IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1353	 56.17	0	1403355..1404116	-	253	206579008	cysZ	KPK_1378	-	CysZ protein
1354	 41.67	-2	1404153..1404296	+	47	206580007	-	KPK_1379	-	hypothetical protein
1355	 61.03	0	1404347..1405411	+	354	206576531	zipA	KPK_1380	-	cell division protein ZipA
1356	 60.07	0	1405481..1407496	+	671	206579402	ligA	KPK_1381	-	DNA ligase, NAD-dependent
1357	 52.05	0	1407498..1407716	+	72	206578006	-	KPK_1383	-	hypothetical protein
1358	 57.66	0	1407713..1408711	-	332	206578656	-	KPK_1382	-	transporter, bile acid/Na+ symporter family
1359	 59.98	0	1408800..1409726	+	308	206577390	-	KPK_1384	-	transcriptional regulator, LysR family
1360	 56.17	0	1410701..1412119	+	472	206577261	gltX	KPK_1389	-	glutamyl-tRNA synthetase
1361	 58.78	0	1412172..1412564	-	130	206576963	-	KPK_1390	-	hypothetical protein
1362	 57.91	0	1412568..1412921	-	117	206575852	-	KPK_1391	-	hypothetical protein
1363	 51.06	0	1413543..1415714	+	723	206575849	-	KPK_1394	-	diguanylate cyclase/cyclic diguanylate phosphodiesterase
1364	 53.45	0	1415763..1416965	-	400	206578011	nupC	KPK_1395	-	nucleoside transporter NupC
1365	 59.58	0	1417312..1418553	+	413	206580979	mntH	KPK_1396	-	manganese transport protein MntH
1366	 59.60	0	1418611..1418964	-	117	206576452	-	KPK_1397	-	hypothetical protein
1367	 58.91	0	1419095..1420087	-	330	206579498	-	KPK_1398	-	oxidoreductase, aldo/keto reductase family
1368	 62.33	0	1420268..1421929	+	553	206579495	ipdC	KPK_1400	-	indole-3-pyruvate decarboxylase
1369	 65.05	+1	1421926..1423161	-	411	206578843	-	KPK_1399	-	chloride transporter, chloride channel (ClC) family
1370	 59.73	0	1423425..1424390	+	321	206578908	glk	KPK_1401	-	glucokinase
1371	 50.46	0	1424443..1425195	-	250	206577967	-	KPK_1402	-	DNA-binding response regulator
1372	 55.42	0	1425192..1426889	-	565	206577150	-	KPK_1403	-	sensor histidine kinase
1373	 57.61	0	1427272..1428486	+	404	206579903	-	KPK_1404	-	aminotransferase, classes I and II
1374	 65.91	+1	1428966..1430162	-	398	206579368	cynX	KPK_1405	-	cyanate transporter
1375	 59.69	0	1430159..1430617	-	152	206578758	-	KPK_1406	-	cytidine/deoxycytidylate deaminase family protein
1376	 62.10	0	1430750..1431691	+	313	206577588	cynR	KPK_1408	-	transcriptional regulator cynR
1377	 46.03	-1	1431688..1432656	-	322	206578213	-	KPK_1407	-	hypothetical protein
1378	 57.97	0	1432927..1433409	-	160	206576977	-	KPK_1409	-	hypothetical protein
1379	 55.05	0	1433823..1434752	-	309	206576375	-	KPK_1411	-	hypothetical protein
1380	 56.69	0	1435042..1435803	+	253	206580527	-	KPK_1412	-	lipoprotein, VacJ family
1381	 57.86	0	1435864..1437192	-	442	206579930	fadL	KPK_1413	-	long-chain fatty acid transport protein
1382	 52.63	0	1437560..1437844	+	94	206579338	-	KPK_1414	-	hypothetical protein
1383	 61.33	0	1438002..1439312	+	436	206579726	fadI	KPK_1415	-	acetyl-CoA C-acyltransferase FadI
1384	 59.21	0	1439312..1441456	+	714	206576247	fadJ	KPK_1416	-	fatty oxidation complex, alpha subunit FadJ
1385	 58.23	0	1441666..1442151	+	161	206575814	sixA	KPK_1417	-	phosphohistidine phosphatase SixA
1386	 55.80	0	1442170..1442721	-	183	206577812	-	KPK_1418	-	Smr domain protein
1387	 57.56	0	1442889..1443821	+	310	206577308	prmB	KPK_1419	-	ribosomal large subunit L3 protein glutamine methyltransferase
1388	 59.76	0	1443864..1444949	+	361	206576459	aroC	KPK_1420	-	chorismate synthase
1389	 62.67	0	1444952..1445776	+	274	206575806	mepA	KPK_1421	-	penicillin-insensitive murein endopeptidase
1390	 58.27	0	1445776..1446585	+	269	206578099	-	KPK_1422	-	hypothetical protein
1391	 55.19	0	1446585..1447133	+	182	206577496	-	KPK_1423	-	hypothetical protein
1392	 56.38	0	1447165..1447446	+	93	206579557	-	KPK_1424	-	hypothetical protein
1393	 61.94	0	1447508..1449496	-	662	206578237	mnmC	KPK_1425	-	tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC
1394	 59.38	0	1449655..1450875	+	406	206577113	fabB	KPK_1426	-	3-oxoacyl-[acyl-carrier-protein] synthase 1
1395	 63.96	+1	1451085..1452266	+	393	206576490	-	KPK_1427	-	transporter, major facilitator family
1396	 45.66	-1	1452268..1453005	-	245	206575907	-	KPK_1428	-	transcriptional regulator, GntR family
1397	 42.22	-2	1453201..1453515	+	104	206580725	-	KPK_1429	-	PTS system, lactose/cellobiose specific IIB subunit
1398	 53.44	0	1453633..1454970	+	445	206580889	-	KPK_1430	-	PTS system, lactose/cellobiose family IIC component
1399	 57.05	0	1454957..1455268	+	103	206580215	-	KPK_1431	-	PTS system, lactose/cellobiose specific IIA subunit
1400	 51.25	0	1455329..1457002	+	557	206576317	-	KPK_1432	-	porin, LamB family
1401	 63.61	0	1457061..1458041	-	326	206576905	-	KPK_1433	-	div protein
1402	 59.45	0	1458152..1459288	+	378	206580321	pdxB	KPK_1434	-	erythronate-4-phosphate dehydrogenase
1403	 60.65	0	1459352..1460365	+	337	206579908	-	KPK_1435	-	aspartate-semialdehyde dehydrogenase family protein
1404	 58.18	0	1460365..1461177	+	270	206580474	truA	KPK_1436	-	tRNA pseudouridine synthase A
1405	 54.70	0	1461204..1461863	+	219	206578743	-	KPK_1437	-	membrane protein, DedA family
1406	 59.61	0	1462050..1462970	+	306	206579365	accD	KPK_1438	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
1407	 62.96	0	1463046..1464314	+	422	206579830	folC	KPK_1439	-	tetrahydrofolate synthase/dihydrofolate synthase
1408	 63.33	0	1464304..1465023	+	239	206580592	-	KPK_1440	-	sporulation and cell division repeat protein
1409	 51.53	0	1465240..1465728	+	162	206578909	cvpA	KPK_1441	-	CvpA protein
1410	 55.93	0	1465762..1467279	+	505	206579433	purF	KPK_1442	-	amidophosphoribosyltransferase
1411	 57.26	0	1467415..1467999	+	194	206577725	ubiX	KPK_1443	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
1412	 46.30	-1	1468065..1468226	-	53	206579087	-	KPK_1444	-	hypothetical protein
1413	 55.04	0	1468272..1469054	+	260	206580482	argT	KPK_1445	-	lysine-arginine-ornithine-binding periplasmic protein
1414	 41.27	-2	1469103..1469228	-	41	206580072	-	KPK_1446	-	hypothetical protein
1415	 51.98	0	1469322..1470104	+	260	206576547	hisJ	KPK_1447	-	histidine ABC transporter, periplasmic histidine-binding protein
1416	 58.08	0	1470169..1470855	+	228	206576837	hisQ	KPK_1448	-	histidine ABC transporter, permease protein HisQ
1417	 53.42	0	1470852..1471568	+	238	206578110	hisM	KPK_1449	-	histidine ABC transporter, permease protein HisM
1418	 56.20	0	1471576..1472349	+	257	206578402	hisP	KPK_1450	-	histidine ABC transporter, ATP-binding protein
1419	 59.28	0	1472355..1472882	-	175	206577629	-	KPK_1451	-	acetyltransferase, GNAT family
1420	 58.73	0	1472996..1473121	+	41	206578552	-	KPK_1453	-	hypothetical protein
1421	 60.74	0	1473101..1473994	-	297	206579241	-	KPK_1452	-	NAD dependent epimerase/dehydratase family protein
1422	 49.59	-1	1474013..1474375	-	120	206579494	folX	KPK_1454	-	D-erythro-7,8-dihydroneopterin triphosphate epimerase
1423	 56.03	0	1474441..1475070	-	209	206578895	-	KPK_1455	-	putative glutathione S-transferase
1424	 59.53	0	1475261..1475905	+	214	206577273	-	KPK_1456	-	glutathione S-transferase domain protein
1425	 55.98	0	1475962..1476513	+	183	206576642	-	KPK_1457	-	phosphodiesterase, YfcE family
1426	 56.78	0	1476571..1477116	+	181	206576362	yfcD	KPK_1458	-	hydrolase YfcD
1427	 60.10	0	1477207..1479354	-	715	206580523	pta	KPK_1459	-	phosphate acetyltransferase
1428	 55.53	0	1479555..1480757	-	400	206580316	ackA	KPK_1460	-	acetate kinase
1429	 39.68	-2	1480783..1480908	-	41	206579732	-	KPK_1461	-	hypothetical protein
1430	 58.11	0	1481096..1481551	+	151	206578134	-	KPK_1462	-	putative inner membrane protein YfbV
1431	 53.13	0	1481639..1482133	+	164	206579007	-	KPK_1463	-	YfbU domain protein
1432	 60.00	0	1482145..1482804	+	219	206579759	yfbT	KPK_1464	-	sugar-phosphatase, YfbT
1433	 58.81	0	1482881..1484713	+	610	206580240	-	KPK_1465	-	transporter, divalent anion:Na+ symporter (DASS) family
1434	 54.17	0	1484759..1485358	-	199	206580959	yfbR	KPK_1466	-	5'-nucleotidase
1435	 56.24	0	1485440..1486657	-	405	206579023	-	KPK_1467	-	aminotransferase, classes I and II
1436	 45.00	-1	1487198..1487317	+	39	206579781	-	KPK_1468	-	hypothetical protein
1437	 59.55	0	1487534..1488460	+	308	206577249	lrhA	KPK_1469	-	transcriptional regulator LrhA
1438	 42.18	-2	1488577..1488723	+	48	206577894	-	KPK_1470	-	hypothetical protein
1439	 54.88	0	1489115..1489555	+	146	206575889	nuoA	KPK_1471	-	NADH-quinone oxidoreductase, A subunit
1440	 56.30	0	1489571..1490245	+	224	206576675	nuoB	KPK_1472	-	NADH-quinone oxidoreductase, B subunit
1441	 58.54	0	1490333..1492141	+	602	206578814	nuoC	KPK_1473	-	NADH-quinone oxidoreductase, C/D subunit
1442	 56.89	0	1492144..1492644	+	166	206579544	nuoE	KPK_1474	-	NADH-quinone oxidoreductase, E subunit
1443	 60.31	0	1492641..1493978	+	445	206579298	nuoF	KPK_1475	-	NADH-quinone oxidoreductase, F subunit
1444	 61.61	0	1494010..1496736	+	908	206577381	nuoG	KPK_1476	-	NADH-quinone oxidoreductase, G subunit
1445	 57.26	0	1496733..1497710	+	325	206577886	nuoH	KPK_1477	-	NADH-quinone oxidoreductase, H subunit
1446	 56.35	0	1497725..1498267	+	180	206576263	nuoI	KPK_1478	-	NADH-quinone oxidoreductase, I subunit
1447	 58.38	0	1498278..1498832	+	184	206577065	nuoJ	KPK_1479	-	NADH-quinone oxidoreductase, J subunit
1448	 56.77	0	1498829..1499131	+	100	206580383	nuoK	KPK_1480	-	NADH-quinone oxidoreductase, K subunit
1449	 59.12	0	1499128..1500969	+	613	206580971	nuoL	KPK_1481	-	NADH-quinone oxidoreductase, L subunit
1450	 57.78	0	1501271..1502800	+	509	206580685	nuoM	KPK_1482	-	NADH-quinone oxidoreductase, M subunit
1451	 60.49	0	1502807..1504264	+	485	206579588	nuoN	KPK_1483	-	NADH-quinone oxidoreductase, N subunit
1452	 60.48	0	1504318..1505238	-	306	206578868	rnz	KPK_1484	-	ribonuclease Z
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.