IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1552	 54.81	0	1615670..1616074	-	134	206575796	-	KPK_1586	-	LrgA family protein
1553	 60.45	0	1616433..1617365	+	310	206577930	dusC	KPK_1587	-	tRNA-dihydrouridine synthase C
1554	 61.25	0	1617722..1619086	+	454	206577315	-	KPK_1588	-	carbohydrate-selective porin, OprB family
1555	 53.24	0	1619242..1620075	+	277	206579423	bglG	KPK_1589	-	cryptic beta-glucoside bgl operon antiterminator
1556	 59.03	0	1620218..1622077	+	619	206578842	bglF	KPK_1590	-	PTS system, beta-glucoside-specific EIIBCA component
1557	 58.78	0	1622093..1623487	+	464	206580957	bglB	KPK_1591	-	6-phospho-beta-glucosidase BglB
1558	 60.68	0	1623521..1624255	-	244	206580196	-	KPK_1592	-	putative methyltransferase
1559	 61.11	0	1624384..1625823	+	479	206580355	-	KPK_1593	-	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
1560	 61.75	0	1625856..1626425	-	189	206579610	-	KPK_1594	-	hypothetical protein
1561	 57.99	0	1626579..1627166	+	195	206576078	-	KPK_1595	-	hypothetical protein
1562	 60.15	0	1627355..1628305	+	316	206580756	pbpG	KPK_1596	-	penicillin-binding protein 7
1563	 61.44	0	1628647..1629201	-	184	206576629	-	KPK_1597	-	putative phosphinothricin N-acetyltransferase
1564	 59.56	0	1629287..1631032	-	581	206576041	dld	KPK_1598	-	D-lactate dehydrogenase
1565	 60.27	0	1631227..1633524	+	765	206577783	bglX	KPK_1599	-	beta-glucosidase, periplasmic
1566	 60.89	0	1633661..1634578	+	305	206577208	-	KPK_1600	-	ABC transporter, quaternary amine uptake transporter (QAT) family, substrate-binding protein
1567	 67.36	+1	1634586..1635743	+	385	206580027	-	KPK_1601	-	ABC transporter, quaternary amine uptake transporter (QAT) family, permease protein
1568	 66.98	+1	1635736..1636683	+	315	206577299	-	KPK_1602	-	ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein
1569	 66.12	+1	1636667..1637404	+	245	206576005	-	KPK_1604	-	ABC transporter, quaternary amine uptake transporter (QAT) family, permease protein
1570	 57.02	0	1637379..1637492	-	37	206580294	-	KPK_1603	-	hypothetical protein
1571	 60.86	0	1637722..1639410	+	562	206576413	-	KPK_1605	-	sensor histidine kinase
1572	 59.72	0	1639404..1640123	+	239	206577018	-	KPK_1606	-	DNA-binding response regulator
1573	 54.99	0	1640171..1640641	+	156	206580689	-	KPK_1607	-	hypothetical protein
1574	 59.14	0	1640752..1642785	-	677	206581116	metG	KPK_1608	-	methionyl-tRNA synthetase
1575	 61.62	0	1642939..1644048	+	369	206579578	-	KPK_1610	-	mrp protein
1576	 64.07	+1	1644045..1644506	-	153	206578859	-	KPK_1609	-	acetyltransferase, GNAT family
1577	 55.03	0	1644481..1644798	-	105	206577293	-	KPK_1611	-	hypothetical protein
1578	 62.78	0	1644982..1645881	+	299	206578506	-	KPK_1613	-	transcriptional regulator, LysR family
1579	 63.02	0	1645871..1647214	-	447	206575951	-	KPK_1612	-	inorganic anion transporter, sulfate permease (SulP) family
1580	 66.17	+1	1647217..1649028	-	603	206580622	-	KPK_1614	-	putative adenine deaminase
1581	 62.94	0	1649152..1650063	+	303	206579656	-	KPK_1616	-	transcriptional regulator, LysR family
1582	 58.39	0	1650060..1650482	-	140	206577545	-	KPK_1615	-	putative universal stress family protein
1583	 54.76	0	1650452..1650577	-	41	206576813	-	KPK_1617	-	hypothetical protein
1584	 69.64	+1	1650799..1651572	+	257	206576198	thiM	KPK_1618	-	hydroxyethylthiazole kinase
1585	 66.92	+1	1651569..1652369	+	266	206580015	thiD	KPK_1619	-	phosphomethylpyrimidine kinase
1586	 59.26	0	1652517..1653569	+	350	206576495	fbaB	KPK_1620	-	fructose-bisphosphate aldolase, class 1
1587	 57.43	0	1653651..1654592	-	313	206580098	dalR	KPK_1621	-	D-arabitol transcriptional repressor DalR
1588	 59.28	0	1654799..1656166	+	455	206577591	dalD	KPK_1622	-	D-arabinitol 4-dehydrogenase
1589	 64.96	+1	1656176..1657639	+	487	206580882	xylB_2	KPK_1623	-	xylulokinase
1590	 57.04	0	1657710..1658987	+	425	206578721	dalT	KPK_1624	-	D-arabinitol transporter
1591	 59.28	0	1659036..1659698	+	220	206576023	-	KPK_1625	-	HAD hydrolase, family IA
1592	 59.13	0	1659996..1661150	+	384	206576511	-	KPK_1626	-	mandelate racemase/muconate lactonizing enzyme family protein
1593	 58.96	0	1661270..1662892	+	540	206577132	-	KPK_1627	-	ABC transporter, periplasmic substrate-binding protein
1594	 59.44	0	1662889..1663926	+	345	206576304	-	KPK_1628	-	ABC transporter, permease protein
1595	 62.03	0	1663923..1664828	+	301	206579051	-	KPK_1629	-	ABC transporter, permease protein
1596	 59.43	0	1664821..1665663	+	280	206579192	-	KPK_1630	-	ABC transporter, ATP-binding protein
1597	 59.17	0	1665674..1666447	+	257	206579887	-	KPK_1631	-	ABC transporter, ATP-binding protein
1598	 60.29	0	1666687..1667580	-	297	206580358	-	KPK_1632	-	diacylglycerol kinase catalytic domain protein
1599	 58.74	0	1667826..1669187	-	453	206581059	-	KPK_1633	-	peptidase, U32 family
1600	 60.58	0	1669506..1670228	-	240	206578805	baeR	KPK_1634	-	transcriptional regulatory protein BaeR
1601	 65.14	+1	1670225..1671727	-	500	206577334	baeS	KPK_1635	-	signal transduction histidine-protein kinase BaeS
1602	 63.70	+1	1671724..1673139	-	471	206577971	-	KPK_1636	-	putative multidrug resistance protein MdtD
1603	 63.55	0	1673141..1676218	-	1025	206575793	mdtC	KPK_1637	-	multidrug resistance protein MdtC
1604	 64.43	+1	1676219..1679341	-	1040	206576409	mdtB	KPK_1638	-	multidrug resistance protein MdtB
1605	 64.73	+1	1679341..1680579	-	412	206580406	mdtA	KPK_1639	-	multidrug resistance protein MdtA
1606	 59.53	0	1680880..1682154	+	424	206581038	-	KPK_1640	-	transporter, dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family
1607	 49.67	-1	1682429..1683040	-	203	206576390	-	KPK_1641	-	hypothetical protein
1608	 38.41	-2	1683244..1683381	+	45	206578023	-	KPK_1642	-	hypothetical protein
1609	 62.11	0	1683534..1684235	-	233	206577380	-	KPK_1643	-	DNA-binding response regulator
1610	 63.54	0	1684250..1686106	-	618	206580390	-	KPK_1644	-	sensor histidine kinase
1611	 63.64	+1	1686396..1687748	-	450	206579468	-	KPK_1645	-	hypothetical protein
1612	 67.37	+1	1687886..1688734	+	282	206575858	alkA	KPK_1646	-	DNA-3-methyladenine glycosylase 2
1613	 52.49	0	1688849..1689490	+	213	206581119	udk	KPK_1647	-	uridine kinase
1614	 63.40	0	1689581..1690162	+	193	206577406	dcd	KPK_1648	-	deoxycytidine triphosphate deaminase
1615	 62.34	0	1690193..1692040	+	615	206576558	asmA	KPK_1649	-	AsmA protein
1616	 57.64	0	1692444..1694027	-	527	206579955	-	KPK_1650	-	membrane protein, TerC family/CBS/transporter associated domain protein
1617	 57.41	0	1694798..1695694	+	298	206579337	galF	KPK_1651	-	UTP--glucose-1-phosphate uridylyltransferase
1618	 56.35	0	1696088..1696717	+	209	206578168	-	KPK_1652	-	PAP2 family protein
1619	 47.37	-1	1697428..1697541	+	37	206578013	-	KPK_1653	-	hypothetical protein
1620	 53.84	0	1697680..1699113	+	477	206575839	-	KPK_1654	-	hypothetical protein
1621	 42.77	-2	1699259..1700392	+	377	206576395	gfcE	KPK_1655	-	capsule polysaccharide biosynthesis/export protein GfcE
1622	 36.19	-2	1700848..1703019	+	723	206580442	etk	KPK_1656	-	tyrosine-protein kinase Etk
1623	 31.23	-2	1703104..1704054	+	316	206581025	-	KPK_1657	-	hypothetical protein
1624	 29.56	-2	1704058..1705224	+	388	206580422	-	KPK_1658	-	polysaccharide biosynthesis protein
1625	 32.21	-2	1705235..1706389	+	384	206580911	-	KPK_1659	-	glycosyl transferase, group 1 family protein
1626	 28.90	-2	1706376..1707638	+	420	206578893	-	KPK_1660	-	hypothetical protein
1627	 32.32	-2	1707638..1708726	+	362	206579528	-	KPK_1661	-	glycosyl transferase, group 1 family protein
1628	 34.02	-2	1708738..1709907	+	389	206578081	-	KPK_1662	-	hypothetical protein
1629	 30.99	-2	1709917..1710684	+	255	206577310	-	KPK_1663	-	glycosyl transferase, WecB/TagA/CpsF family
1630	 33.91	-2	1710705..1712453	+	582	206577596	-	KPK_1664	-	hypothetical protein
1631	 29.01	-2	1712461..1713525	+	354	206576787	-	KPK_1665	-	putative acyltransferase
1632	 34.69	-2	1713735..1715132	+	465	206576384	-	KPK_1666	-	capsular polysaccharide biosynthesis protein
1633	 50.60	0	1715298..1716704	+	468	206580566	gnd	KPK_1667	-	6-phosphogluconate dehydrogenase, decarboxylating
1634	 62.08	0	1716930..1718345	+	471	206579953	cpsB_1	KPK_1668	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
1635	 62.65	0	1718368..1719738	+	456	206577883	cpsG_1	KPK_1669	-	phosphomannomutase
1636	 50.39	-1	1719902..1721068	+	388	206577374	ugd	KPK_1670	-	UDP-glucose 6-dehydrogenase
1637	 31.33	-2	1721345..1722391	+	348	206580935	-	KPK_1671	-	hypothetical protein
1638	 55.72	0	1723560..1724564	-	334	206580708	-	KPK_1672	-	putative uridine diphosphate galacturonate 4-epimerase
1639	 49.33	-1	1724520..1724669	+	49	206576338	-	KPK_1673	-	hypothetical protein
1640	 31.71	-2	1724867..1724989	-	40	206576930	-	KPK_1674	-	hypothetical protein
1641	 61.58	0	1725642..1727057	+	471	206577570	cpsB_2	KPK_1675	-	mannose-1-phosphate guanylyltransferase
1642	 62.76	0	1727080..1728462	+	460	206578166	cpsG_2	KPK_1676	-	phosphomannomutase
1643	 47.84	-1	1728468..1729253	+	261	206580285	-	KPK_1677	-	ABC-2 type transporter, permease protein
1644	 53.63	0	1729256..1730551	+	431	206580877	-	KPK_1678	-	ABC transporter, ATP-binding protein
1645	 54.11	0	1730571..1732697	+	708	206580714	-	KPK_1679	-	putative methyltransferase
1646	 54.62	0	1732708..1735230	+	840	206575895	-	KPK_1680	-	mannosyltransferase A
1647	 54.97	0	1735277..1736422	+	381	206580480	-	KPK_1681	-	mannosyltransferase B
1648	 54.39	0	1736432..1737547	+	371	206576301	-	KPK_1682	-	glycosyl transferase, group 1 family protein
1649	 59.46	0	1737586..1738182	-	198	206577073	hisIE	KPK_1683	-	phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase
1650	 60.49	0	1738176..1738952	-	258	206577737	hisF	KPK_1684	-	imidazoleglycerol phosphate synthase, cyclase subunit
1651	 63.41	0	1738934..1739671	-	245	206577530	hisA	KPK_1685	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.