IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1501	 57.04	0	1559385..1559924	+	179	206580615	-	KPK_1533	-	hypothetical protein
1502	 60.20	0	1560119..1560907	+	262	206578703	-	KPK_1534	-	putative pyrroline-5-carboxylate reductase
1503	 58.77	0	1561357..1563117	-	586	206579383	-	KPK_1536	-	sulfatase family protein
1504	 51.89	0	1563136..1563399	-	87	206577280	-	KPK_1537	-	hypothetical protein
1505	 57.84	0	1563550..1564557	+	335	206578207	ndpA	KPK_1538	-	nucleoid-associated protein NdpA
1506	 62.60	0	1564577..1565338	-	253	206576320	-	KPK_1539	-	transcriptional regulator, DeoR family
1507	 58.79	0	1565420..1566016	+	198	206576898	yffH	KPK_1540	-	hydrolase YffH
1508	 60.45	0	1566037..1567323	-	428	206579122	-	KPK_1541	-	beta-lactamase
1509	 59.46	0	1567427..1568314	+	295	206579670	-	KPK_1542	-	transcriptional regulator, LysR family
1510	 51.23	0	1568373..1568657	-	94	206577853	-	KPK_1543	-	ribosomal L25p family
1511	 60.69	0	1568794..1570551	-	585	206575882	-	KPK_1544	-	putative helicase
1512	 59.44	0	1570698..1571417	+	239	206576604	rsuA	KPK_1545	-	ribosomal small subunit pseudouridine synthase A
1513	 59.06	0	1571414..1572610	+	398	206580663	bcr	KPK_1546	-	bicyclomycin resistance protein
1514	 56.23	0	1572941..1573285	+	114	206578739	-	KPK_1547	-	hypothetical protein
1515	 62.58	0	1573289..1574878	-	529	206579480	-	KPK_1548	-	ABC transporter, ATP-binding protein
1516	 61.50	0	1574880..1575905	-	341	206577563	-	KPK_1549	-	ABC transporter, permease protein
1517	 57.72	0	1575905..1576999	-	364	206576271	-	KPK_1550	-	ABC transporter, permease protein
1518	 58.80	0	1577009..1578814	-	601	206575776	-	KPK_1551	-	ABC transporter, periplasmic substrate-binding protein
1519	 55.73	0	1578883..1580445	-	520	206576538	-	KPK_1552	-	putative cyclic diguanylate phosphodiesterase
1520	 55.09	0	1580634..1581203	-	189	206576583	spr	KPK_1553	-	lipoprotein Spr
1521	 43.86	-1	1581517..1581630	-	37	206579591	-	KPK_1554	-	hypothetical protein
1522	 58.47	0	1581630..1582337	-	235	206578818	-	KPK_1555	-	PAP2 family protein
1523	 62.07	0	1582381..1583358	-	325	206581106	-	KPK_1556	-	CobW/P47K family protein
1524	 62.64	0	1583479..1584945	-	488	206580348	-	KPK_1557	-	mannitol dehydrogenase family protein
1525	 58.10	0	1585153..1586343	+	396	206575869	uxuA	KPK_1558	-	mannonate dehydratase
1526	 52.36	0	1586984..1587556	-	190	206580520	yeiP	KPK_1559	-	elongation factor P-like protein YeiP
1527	 61.57	0	1587704..1587958	+	84	206578136	-	KPK_1560	-	hypothetical protein
1528	 58.09	0	1587961..1588893	-	310	206576635	-	KPK_1561	-	transcriptional regulator, LysR family
1529	 38.46	-2	1589024..1589140	+	38	206579583	-	KPK_1562	-	hypothetical protein
1530	 47.54	-1	1589107..1589451	+	114	206578484	-	KPK_1563	-	hypothetical protein
1531	 56.55	0	1589453..1590589	+	378	206580782	-	KPK_1564	-	auxiliary transport protein, membrane fusion protein (MFP) family
1532	 60.58	0	1590624..1591805	-	393	206579909	setB	KPK_1565	-	sugar efflux transporter B
1533	 63.13	0	1592140..1593270	+	376	206578123	fruB	KPK_1566	-	PTS system fructose-specific phosphotransferase enzyme IIA component
1534	 61.02	0	1593271..1594209	+	312	206577537	fruK	KPK_1567	-	1-phosphofructokinase
1535	 62.65	0	1594226..1595920	+	564	206579377	fruA	KPK_1568	-	PTS system fructose-specific EIIBC component
1536	 61.05	0	1595973..1596827	-	284	206578779	nfo	KPK_1569	-	endonuclease 4
1537	 60.86	0	1596899..1597948	-	349	206578486	-	KPK_1570	-	hypothetical protein
1538	 61.01	0	1598214..1599080	+	288	206580583	-	KPK_1571	-	transcriptional regulator, LysR family
1539	 58.03	0	1599258..1600727	+	489	206576906	lysP	KPK_1572	-	lysine-specific permease
1540	 58.92	0	1601027..1603000	+	657	206576322	cirA	KPK_1573	-	colicin I receptor
1541	 61.39	0	1603071..1603904	-	277	206577411	fghA	KPK_1574	-	S-formylglutathione hydrolase
1542	 54.41	0	1604265..1604933	+	222	206578866	folE	KPK_1575	-	GTP cyclohydrolase I
1543	 62.44	0	1604949..1606106	+	385	206575857	-	KPK_1576	-	hypothetical protein
1544	 61.58	0	1606262..1607284	+	340	206576439	galS	KPK_1577	-	transcriptional regulator GalS
1545	 53.75	0	1607581..1608579	+	332	206580424	mglB	KPK_1578	-	galactose ABC transporter, periplasmic galactose-binding protein
1546	 50.76	0	1608698..1610218	+	506	206581052	mglA	KPK_1579	-	galactose ABC transporter, ATP-binding protein
1547	 55.59	0	1610234..1611244	+	336	206578874	mglC	KPK_1580	-	galactose ABC transporter, permease protein
1548	 44.97	-1	1611286..1611732	-	148	206579477	-	KPK_1581	-	DNA-binding protein
1549	 58.74	0	1612948..1613679	-	243	206580837	sanA	KPK_1583	-	protein SanA
1550	 63.73	+1	1613972..1614856	-	294	206579041	cdd	KPK_1584	-	cytidine deaminase
1551	 59.91	0	1614985..1615680	-	231	206577690	-	KPK_1585	-	LrgB family protein
1552	 54.81	0	1615670..1616074	-	134	206575796	-	KPK_1586	-	LrgA family protein
1553	 60.45	0	1616433..1617365	+	310	206577930	dusC	KPK_1587	-	tRNA-dihydrouridine synthase C
1554	 61.25	0	1617722..1619086	+	454	206577315	-	KPK_1588	-	carbohydrate-selective porin, OprB family
1555	 53.24	0	1619242..1620075	+	277	206579423	bglG	KPK_1589	-	cryptic beta-glucoside bgl operon antiterminator
1556	 59.03	0	1620218..1622077	+	619	206578842	bglF	KPK_1590	-	PTS system, beta-glucoside-specific EIIBCA component
1557	 58.78	0	1622093..1623487	+	464	206580957	bglB	KPK_1591	-	6-phospho-beta-glucosidase BglB
1558	 60.68	0	1623521..1624255	-	244	206580196	-	KPK_1592	-	putative methyltransferase
1559	 61.11	0	1624384..1625823	+	479	206580355	-	KPK_1593	-	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
1560	 61.75	0	1625856..1626425	-	189	206579610	-	KPK_1594	-	hypothetical protein
1561	 57.99	0	1626579..1627166	+	195	206576078	-	KPK_1595	-	hypothetical protein
1562	 60.15	0	1627355..1628305	+	316	206580756	pbpG	KPK_1596	-	penicillin-binding protein 7
1563	 61.44	0	1628647..1629201	-	184	206576629	-	KPK_1597	-	putative phosphinothricin N-acetyltransferase
1564	 59.56	0	1629287..1631032	-	581	206576041	dld	KPK_1598	-	D-lactate dehydrogenase
1565	 60.27	0	1631227..1633524	+	765	206577783	bglX	KPK_1599	-	beta-glucosidase, periplasmic
1566	 60.89	0	1633661..1634578	+	305	206577208	-	KPK_1600	-	ABC transporter, quaternary amine uptake transporter (QAT) family, substrate-binding protein
1567	 67.36	+1	1634586..1635743	+	385	206580027	-	KPK_1601	-	ABC transporter, quaternary amine uptake transporter (QAT) family, permease protein
1568	 66.98	+1	1635736..1636683	+	315	206577299	-	KPK_1602	-	ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein
1569	 66.12	+1	1636667..1637404	+	245	206576005	-	KPK_1604	-	ABC transporter, quaternary amine uptake transporter (QAT) family, permease protein
1570	 57.02	0	1637379..1637492	-	37	206580294	-	KPK_1603	-	hypothetical protein
1571	 60.86	0	1637722..1639410	+	562	206576413	-	KPK_1605	-	sensor histidine kinase
1572	 59.72	0	1639404..1640123	+	239	206577018	-	KPK_1606	-	DNA-binding response regulator
1573	 54.99	0	1640171..1640641	+	156	206580689	-	KPK_1607	-	hypothetical protein
1574	 59.14	0	1640752..1642785	-	677	206581116	metG	KPK_1608	-	methionyl-tRNA synthetase
1575	 61.62	0	1642939..1644048	+	369	206579578	-	KPK_1610	-	mrp protein
1576	 64.07	+1	1644045..1644506	-	153	206578859	-	KPK_1609	-	acetyltransferase, GNAT family
1577	 55.03	0	1644481..1644798	-	105	206577293	-	KPK_1611	-	hypothetical protein
1578	 62.78	0	1644982..1645881	+	299	206578506	-	KPK_1613	-	transcriptional regulator, LysR family
1579	 63.02	0	1645871..1647214	-	447	206575951	-	KPK_1612	-	inorganic anion transporter, sulfate permease (SulP) family
1580	 66.17	+1	1647217..1649028	-	603	206580622	-	KPK_1614	-	putative adenine deaminase
1581	 62.94	0	1649152..1650063	+	303	206579656	-	KPK_1616	-	transcriptional regulator, LysR family
1582	 58.39	0	1650060..1650482	-	140	206577545	-	KPK_1615	-	putative universal stress family protein
1583	 54.76	0	1650452..1650577	-	41	206576813	-	KPK_1617	-	hypothetical protein
1584	 69.64	+1	1650799..1651572	+	257	206576198	thiM	KPK_1618	-	hydroxyethylthiazole kinase
1585	 66.92	+1	1651569..1652369	+	266	206580015	thiD	KPK_1619	-	phosphomethylpyrimidine kinase
1586	 59.26	0	1652517..1653569	+	350	206576495	fbaB	KPK_1620	-	fructose-bisphosphate aldolase, class 1
1587	 57.43	0	1653651..1654592	-	313	206580098	dalR	KPK_1621	-	D-arabitol transcriptional repressor DalR
1588	 59.28	0	1654799..1656166	+	455	206577591	dalD	KPK_1622	-	D-arabinitol 4-dehydrogenase
1589	 64.96	+1	1656176..1657639	+	487	206580882	xylB_2	KPK_1623	-	xylulokinase
1590	 57.04	0	1657710..1658987	+	425	206578721	dalT	KPK_1624	-	D-arabinitol transporter
1591	 59.28	0	1659036..1659698	+	220	206576023	-	KPK_1625	-	HAD hydrolase, family IA
1592	 59.13	0	1659996..1661150	+	384	206576511	-	KPK_1626	-	mandelate racemase/muconate lactonizing enzyme family protein
1593	 58.96	0	1661270..1662892	+	540	206577132	-	KPK_1627	-	ABC transporter, periplasmic substrate-binding protein
1594	 59.44	0	1662889..1663926	+	345	206576304	-	KPK_1628	-	ABC transporter, permease protein
1595	 62.03	0	1663923..1664828	+	301	206579051	-	KPK_1629	-	ABC transporter, permease protein
1596	 59.43	0	1664821..1665663	+	280	206579192	-	KPK_1630	-	ABC transporter, ATP-binding protein
1597	 59.17	0	1665674..1666447	+	257	206579887	-	KPK_1631	-	ABC transporter, ATP-binding protein
1598	 60.29	0	1666687..1667580	-	297	206580358	-	KPK_1632	-	diacylglycerol kinase catalytic domain protein
1599	 58.74	0	1667826..1669187	-	453	206581059	-	KPK_1633	-	peptidase, U32 family
1600	 60.58	0	1669506..1670228	-	240	206578805	baeR	KPK_1634	-	transcriptional regulatory protein BaeR
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.