IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1463	 60.59	0	1514735..1515277	+	180	206578968	-	KPK_1495	-	outer membrane protein, YfaZ
1464	 61.90	0	1515380..1516576	+	398	206579774	-	KPK_1496	-	CinA family protein
1465	 57.89	0	1516782..1517567	+	261	206576487	-	KPK_1497	-	transcriptional regulator, IclR family
1466	 59.95	0	1517578..1518783	+	401	206577631	-	KPK_1498	-	mandelate racemase/muconate lactonizing enzyme family protein
1467	 61.78	0	1518826..1520115	+	429	206580717	-	KPK_1499	-	transporter, major facilitator family
1468	 62.19	0	1520130..1520933	+	267	206575736	-	KPK_1500	-	putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
1469	 60.56	0	1520962..1522140	-	392	206577147	glpC	KPK_1501	-	glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
1470	 64.60	+1	1522137..1523396	-	419	206577983	glpB	KPK_1502	-	glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
1471	 64.57	+1	1523386..1525008	-	540	206579472	glpA	KPK_1503	-	glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
1472	 57.02	0	1525280..1526626	+	448	206579014	glpT	KPK_1504	-	glycerol-3-phosphate transporter
1473	 54.25	0	1526636..1527706	+	356	206579482	glpQ	KPK_1505	-	glycerophosphoryl diester phosphodiesterase
1474	 62.59	0	1527715..1527861	+	48	206578888	-	KPK_1506	-	hypothetical protein
1475	 56.47	0	1528168..1528422	-	84	206578008	-	KPK_1507	-	2Fe-2S iron-sulfur cluster-binding protein
1476	 55.70	0	1528422..1529552	-	376	206577425	nrdB	KPK_1508	-	ribonucleoside-diphosphate reductase, beta subunit
1477	 57.52	0	1529654..1531939	-	761	206576450	nrdA	KPK_1509	-	ribonucleoside-diphosphate reductase, alpha subunit
1478	 58.85	0	1532284..1533012	-	242	206575715	ubiG	KPK_1510	-	3-demethylubiquinone-9 3-O-methyltransferase
1479	 57.90	0	1533159..1535792	+	877	206578949	gyrA	KPK_1511	-	DNA gyrase, A subunit
1480	 57.83	0	1535924..1538764	+	946	206580985	rcsC	KPK_1512	-	sensor kinase protein RcsC
1481	 52.38	0	1538810..1539460	-	216	206577298	rcsB	KPK_1513	-	capsular synthesis regulator component B
1482	 56.13	0	1539476..1542133	-	885	206578047	yojN	KPK_1514	-	sensor-like histidine kinase YojN
1483	 36.16	-2	1542420..1542596	-	58	206575749	-	KPK_1515	-	hypothetical protein
1484	 53.11	0	1542905..1543996	+	363	206576484	ompC	KPK_1516	-	outer membrane protein C
1485	 61.73	0	1544100..1545152	+	350	206580361	apbE	KPK_1517	-	thiamine biosynthesis lipoprotein ApbE
1486	 66.85	+1	1545226..1546290	+	354	206581083	ada	KPK_1518	-	regulatory protein Ada
1487	 63.91	+1	1546290..1546943	+	217	206578796	alkB	KPK_1519	-	alkylated DNA repair protein AlkB
1488	 61.86	0	1547018..1548661	+	547	206579539	-	KPK_1520	-	cyclic peptide ABC transporter, permease/ATP-binding protein
1489	 60.54	0	1548817..1550253	+	478	206581088	mgtE	KPK_1522	-	magnesium transporter
1490	 61.99	0	1550216..1551454	-	412	206580277	-	KPK_1521	-	inorganic anion transporter, sulfate permease (SulP) family
1491	 58.53	0	1551735..1553369	+	544	206578514	-	KPK_1523	-	putative malate:quinone-oxidoreductase
1492	 56.50	0	1553434..1553925	-	163	206579749	eco	KPK_1524	-	ecotin
1493	 55.50	0	1554079..1555188	-	369	206578196	-	KPK_1525	-	hypothetical protein
1494	 50.26	-1	1555537..1555725	-	62	206578903	-	KPK_1526	-	hypothetical protein
1495	 50.95	0	1555796..1556005	-	69	206577267	-	KPK_1527	-	hypothetical protein
1496	 28.21	-2	1556175..1556291	-	38	206578064	-	KPK_1528	-	hypothetical protein
1497	 51.96	0	1556339..1557079	+	246	206580740	-	KPK_1529	-	amino acid ABC transporter, ATP-binding protein
1498	 48.07	-1	1557088..1557786	+	232	206575884	-	KPK_1530	-	amino acid ABC transporter, permease protein
1499	 52.99	0	1557796..1558548	+	250	206579704	-	KPK_1531	-	amino acid ABC transporter, permease protein
1500	 50.23	-1	1558505..1559380	+	291	206580311	-	KPK_1532	-	amino acid ABC transporter, periplasmic amino acid-binding protein
1501	 57.04	0	1559385..1559924	+	179	206580615	-	KPK_1533	-	hypothetical protein
1502	 60.20	0	1560119..1560907	+	262	206578703	-	KPK_1534	-	putative pyrroline-5-carboxylate reductase
1503	 58.77	0	1561357..1563117	-	586	206579383	-	KPK_1536	-	sulfatase family protein
1504	 51.89	0	1563136..1563399	-	87	206577280	-	KPK_1537	-	hypothetical protein
1505	 57.84	0	1563550..1564557	+	335	206578207	ndpA	KPK_1538	-	nucleoid-associated protein NdpA
1506	 62.60	0	1564577..1565338	-	253	206576320	-	KPK_1539	-	transcriptional regulator, DeoR family
1507	 58.79	0	1565420..1566016	+	198	206576898	yffH	KPK_1540	-	hydrolase YffH
1508	 60.45	0	1566037..1567323	-	428	206579122	-	KPK_1541	-	beta-lactamase
1509	 59.46	0	1567427..1568314	+	295	206579670	-	KPK_1542	-	transcriptional regulator, LysR family
1510	 51.23	0	1568373..1568657	-	94	206577853	-	KPK_1543	-	ribosomal L25p family
1511	 60.69	0	1568794..1570551	-	585	206575882	-	KPK_1544	-	putative helicase
1512	 59.44	0	1570698..1571417	+	239	206576604	rsuA	KPK_1545	-	ribosomal small subunit pseudouridine synthase A
1513	 59.06	0	1571414..1572610	+	398	206580663	bcr	KPK_1546	-	bicyclomycin resistance protein
1514	 56.23	0	1572941..1573285	+	114	206578739	-	KPK_1547	-	hypothetical protein
1515	 62.58	0	1573289..1574878	-	529	206579480	-	KPK_1548	-	ABC transporter, ATP-binding protein
1516	 61.50	0	1574880..1575905	-	341	206577563	-	KPK_1549	-	ABC transporter, permease protein
1517	 57.72	0	1575905..1576999	-	364	206576271	-	KPK_1550	-	ABC transporter, permease protein
1518	 58.80	0	1577009..1578814	-	601	206575776	-	KPK_1551	-	ABC transporter, periplasmic substrate-binding protein
1519	 55.73	0	1578883..1580445	-	520	206576538	-	KPK_1552	-	putative cyclic diguanylate phosphodiesterase
1520	 55.09	0	1580634..1581203	-	189	206576583	spr	KPK_1553	-	lipoprotein Spr
1521	 43.86	-1	1581517..1581630	-	37	206579591	-	KPK_1554	-	hypothetical protein
1522	 58.47	0	1581630..1582337	-	235	206578818	-	KPK_1555	-	PAP2 family protein
1523	 62.07	0	1582381..1583358	-	325	206581106	-	KPK_1556	-	CobW/P47K family protein
1524	 62.64	0	1583479..1584945	-	488	206580348	-	KPK_1557	-	mannitol dehydrogenase family protein
1525	 58.10	0	1585153..1586343	+	396	206575869	uxuA	KPK_1558	-	mannonate dehydratase
1526	 52.36	0	1586984..1587556	-	190	206580520	yeiP	KPK_1559	-	elongation factor P-like protein YeiP
1527	 61.57	0	1587704..1587958	+	84	206578136	-	KPK_1560	-	hypothetical protein
1528	 58.09	0	1587961..1588893	-	310	206576635	-	KPK_1561	-	transcriptional regulator, LysR family
1529	 38.46	-2	1589024..1589140	+	38	206579583	-	KPK_1562	-	hypothetical protein
1530	 47.54	-1	1589107..1589451	+	114	206578484	-	KPK_1563	-	hypothetical protein
1531	 56.55	0	1589453..1590589	+	378	206580782	-	KPK_1564	-	auxiliary transport protein, membrane fusion protein (MFP) family
1532	 60.58	0	1590624..1591805	-	393	206579909	setB	KPK_1565	-	sugar efflux transporter B
1533	 63.13	0	1592140..1593270	+	376	206578123	fruB	KPK_1566	-	PTS system fructose-specific phosphotransferase enzyme IIA component
1534	 61.02	0	1593271..1594209	+	312	206577537	fruK	KPK_1567	-	1-phosphofructokinase
1535	 62.65	0	1594226..1595920	+	564	206579377	fruA	KPK_1568	-	PTS system fructose-specific EIIBC component
1536	 61.05	0	1595973..1596827	-	284	206578779	nfo	KPK_1569	-	endonuclease 4
1537	 60.86	0	1596899..1597948	-	349	206578486	-	KPK_1570	-	hypothetical protein
1538	 61.01	0	1598214..1599080	+	288	206580583	-	KPK_1571	-	transcriptional regulator, LysR family
1539	 58.03	0	1599258..1600727	+	489	206576906	lysP	KPK_1572	-	lysine-specific permease
1540	 58.92	0	1601027..1603000	+	657	206576322	cirA	KPK_1573	-	colicin I receptor
1541	 61.39	0	1603071..1603904	-	277	206577411	fghA	KPK_1574	-	S-formylglutathione hydrolase
1542	 54.41	0	1604265..1604933	+	222	206578866	folE	KPK_1575	-	GTP cyclohydrolase I
1543	 62.44	0	1604949..1606106	+	385	206575857	-	KPK_1576	-	hypothetical protein
1544	 61.58	0	1606262..1607284	+	340	206576439	galS	KPK_1577	-	transcriptional regulator GalS
1545	 53.75	0	1607581..1608579	+	332	206580424	mglB	KPK_1578	-	galactose ABC transporter, periplasmic galactose-binding protein
1546	 50.76	0	1608698..1610218	+	506	206581052	mglA	KPK_1579	-	galactose ABC transporter, ATP-binding protein
1547	 55.59	0	1610234..1611244	+	336	206578874	mglC	KPK_1580	-	galactose ABC transporter, permease protein
1548	 44.97	-1	1611286..1611732	-	148	206579477	-	KPK_1581	-	DNA-binding protein
1549	 58.74	0	1612948..1613679	-	243	206580837	sanA	KPK_1583	-	protein SanA
1550	 63.73	+1	1613972..1614856	-	294	206579041	cdd	KPK_1584	-	cytidine deaminase
1551	 59.91	0	1614985..1615680	-	231	206577690	-	KPK_1585	-	LrgB family protein
1552	 54.81	0	1615670..1616074	-	134	206575796	-	KPK_1586	-	LrgA family protein
1553	 60.45	0	1616433..1617365	+	310	206577930	dusC	KPK_1587	-	tRNA-dihydrouridine synthase C
1554	 61.25	0	1617722..1619086	+	454	206577315	-	KPK_1588	-	carbohydrate-selective porin, OprB family
1555	 53.24	0	1619242..1620075	+	277	206579423	bglG	KPK_1589	-	cryptic beta-glucoside bgl operon antiterminator
1556	 59.03	0	1620218..1622077	+	619	206578842	bglF	KPK_1590	-	PTS system, beta-glucoside-specific EIIBCA component
1557	 58.78	0	1622093..1623487	+	464	206580957	bglB	KPK_1591	-	6-phospho-beta-glucosidase BglB
1558	 60.68	0	1623521..1624255	-	244	206580196	-	KPK_1592	-	putative methyltransferase
1559	 61.11	0	1624384..1625823	+	479	206580355	-	KPK_1593	-	efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
1560	 61.75	0	1625856..1626425	-	189	206579610	-	KPK_1594	-	hypothetical protein
1561	 57.99	0	1626579..1627166	+	195	206576078	-	KPK_1595	-	hypothetical protein
1562	 60.15	0	1627355..1628305	+	316	206580756	pbpG	KPK_1596	-	penicillin-binding protein 7
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.