IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1417	 53.42	0	1470852..1471568	+	238	206578110	hisM	KPK_1449	-	histidine ABC transporter, permease protein HisM
1418	 56.20	0	1471576..1472349	+	257	206578402	hisP	KPK_1450	-	histidine ABC transporter, ATP-binding protein
1419	 59.28	0	1472355..1472882	-	175	206577629	-	KPK_1451	-	acetyltransferase, GNAT family
1420	 58.73	0	1472996..1473121	+	41	206578552	-	KPK_1453	-	hypothetical protein
1421	 60.74	0	1473101..1473994	-	297	206579241	-	KPK_1452	-	NAD dependent epimerase/dehydratase family protein
1422	 49.59	-1	1474013..1474375	-	120	206579494	folX	KPK_1454	-	D-erythro-7,8-dihydroneopterin triphosphate epimerase
1423	 56.03	0	1474441..1475070	-	209	206578895	-	KPK_1455	-	putative glutathione S-transferase
1424	 59.53	0	1475261..1475905	+	214	206577273	-	KPK_1456	-	glutathione S-transferase domain protein
1425	 55.98	0	1475962..1476513	+	183	206576642	-	KPK_1457	-	phosphodiesterase, YfcE family
1426	 56.78	0	1476571..1477116	+	181	206576362	yfcD	KPK_1458	-	hydrolase YfcD
1427	 60.10	0	1477207..1479354	-	715	206580523	pta	KPK_1459	-	phosphate acetyltransferase
1428	 55.53	0	1479555..1480757	-	400	206580316	ackA	KPK_1460	-	acetate kinase
1429	 39.68	-2	1480783..1480908	-	41	206579732	-	KPK_1461	-	hypothetical protein
1430	 58.11	0	1481096..1481551	+	151	206578134	-	KPK_1462	-	putative inner membrane protein YfbV
1431	 53.13	0	1481639..1482133	+	164	206579007	-	KPK_1463	-	YfbU domain protein
1432	 60.00	0	1482145..1482804	+	219	206579759	yfbT	KPK_1464	-	sugar-phosphatase, YfbT
1433	 58.81	0	1482881..1484713	+	610	206580240	-	KPK_1465	-	transporter, divalent anion:Na+ symporter (DASS) family
1434	 54.17	0	1484759..1485358	-	199	206580959	yfbR	KPK_1466	-	5'-nucleotidase
1435	 56.24	0	1485440..1486657	-	405	206579023	-	KPK_1467	-	aminotransferase, classes I and II
1436	 45.00	-1	1487198..1487317	+	39	206579781	-	KPK_1468	-	hypothetical protein
1437	 59.55	0	1487534..1488460	+	308	206577249	lrhA	KPK_1469	-	transcriptional regulator LrhA
1438	 42.18	-2	1488577..1488723	+	48	206577894	-	KPK_1470	-	hypothetical protein
1439	 54.88	0	1489115..1489555	+	146	206575889	nuoA	KPK_1471	-	NADH-quinone oxidoreductase, A subunit
1440	 56.30	0	1489571..1490245	+	224	206576675	nuoB	KPK_1472	-	NADH-quinone oxidoreductase, B subunit
1441	 58.54	0	1490333..1492141	+	602	206578814	nuoC	KPK_1473	-	NADH-quinone oxidoreductase, C/D subunit
1442	 56.89	0	1492144..1492644	+	166	206579544	nuoE	KPK_1474	-	NADH-quinone oxidoreductase, E subunit
1443	 60.31	0	1492641..1493978	+	445	206579298	nuoF	KPK_1475	-	NADH-quinone oxidoreductase, F subunit
1444	 61.61	0	1494010..1496736	+	908	206577381	nuoG	KPK_1476	-	NADH-quinone oxidoreductase, G subunit
1445	 57.26	0	1496733..1497710	+	325	206577886	nuoH	KPK_1477	-	NADH-quinone oxidoreductase, H subunit
1446	 56.35	0	1497725..1498267	+	180	206576263	nuoI	KPK_1478	-	NADH-quinone oxidoreductase, I subunit
1447	 58.38	0	1498278..1498832	+	184	206577065	nuoJ	KPK_1479	-	NADH-quinone oxidoreductase, J subunit
1448	 56.77	0	1498829..1499131	+	100	206580383	nuoK	KPK_1480	-	NADH-quinone oxidoreductase, K subunit
1449	 59.12	0	1499128..1500969	+	613	206580971	nuoL	KPK_1481	-	NADH-quinone oxidoreductase, L subunit
1450	 57.78	0	1501271..1502800	+	509	206580685	nuoM	KPK_1482	-	NADH-quinone oxidoreductase, M subunit
1451	 60.49	0	1502807..1504264	+	485	206579588	nuoN	KPK_1483	-	NADH-quinone oxidoreductase, N subunit
1452	 60.48	0	1504318..1505238	-	306	206578868	rnz	KPK_1484	-	ribonuclease Z
1453	 59.09	0	1505296..1505757	+	153	206581002	-	KPK_1485	-	acetyltransferase, GNAT family
1454	 63.49	0	1505893..1507182	+	429	206580380	menF	KPK_1486	-	isochorismate synthase, menaquinone-specific
1455	 65.35	+1	1507265..1508935	+	556	206579611	menD	KPK_1487	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
1456	 63.64	+1	1508932..1509690	+	252	206578855	-	KPK_1488	-	hydrolase, alpha/beta fold family
1457	 59.32	0	1509705..1510562	+	285	206577427	menB	KPK_1489	-	naphthoate synthase
1458	 63.87	+1	1510562..1511527	+	321	206576470	menC	KPK_1490	-	o-succinylbenzoic acid (OSB) synthetase
1459	 63.25	0	1511527..1512900	+	457	206575747	menE	KPK_1491	-	o-succinylbenzoate-CoA ligase
1460	 55.16	0	1512956..1513381	-	141	206580542	nudI	KPK_1492	-	pyrimidine deoxynucleoside triphosphate pyrophosphohydrolase
1461	 58.33	0	1513519..1514454	+	311	206580139	-	KPK_1493	-	hypothetical protein
1462	 42.28	-2	1514532..1514654	-	40	206580910	-	KPK_1494	-	hypothetical protein
1463	 60.59	0	1514735..1515277	+	180	206578968	-	KPK_1495	-	outer membrane protein, YfaZ
1464	 61.90	0	1515380..1516576	+	398	206579774	-	KPK_1496	-	CinA family protein
1465	 57.89	0	1516782..1517567	+	261	206576487	-	KPK_1497	-	transcriptional regulator, IclR family
1466	 59.95	0	1517578..1518783	+	401	206577631	-	KPK_1498	-	mandelate racemase/muconate lactonizing enzyme family protein
1467	 61.78	0	1518826..1520115	+	429	206580717	-	KPK_1499	-	transporter, major facilitator family
1468	 62.19	0	1520130..1520933	+	267	206575736	-	KPK_1500	-	putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
1469	 60.56	0	1520962..1522140	-	392	206577147	glpC	KPK_1501	-	glycerol-3-phosphate dehydrogenase, anaerobic, C subunit
1470	 64.60	+1	1522137..1523396	-	419	206577983	glpB	KPK_1502	-	glycerol-3-phosphate dehydrogenase, anaerobic, B subunit
1471	 64.57	+1	1523386..1525008	-	540	206579472	glpA	KPK_1503	-	glycerol-3-phosphate dehydrogenase, anaerobic, A subunit
1472	 57.02	0	1525280..1526626	+	448	206579014	glpT	KPK_1504	-	glycerol-3-phosphate transporter
1473	 54.25	0	1526636..1527706	+	356	206579482	glpQ	KPK_1505	-	glycerophosphoryl diester phosphodiesterase
1474	 62.59	0	1527715..1527861	+	48	206578888	-	KPK_1506	-	hypothetical protein
1475	 56.47	0	1528168..1528422	-	84	206578008	-	KPK_1507	-	2Fe-2S iron-sulfur cluster-binding protein
1476	 55.70	0	1528422..1529552	-	376	206577425	nrdB	KPK_1508	-	ribonucleoside-diphosphate reductase, beta subunit
1477	 57.52	0	1529654..1531939	-	761	206576450	nrdA	KPK_1509	-	ribonucleoside-diphosphate reductase, alpha subunit
1478	 58.85	0	1532284..1533012	-	242	206575715	ubiG	KPK_1510	-	3-demethylubiquinone-9 3-O-methyltransferase
1479	 57.90	0	1533159..1535792	+	877	206578949	gyrA	KPK_1511	-	DNA gyrase, A subunit
1480	 57.83	0	1535924..1538764	+	946	206580985	rcsC	KPK_1512	-	sensor kinase protein RcsC
1481	 52.38	0	1538810..1539460	-	216	206577298	rcsB	KPK_1513	-	capsular synthesis regulator component B
1482	 56.13	0	1539476..1542133	-	885	206578047	yojN	KPK_1514	-	sensor-like histidine kinase YojN
1483	 36.16	-2	1542420..1542596	-	58	206575749	-	KPK_1515	-	hypothetical protein
1484	 53.11	0	1542905..1543996	+	363	206576484	ompC	KPK_1516	-	outer membrane protein C
1485	 61.73	0	1544100..1545152	+	350	206580361	apbE	KPK_1517	-	thiamine biosynthesis lipoprotein ApbE
1486	 66.85	+1	1545226..1546290	+	354	206581083	ada	KPK_1518	-	regulatory protein Ada
1487	 63.91	+1	1546290..1546943	+	217	206578796	alkB	KPK_1519	-	alkylated DNA repair protein AlkB
1488	 61.86	0	1547018..1548661	+	547	206579539	-	KPK_1520	-	cyclic peptide ABC transporter, permease/ATP-binding protein
1489	 60.54	0	1548817..1550253	+	478	206581088	mgtE	KPK_1522	-	magnesium transporter
1490	 61.99	0	1550216..1551454	-	412	206580277	-	KPK_1521	-	inorganic anion transporter, sulfate permease (SulP) family
1491	 58.53	0	1551735..1553369	+	544	206578514	-	KPK_1523	-	putative malate:quinone-oxidoreductase
1492	 56.50	0	1553434..1553925	-	163	206579749	eco	KPK_1524	-	ecotin
1493	 55.50	0	1554079..1555188	-	369	206578196	-	KPK_1525	-	hypothetical protein
1494	 50.26	-1	1555537..1555725	-	62	206578903	-	KPK_1526	-	hypothetical protein
1495	 50.95	0	1555796..1556005	-	69	206577267	-	KPK_1527	-	hypothetical protein
1496	 28.21	-2	1556175..1556291	-	38	206578064	-	KPK_1528	-	hypothetical protein
1497	 51.96	0	1556339..1557079	+	246	206580740	-	KPK_1529	-	amino acid ABC transporter, ATP-binding protein
1498	 48.07	-1	1557088..1557786	+	232	206575884	-	KPK_1530	-	amino acid ABC transporter, permease protein
1499	 52.99	0	1557796..1558548	+	250	206579704	-	KPK_1531	-	amino acid ABC transporter, permease protein
1500	 50.23	-1	1558505..1559380	+	291	206580311	-	KPK_1532	-	amino acid ABC transporter, periplasmic amino acid-binding protein
1501	 57.04	0	1559385..1559924	+	179	206580615	-	KPK_1533	-	hypothetical protein
1502	 60.20	0	1560119..1560907	+	262	206578703	-	KPK_1534	-	putative pyrroline-5-carboxylate reductase
1503	 58.77	0	1561357..1563117	-	586	206579383	-	KPK_1536	-	sulfatase family protein
1504	 51.89	0	1563136..1563399	-	87	206577280	-	KPK_1537	-	hypothetical protein
1505	 57.84	0	1563550..1564557	+	335	206578207	ndpA	KPK_1538	-	nucleoid-associated protein NdpA
1506	 62.60	0	1564577..1565338	-	253	206576320	-	KPK_1539	-	transcriptional regulator, DeoR family
1507	 58.79	0	1565420..1566016	+	198	206576898	yffH	KPK_1540	-	hydrolase YffH
1508	 60.45	0	1566037..1567323	-	428	206579122	-	KPK_1541	-	beta-lactamase
1509	 59.46	0	1567427..1568314	+	295	206579670	-	KPK_1542	-	transcriptional regulator, LysR family
1510	 51.23	0	1568373..1568657	-	94	206577853	-	KPK_1543	-	ribosomal L25p family
1511	 60.69	0	1568794..1570551	-	585	206575882	-	KPK_1544	-	putative helicase
1512	 59.44	0	1570698..1571417	+	239	206576604	rsuA	KPK_1545	-	ribosomal small subunit pseudouridine synthase A
1513	 59.06	0	1571414..1572610	+	398	206580663	bcr	KPK_1546	-	bicyclomycin resistance protein
1514	 56.23	0	1572941..1573285	+	114	206578739	-	KPK_1547	-	hypothetical protein
1515	 62.58	0	1573289..1574878	-	529	206579480	-	KPK_1548	-	ABC transporter, ATP-binding protein
1516	 61.50	0	1574880..1575905	-	341	206577563	-	KPK_1549	-	ABC transporter, permease protein
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.