	KPK_1802	-	alcohol dehydrogenase (acceptor)
1765	 49.86	-1	1870673..1872076	-	467	206576421	-	KPK_1803	-	permease, cytosine/purine, uracil, thiamine, allantoin family
1766	 58.08	0	1872685..1873953	+	422	206577915	-	KPK_1804	-	hypothetical protein
1767	 54.69	0	1873963..1874388	+	141	206578687	-	KPK_1805	-	endoribonuclease L-PSP family protein
1768	 61.19	0	1874385..1875059	+	224	206579441	-	KPK_1806	-	hypothetical protein
1769	 57.54	0	1875052..1876212	+	386	206580157	-	KPK_1807	-	putative acetylornithine deacetylase
1770	 41.41	-2	1877500..1877697	+	65	206577648	-	KPK_1809	-	hypothetical protein
1771	 48.38	-1	1879467..1880735	-	422	206576783	-	KPK_1811	-	integrase
1772	 61.66	0	1881303..1882220	+	305	206576166	nac	KPK_1813	-	nitrogen assimilation regulatory protein Nac
1773	 58.99	0	1882327..1883277	+	316	206579366	cbl	KPK_1814	-	transcriptional regulator Cbl
1774	 61.22	0	1883361..1884296	+	311	206578471	-	KPK_1815	-	ErfK/YbiS/YcfS/YnhG family protein
1775	 40.93	-2	1884495..1884731	-	78	206578379	-	KPK_1816	-	hypothetical protein
1776	 56.35	0	1885040..1885960	-	306	206577674	-	KPK_1817	-	transcriptional regulator, LysR family
1777	 54.62	0	1886103..1886492	+	129	206577723	-	KPK_1818	-	endoribonuclease L-PSP family protein
1778	 60.42	0	1886619..1887578	+	319	206576888	-	KPK_1819	-	oxidoreductase, zinc-binding dehydrogenase family
1779	 54.18	0	1887976..1888872	+	298	206576131	-	KPK_1820	-	amino acid ABC transporter, periplasmic amino acid-binding protein
1780	 53.57	0	1888869..1889807	+	312	206577524	-	KPK_1821	-	amino acid ABC transporter, permease protein
1781	 53.54	0	1889800..1890561	+	253	206576281	-	KPK_1823	-	amino acid ABC transporter, ATP-binding protein
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.