IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1584	 69.64	+1	1650799..1651572	+	257	206576198	thiM	KPK_1618	-	hydroxyethylthiazole kinase
1585	 66.92	+1	1651569..1652369	+	266	206580015	thiD	KPK_1619	-	phosphomethylpyrimidine kinase
1586	 59.26	0	1652517..1653569	+	350	206576495	fbaB	KPK_1620	-	fructose-bisphosphate aldolase, class 1
1587	 57.43	0	1653651..1654592	-	313	206580098	dalR	KPK_1621	-	D-arabitol transcriptional repressor DalR
1588	 59.28	0	1654799..1656166	+	455	206577591	dalD	KPK_1622	-	D-arabinitol 4-dehydrogenase
1589	 64.96	+1	1656176..1657639	+	487	206580882	xylB_2	KPK_1623	-	xylulokinase
1590	 57.04	0	1657710..1658987	+	425	206578721	dalT	KPK_1624	-	D-arabinitol transporter
1591	 59.28	0	1659036..1659698	+	220	206576023	-	KPK_1625	-	HAD hydrolase, family IA
1592	 59.13	0	1659996..1661150	+	384	206576511	-	KPK_1626	-	mandelate racemase/muconate lactonizing enzyme family protein
1593	 58.96	0	1661270..1662892	+	540	206577132	-	KPK_1627	-	ABC transporter, periplasmic substrate-binding protein
1594	 59.44	0	1662889..1663926	+	345	206576304	-	KPK_1628	-	ABC transporter, permease protein
1595	 62.03	0	1663923..1664828	+	301	206579051	-	KPK_1629	-	ABC transporter, permease protein
1596	 59.43	0	1664821..1665663	+	280	206579192	-	KPK_1630	-	ABC transporter, ATP-binding protein
1597	 59.17	0	1665674..1666447	+	257	206579887	-	KPK_1631	-	ABC transporter, ATP-binding protein
1598	 60.29	0	1666687..1667580	-	297	206580358	-	KPK_1632	-	diacylglycerol kinase catalytic domain protein
1599	 58.74	0	1667826..1669187	-	453	206581059	-	KPK_1633	-	peptidase, U32 family
1600	 60.58	0	1669506..1670228	-	240	206578805	baeR	KPK_1634	-	transcriptional regulatory protein BaeR
1601	 65.14	+1	1670225..1671727	-	500	206577334	baeS	KPK_1635	-	signal transduction histidine-protein kinase BaeS
1602	 63.70	+1	1671724..1673139	-	471	206577971	-	KPK_1636	-	putative multidrug resistance protein MdtD
1603	 63.55	0	1673141..1676218	-	1025	206575793	mdtC	KPK_1637	-	multidrug resistance protein MdtC
1604	 64.43	+1	1676219..1679341	-	1040	206576409	mdtB	KPK_1638	-	multidrug resistance protein MdtB
1605	 64.73	+1	1679341..1680579	-	412	206580406	mdtA	KPK_1639	-	multidrug resistance protein MdtA
1606	 59.53	0	1680880..1682154	+	424	206581038	-	KPK_1640	-	transporter, dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family
1607	 49.67	-1	1682429..1683040	-	203	206576390	-	KPK_1641	-	hypothetical protein
1608	 38.41	-2	1683244..1683381	+	45	206578023	-	KPK_1642	-	hypothetical protein
1609	 62.11	0	1683534..1684235	-	233	206577380	-	KPK_1643	-	DNA-binding response regulator
1610	 63.54	0	1684250..1686106	-	618	206580390	-	KPK_1644	-	sensor histidine kinase
1611	 63.64	+1	1686396..1687748	-	450	206579468	-	KPK_1645	-	hypothetical protein
1612	 67.37	+1	1687886..1688734	+	282	206575858	alkA	KPK_1646	-	DNA-3-methyladenine glycosylase 2
1613	 52.49	0	1688849..1689490	+	213	206581119	udk	KPK_1647	-	uridine kinase
1614	 63.40	0	1689581..1690162	+	193	206577406	dcd	KPK_1648	-	deoxycytidine triphosphate deaminase
1615	 62.34	0	1690193..1692040	+	615	206576558	asmA	KPK_1649	-	AsmA protein
1616	 57.64	0	1692444..1694027	-	527	206579955	-	KPK_1650	-	membrane protein, TerC family/CBS/transporter associated domain protein
1617	 57.41	0	1694798..1695694	+	298	206579337	galF	KPK_1651	-	UTP--glucose-1-phosphate uridylyltransferase
1618	 56.35	0	1696088..1696717	+	209	206578168	-	KPK_1652	-	PAP2 family protein
1619	 47.37	-1	1697428..1697541	+	37	206578013	-	KPK_1653	-	hypothetical protein
1620	 53.84	0	1697680..1699113	+	477	206575839	-	KPK_1654	-	hypothetical protein
1621	 42.77	-2	1699259..1700392	+	377	206576395	gfcE	KPK_1655	-	capsule polysaccharide biosynthesis/export protein GfcE
1622	 36.19	-2	1700848..1703019	+	723	206580442	etk	KPK_1656	-	tyrosine-protein kinase Etk
1623	 31.23	-2	1703104..1704054	+	316	206581025	-	KPK_1657	-	hypothetical protein
1624	 29.56	-2	1704058..1705224	+	388	206580422	-	KPK_1658	-	polysaccharide biosynthesis protein
1625	 32.21	-2	1705235..1706389	+	384	206580911	-	KPK_1659	-	glycosyl transferase, group 1 family protein
1626	 28.90	-2	1706376..1707638	+	420	206578893	-	KPK_1660	-	hypothetical protein
1627	 32.32	-2	1707638..1708726	+	362	206579528	-	KPK_1661	-	glycosyl transferase, group 1 family protein
1628	 34.02	-2	1708738..1709907	+	389	206578081	-	KPK_1662	-	hypothetical protein
1629	 30.99	-2	1709917..1710684	+	255	206577310	-	KPK_1663	-	glycosyl transferase, WecB/TagA/CpsF family
1630	 33.91	-2	1710705..1712453	+	582	206577596	-	KPK_1664	-	hypothetical protein
1631	 29.01	-2	1712461..1713525	+	354	206576787	-	KPK_1665	-	putative acyltransferase
1632	 34.69	-2	1713735..1715132	+	465	206576384	-	KPK_1666	-	capsular polysaccharide biosynthesis protein
1633	 50.60	0	1715298..1716704	+	468	206580566	gnd	KPK_1667	-	6-phosphogluconate dehydrogenase, decarboxylating
1634	 62.08	0	1716930..1718345	+	471	206579953	cpsB_1	KPK_1668	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
1635	 62.65	0	1718368..1719738	+	456	206577883	cpsG_1	KPK_1669	-	phosphomannomutase
1636	 50.39	-1	1719902..1721068	+	388	206577374	ugd	KPK_1670	-	UDP-glucose 6-dehydrogenase
1637	 31.33	-2	1721345..1722391	+	348	206580935	-	KPK_1671	-	hypothetical protein
1638	 55.72	0	1723560..1724564	-	334	206580708	-	KPK_1672	-	putative uridine diphosphate galacturonate 4-epimerase
1639	 49.33	-1	1724520..1724669	+	49	206576338	-	KPK_1673	-	hypothetical protein
1640	 31.71	-2	1724867..1724989	-	40	206576930	-	KPK_1674	-	hypothetical protein
1641	 61.58	0	1725642..1727057	+	471	206577570	cpsB_2	KPK_1675	-	mannose-1-phosphate guanylyltransferase
1642	 62.76	0	1727080..1728462	+	460	206578166	cpsG_2	KPK_1676	-	phosphomannomutase
1643	 47.84	-1	1728468..1729253	+	261	206580285	-	KPK_1677	-	ABC-2 type transporter, permease protein
1644	 53.63	0	1729256..1730551	+	431	206580877	-	KPK_1678	-	ABC transporter, ATP-binding protein
1645	 54.11	0	1730571..1732697	+	708	206580714	-	KPK_1679	-	putative methyltransferase
1646	 54.62	0	1732708..1735230	+	840	206575895	-	KPK_1680	-	mannosyltransferase A
1647	 54.97	0	1735277..1736422	+	381	206580480	-	KPK_1681	-	mannosyltransferase B
1648	 54.39	0	1736432..1737547	+	371	206576301	-	KPK_1682	-	glycosyl transferase, group 1 family protein
1649	 59.46	0	1737586..1738182	-	198	206577073	hisIE	KPK_1683	-	phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase
1650	 60.49	0	1738176..1738952	-	258	206577737	hisF	KPK_1684	-	imidazoleglycerol phosphate synthase, cyclase subunit
1651	 63.41	0	1738934..1739671	-	245	206577530	hisA	KPK_1685	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
1652	 60.58	0	1739671..1740261	-	196	206578119	hisH	KPK_1686	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
1653	 60.77	0	1740261..1741328	-	355	206579178	hisB	KPK_1687	-	histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase
1654	 62.62	0	1741325..1742386	-	353	206580133	hisC	KPK_1688	-	histidinol-phosphate aminotransferase
1655	 66.05	+1	1742383..1743687	-	434	206576383	hisD	KPK_1689	-	histidinol dehydrogenase
1656	 60.22	0	1743727..1744626	-	299	206576918	hisG	KPK_1690	-	ATP phosphoribosyltransferase
1657	 43.14	-2	1744772..1744822	-	16	206579125	hisL	KPK_1691	-	histidine operon leader peptide
1658	 62.55	0	1744999..1745823	+	274	206578139	-	KPK_1692	-	NAD dependent epimerase/dehydratase family protein
1659	 64.09	+1	1745862..1746752	+	296	206579038	-	KPK_1693	-	transcriptional regulator, LysR family
1660	 56.51	0	1747042..1748400	+	452	206580404	-	KPK_1694	-	amino acid permease family protein
1661	 68.12	+1	1749879..1750016	-	45	206580986	-	KPK_1695	-	hypothetical protein
1662	 65.70	+1	1750779..1751294	-	171	206580955	nifQ	KPK_1696	-	nitrogen fixation protein NifQ
1663	 66.03	+1	1751294..1752700	-	468	206576626	nifB	KPK_1697	-	nitrogenase cofactor biosynthesis protein NifB
1664	 64.83	+1	1752865..1754439	-	524	206578014	nifA	KPK_1698	-	Nif-specific regulatory protein
1665	 64.78	+1	1754436..1755920	-	494	206578926	nifL	KPK_1699	-	nitrogen fixation negative regulator NifL
1666	 64.97	+1	1756240..1756770	+	176	206579770	nifF	KPK_1700	-	flavodoxin
1667	 70.29	+2	1756793..1757593	-	266	206580185	nifM	KPK_1701	-	nitrogen fixation protein NifM
1668	 64.64	+1	1757593..1758036	-	147	206578586	-	KPK_1702	-	putative nifZ protein
1669	 63.18	0	1758033..1758290	-	85	206580682	-	KPK_1703	-	putative nifW protein
1670	 68.41	+1	1758293..1759438	-	381	206579843	nifV	KPK_1704	-	homocitrate synthase
1671	 64.75	+1	1759451..1760653	-	400	206577044	nifS	KPK_1705	-	cysteine desulfurase NifS
1672	 62.74	0	1760669..1761508	-	279	206576904	nifU	KPK_1706	-	Fe-S cluster assembly protein NifU
1673	 64.97	+1	1761703..1762173	-	156	206576259	nifX	KPK_1707	-	nifX protein
1674	 66.09	+1	1762160..1763545	-	461	206578245	nifN	KPK_1708	-	nitrogenase molybdenum-iron cofactor biosynthesis protein NifN
1675	 66.96	+1	1763555..1764928	-	457	206577450	nifE	KPK_1709	-	nitrogenase MoFe cofactor biosynthesis protein NifE
1676	 64.56	+1	1765509..1766171	-	220	206577606	-	KPK_1710	-	NifY protein
1677	 64.38	+1	1766182..1766400	-	72	206577324	nifT	KPK_1711	-	probable nitrogen fixation protein FixT
1678	 59.18	0	1766440..1768002	-	520	206579310	nifK	KPK_1712	-	nitrogenase molybdenum-iron protein beta chain
1679	 58.87	0	1768058..1769506	-	482	206580266	nifD	KPK_1713	-	nitrogenase molybdenum-iron protein alpha chain
1680	 58.16	0	1769523..1770404	-	293	206580625	nifH	KPK_1714	-	nitrogenase iron protein
1681	 63.62	+1	1770808..1774323	+	1171	206575958	nifJ	KPK_1715	-	pyruvate-flavodoxin oxidoreductase
1682	 61.81	0	1774340..1774648	-	102	206576365	-	KPK_1716	-	putative transcriptional regulator
1683	 61.86	0	1774889..1776991	+	700	206576980	fusA_2	KPK_1717	-	translation elongation factor G
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.