IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae 342



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.01 STD DEV: 6.61
Klebsiella pneumoniae 342, complete genome - 1..5641239
5425 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1069	 54.17	0	1106503..1106862	-	119	206576897	gutM	KPK_1085	-	glucitol operon activator protein
1070	 58.72	0	1106987..1107766	-	259	206577314	srlD	KPK_1086	-	sorbitol-6-phosphate 2-dehydrogenase
1071	 63.64	+1	1107779..1108141	-	120	206579615	srlB	KPK_1087	-	glucitol/sorbitol-specific phosphotransferase enzyme IIA component
1072	 63.17	0	1108155..1109126	-	323	206580194	srlE	KPK_1088	-	glucitol/sorbitol-specific phosphotransferase enzyme IIB component
1073	 56.03	0	1109123..1109686	-	187	206581128	srlA	KPK_1089	-	glucitol/sorbitol permease IIC component
1074	 61.02	0	1109963..1111042	+	359	206575781	mltB	KPK_1090	-	lytic murein transglycosylase B
1075	 66.67	+1	1111521..1111661	-	46	206576545	-	KPK_1091	-	hypothetical protein
1076	 64.42	+1	1111833..1112543	+	236	206577262	-	KPK_1092	-	cation ABC transporter, ATP-binding protein
1077	 63.89	+1	1112540..1113403	+	287	206578051	-	KPK_1093	-	cation ABC transporter, permease protein
1078	 59.39	0	1113411..1114289	+	292	206580897	-	KPK_1094	-	cation ABC transporter, periplasmic cation-binding protein
1079	 63.25	0	1114428..1114925	+	165	206580644	-	KPK_1095	-	competence/damage-inducible protein CinA domain protein
1080	 57.41	0	1115016..1116074	+	352	206577023	recA	KPK_1096	-	protein RecA
1081	 58.08	0	1116145..1116645	+	166	206576524	recX	KPK_1097	-	regulatory protein RecX
1082	 59.25	0	1116897..1119524	+	875	206578751	alaS	KPK_1098	-	alanyl-tRNA synthetase
1083	 47.31	-1	1119889..1120074	+	61	206580667	csrA	KPK_1099	-	carbon storage regulator
1084	 53.02	0	1121661..1121975	+	104	206578251	-	KPK_1105	-	phospholipid-binding domain protein
1085	 60.67	0	1122100..1122666	+	188	206578632	-	KPK_1106	-	HAD-superfamily hydrolase, subfamily IA
1086	 56.64	0	1122663..1123091	+	142	206578306	-	KPK_1107	-	hypothetical protein
1087	 57.87	0	1123158..1124714	+	518	206577765	gshA	KPK_1108	-	glutamate--cysteine ligase
1088	 55.81	0	1124878..1125393	+	171	206581023	luxS	KPK_1109	-	S-Ribosylhomocysteinase (LuxS)
1089	 64.71	+1	1125446..1126213	+	255	206579570	-	KPK_1111	-	putative transcriptional regulator, AraC family
1090	 62.61	0	1126192..1127868	-	558	206580143	leuA_2	KPK_1110	-	2-isopropylmalate synthase
1091	 59.91	0	1128005..1129543	-	512	206579624	emrB	KPK_1112	-	multidrug resistance protein B
1092	 60.53	0	1129559..1130731	-	390	206578040	emrA	KPK_1113	-	multidrug resistance protein A
1093	 52.35	0	1130857..1131387	-	176	206577422	mprA	KPK_1114	-	transcriptional repressor MprA
1094	 63.69	+1	1131478..1131813	-	111	206576430	-	KPK_1115	-	hypothetical protein
1095	 62.52	0	1131803..1132549	-	248	206575878	-	KPK_1116	-	AzlC family protein
1096	 57.96	0	1132733..1133731	-	332	206581107	proX	KPK_1117	-	glycine betaine/L-proline ABC transporter, periplasmic glycine betaine-binding protein
1097	 64.98	+1	1133810..1134877	-	355	206580359	proW	KPK_1118	-	glycine betaine/L-proline ABC transporter, permease protein
1098	 55.03	0	1134870..1136072	-	400	206577815	proV	KPK_1119	-	glycine betaine/L-proline ABC transporter, ATP-binding protein
1099	 55.76	0	1136430..1137392	-	320	206577235	nrdF	KPK_1120	-	ribonucleoside-diphosphate reductase, beta subunit
1100	 60.46	0	1137403..1139544	-	713	206576590	nrdE	KPK_1121	-	ribonucleoside-diphosphate reductase, alpha subunit
1101	 59.12	0	1139517..1139927	-	136	206578660	nrdI	KPK_1122	-	nrdI protein
1102	 61.79	0	1139924..1140169	-	81	206580600	nrdH	KPK_1123	-	glutaredoxin
1103	 60.19	0	1140353..1140784	-	143	206579831	-	KPK_1124	-	carboxymuconolactone decarboxylase family protein
1104	 65.05	+1	1140873..1142234	+	453	206576971	-	KPK_1125	-	transcriptional regulator, GntR family/aminotransferase family protein
1105	 56.90	0	1142353..1142700	-	115	206576227	-	KPK_1126	-	hypothetical protein
1106	 50.14	-1	1142850..1143212	+	120	206578220	-	KPK_1127	-	hypothetical protein
1107	 56.00	0	1143289..1143738	-	149	206577699	-	KPK_1128	-	hypothetical protein
1108	 35.56	-2	1143816..1143950	+	44	206579406	-	KPK_1129	-	hypothetical protein
1109	 52.49	0	1144467..1144868	+	133	206578659	stpA	KPK_1130	-	DNA-binding protein StpA
1110	 56.11	0	1144947..1145126	-	59	206576303	-	KPK_1131	-	hypothetical protein
1111	 53.82	0	1145332..1146234	+	300	206580319	-	KPK_1133	-	beta-hydroxylase, aspartyl/asparaginyl family
1112	 65.16	+1	1146231..1146761	-	176	206579892	-	KPK_1132	-	rhodanese domain protein
1113	 62.67	0	1146769..1147068	-	99	206579754	-	KPK_1134	-	transcriptional regulator, ArsR family
1114	 63.70	+1	1147144..1147749	-	201	206578865	-	KPK_1135	-	FMN-dependent NADH-azoreductase
1115	 66.67	+1	1147853..1148770	+	305	206578294	-	KPK_1136	-	transcriptional regulator, LysR family
1116	 64.15	+1	1148830..1149426	+	198	206577344	-	KPK_1137	-	PAP2 family protein
1117	 65.27	+1	1149429..1151216	-	595	206576755	-	KPK_1138	-	sigma-54 dependent transcriptional regulator
1118	 34.13	-2	1151268..1151393	-	41	206576173	-	KPK_1139	-	hypothetical protein
1119	 60.88	0	1151480..1153000	+	506	206580637	olgA	KPK_1140	-	aldehyde dehydrogenase
1120	 30.77	-2	1153201..1153317	+	38	206580082	-	KPK_1141	-	hypothetical protein
1121	 58.42	0	1153702..1154295	+	197	206576873	-	KPK_1142	-	fimbrial protein
1122	 38.46	-2	1154362..1154478	+	38	206577281	-	KPK_1143	-	hypothetical protein
1123	 55.05	0	1154488..1155150	+	220	206578054	-	KPK_1144	-	gram-negative pili assembly chaperone protein
1124	 62.69	0	1155280..1157742	+	820	206578454	-	KPK_1145	-	fimbrial usher protein
1125	 62.10	0	1157750..1158844	+	364	206580573	-	KPK_1147	-	fimbrial protein
1126	 59.42	0	1158841..1159530	-	229	206579805	-	KPK_1146	-	gram-negative pili assembly chaperone protein
1127	 59.96	0	1159567..1160118	-	183	206581001	-	KPK_1148	-	fimbrial protein
1128	 60.37	0	1160660..1161421	+	253	206576282	pheC	KPK_1149	-	prephenate dehydratase/arogenate dehydratase
1129	 61.51	0	1161476..1162096	-	206	206577687	-	KPK_1150	-	hypothetical protein
1130	 63.27	0	1162254..1163048	-	264	206578122	-	KPK_1151	-	oxidoreductase, short chain dehydrogenase/reductase family
1131	 65.27	+1	1163109..1164041	-	310	206580729	-	KPK_1152	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
1132	 62.83	0	1164047..1164775	-	242	206575792	-	KPK_1153	-	class II aldolase/adducin domain protein
1133	 61.80	0	1164776..1166296	-	506	206576834	-	KPK_1154	-	amino acid ABC transporter, permease protein/ATP-binding protein
1134	 60.45	0	1166327..1167130	-	267	206577271	-	KPK_1155	-	amino acid ABC transporter, periplasmic amino acid-binding protein
1135	 61.47	0	1167150..1168208	-	352	206578839	-	KPK_1156	-	oxidoreductase, 2OG-Fe(II) oxygenase family
1136	 65.74	+1	1168214..1169077	-	287	206579602	-	KPK_1157	-	AP endonuclease, family 2
1137	 61.93	0	1169088..1170038	-	316	206579223	-	KPK_1158	-	agmatinase SpeB homolog
1138	 59.76	0	1170154..1171065	+	303	206581108	-	KPK_1159	-	transcriptional regulator, LysR family
1139	 57.87	0	1171714..1174602	+	962	206577142	-	KPK_1160	-	peptidoglycan binding domain/papain family cysteine protease
1140	 56.25	0	1174791..1175270	+	159	206577940	-	KPK_1161	-	putative transcriptional regulator
1141	 60.80	0	1175337..1178489	-	1050	206578405	oqxB	KPK_1162	-	RND family multidrug efflux permease protein OqxB
1142	 59.44	0	1178513..1179688	-	391	206577649	oqxA	KPK_1163	-	RND multidrug efflux membrane fusion protein OqxA
1143	 57.34	0	1180022..1180375	+	117	206579198	-	KPK_1164	-	transcriptional regulator, AraC family
1144	 56.89	0	1180395..1180967	-	190	206578464	-	KPK_1165	-	hypothetical protein
1145	 60.90	0	1181178..1182062	+	294	206580017	-	KPK_1166	-	transcriptional regulator, LysR family
1146	 55.68	0	1182197..1182997	+	266	206579224	-	KPK_1167	-	hypothetical protein
1147	 43.80	-1	1183140..1183502	-	120	206576891	-	KPK_1168	-	cupin domain protein
1148	 54.04	0	1183952..1184521	-	189	206576130	-	KPK_1169	-	DNA-binding protein
1149	 47.73	-1	1184623..1184754	-	43	206578492	-	KPK_1170	-	hypothetical protein
1150	 54.52	0	1184923..1185663	-	246	206578412	-	KPK_1171	-	NAD dependent epimerase/dehydratase family
1151	 47.66	-1	1185994..1187745	+	583	206579854	-	KPK_1172	-	OLD family TOPRIM nucleotidyl transferase/hydrolase domain protein
1152	 48.42	-1	1187742..1189517	+	591	206580765	-	KPK_1173	-	helicase, UvrD/REP family
1153	 43.45	-2	1189580..1191457	+	625	206578831	-	KPK_1174	-	KAP family P-loop domain protein
1154	 46.79	-1	1191457..1192266	+	269	206579567	-	KPK_1175	-	hypothetical protein
1155	 43.68	-2	1192263..1193528	+	421	206578238	-	KPK_1176	-	hypothetical protein
1156	 46.23	-1	1194530..1195444	+	304	206577976	-	KPK_1177	-	hypothetical protein
1157	 55.49	0	1196260..1196742	-	160	206575767	smpB	KPK_1178	-	SsrA-binding protein
1158	 53.88	0	1196892..1197329	+	145	206576519	-	KPK_1179	-	polyketide cyclase/dehydrase family protein
1159	 56.70	0	1197319..1197609	+	96	206580599	-	KPK_1180	-	RnfH family protein
1160	 53.22	0	1197679..1198020	-	113	206578975	-	KPK_1181	-	lipoprotein, SmpA/OmlA family
1161	 62.58	0	1198168..1199829	-	553	206579944	recN	KPK_1182	-	DNA repair protein RecN
1162	 58.02	0	1199916..1200794	-	292	206576620	ppnK	KPK_1183	-	NAD(+) kinase
1163	 56.18	0	1200919..1201509	+	196	206578715	grpE	KPK_1184	-	co-chaperone GrpE
1164	 56.80	0	1201628..1202914	-	428	206580160	-	KPK_1185	-	putative transporter
1165	 56.69	0	1202934..1203725	-	263	206579775	-	KPK_1186	-	cytochrome c assembly protein
1166	 59.05	0	1203889..1205253	+	454	206578967	ffh	KPK_1187	-	signal recognition particle protein
1167	 55.02	0	1205560..1205808	+	82	206577898	rpsP	KPK_1188	-	ribosomal protein S16
1168	 49.73	-1	1205827..1206375	+	182	206577100	rimM	KPK_1189	-	16S rRNA processing protein RimM
57.01	MEAN

6.61	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.