IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
834	 63.23	0	960807..961562	-	251	152969416	moeB	KPN_00859	-	molybdopterin biosynthesis protein MoeB
835	 64.08	+1	961562..962797	-	411	152969417	moeA	KPN_00860	-	molybdopterin biosynthesis protein MoeA
836	 63.59	0	963033..963974	+	313	152969418	ybiK	KPN_00861	-	L-asparaginase
837	 64.25	+1	963992..965851	+	619	152969419	yliA	KPN_00862	-	glutathione transporter ATP-binding protein
838	 58.43	0	965884..967425	+	513	152969420	yliB	KPN_00863	-	peptide ABC transporter periplasmic substrate-binding protein
839	 60.80	0	967472..968392	+	306	152969421	yliC	KPN_00864	-	peptide ABC transporter membrane protein
840	 61.84	0	968436..969305	+	289	152969422	yliD	KPN_00865	-	peptide ABC transporter membrane protein
841	 59.35	0	969710..971035	-	441	152969423	yliG	KPN_00866	-	hypothetical protein
842	 54.83	0	971268..972509	-	413	152969424	-	KPN_00867	-	putative proton/sugar symporter, LacY
843	 50.95	-1	972852..973271	+	139	152969425	yliH	KPN_00868	-	biofilm formation regulatory protein BssR
844	 62.70	0	973387..974496	+	369	152969426	yliI	KPN_00869	-	putative dehydrogenase
845	 60.61	0	974499..975125	-	208	152969427	yliJ	KPN_00870	-	putative glutathione S-transferase
846	 56.53	0	977437..978639	+	400	152969428	dacC	KPN_00871	-	D-alanyl-D-alanine carboxypeptidase fraction C
847	 59.95	0	978678..979436	-	252	152969429	deoR	KPN_00872	-	DNA-binding transcriptional repressor DeoR
848	 62.63	0	979538..980131	-	197	152969430	ybjG	KPN_00873	-	undecaprenyl pyrophosphate phosphatase
849	 60.26	0	980459..981691	+	410	152969431	cmr	KPN_00874	-	major facilitator superfamily multidrug/chloramphenicol efflux transporter
850	 56.83	0	981729..982541	-	270	152969432	ybjI	KPN_00875	-	hypothetical protein
851	 64.84	+1	982541..983743	-	400	152969433	ybjJ	KPN_00876	-	putative DEOR-type transcriptional regulator
852	 62.94	0	983826..984389	+	187	152969434	ybjK	KPN_00877	-	putative DEOR-type transcriptional regulator
853	 61.69	0	984567..986054	-	495	152969435	ybjL	KPN_00878	-	hypothetical protein
854	 61.72	0	986600..986902	+	100	152969436	ybjM	KPN_00879	-	hypothetical protein
855	 50.38	-1	986909..987172	-	87	152969437	grxA	KPN_00880	-	glutaredoxin 1
856	 57.99	0	987375..987662	+	95	152969438	ybjC	KPN_00881	-	hypothetical protein
857	 62.52	0	987646..988368	+	240	152969439	nfsA	KPN_00882	-	nitroreductase A
858	 64.77	+1	988597..989385	+	262	152969440	rimK	KPN_00883	-	ribosomal protein S6 modification protein
859	 54.17	0	989474..989953	+	159	152969441	ybjN	KPN_00884	-	putative sensory transduction regulator
860	 55.53	0	990302..991414	+	370	152969442	potF	KPN_00885	-	putrescine transporter subunit: periplasmic-binding component of ABC superfamily
861	 59.39	0	991530..992711	+	393	152969443	potG	KPN_00886	-	putrescine transporter ATP-binding subunit
862	 59.22	0	992722..993675	+	317	152969444	potH	KPN_00887	-	putrescine transporter subunit: membrane component of ABC superfamily
863	 62.29	0	993672..994517	+	281	152969445	potI	KPN_00888	-	putrescine transporter subunit: membrane component of ABC superfamily
864	 56.24	0	994575..995063	+	162	152969446	ybjO	KPN_00889	-	hypothetical protein
865	 63.56	0	995105..996232	+	375	152969447	ybjF	KPN_00890	-	23S rRNA methyluridine methyltransferase
866	 61.65	0	996311..997027	+	238	152969448	-	KPN_00891	-	putative positive response regulator
867	 63.34	0	997024..998496	+	490	152969449	-	KPN_00892	-	putative signal transduction histidine kinase
868	 54.23	0	998583..999314	-	243	152969450	artJ	KPN_00893	-	arginine 3rd transport system periplasmic binding protein
869	 58.15	0	999498..1000166	-	222	152969451	artM	KPN_00894	-	arginine transporter permease subunit ArtM
870	 59.97	0	1000166..1000882	-	238	152969452	artQ	KPN_00895	-	arginine transporter permease subunit ArtQ
871	 55.38	0	1000889..1001641	-	250	152969453	artI	KPN_00896	-	arginine 3rd transport system periplasmic binding protein
872	 59.26	0	1001641..1002369	-	242	152969454	artP	KPN_00897	-	arginine transporter ATP-binding subunit
873	 61.24	0	1002596..1003111	-	171	152969455	ybjP	KPN_00898	-	putative lipoprotein
874	 53.47	0	1004075..1005127	+	350	152969456	-	KPN_00899	-	hypothetical protein
875	 59.23	0	1005102..1005989	+	295	152969457	ybjR	KPN_00900	-	N-acetylmuramoyl-L-alanine amidase
876	 58.58	0	1005986..1006999	-	337	152969458	ybjS	KPN_00901	-	putative dehydrogenase, NAD(P)-binding
877	 60.71	0	1007087..1008529	-	480	152969459	ybjT	KPN_00902	-	hypothetical protein
878	 63.77	+1	1008540..1009541	-	333	152969460	ltaE	KPN_00903	-	L-threonine aldolase
879	 60.53	0	1009580..1011307	-	575	152969461	poxB	KPN_00904	-	pyruvate dehydrogenase
880	 57.70	0	1011450..1011884	+	144	152969462	-	KPN_00905	-	hypothetical protein
881	 61.32	0	1012096..1013031	-	311	152969463	hcr	KPN_00906	-	HCP oxidoreductase, NADH-dependent
882	 58.54	0	1013075..1014760	-	561	152969464	hcp	KPN_00907	-	hydroxylamine reductase
883	 53.89	0	1014871..1015770	-	299	152969465	ybjE	KPN_00908	-	putative surface protein
884	 60.49	0	1015886..1016581	-	231	152969466	aqpZ	KPN_00909	-	aquaporin Z
885	 59.49	0	1017001..1018659	+	552	152969467	ybjD	KPN_00910	-	hypothetical protein
886	 59.23	0	1018806..1019921	+	371	152969468	macA	KPN_00911	-	macrolide transporter subunit MacA
887	 60.38	0	1019918..1021858	+	646	152969469	macB	KPN_00912	-	macrolide transporter ATP-binding /permease protein
888	 52.25	0	1021935..1022156	-	73	152969470	cspD	KPN_00913	-	DNA replication inhibitor
889	 45.91	-2	1022482..1022799	+	105	152969471	clpS	KPN_00914	-	ATP-dependent Clp protease adaptor protein ClpS
890	 57.02	0	1022830..1025109	+	759	152969472	clpA	KPN_00915	-	ATP-dependent Clp protease ATP-binding subunit
891	 49.77	-1	1025229..1025447	-	72	152969473	infA	KPN_00916	-	translation initiation factor IF-1
892	 58.97	0	1025801..1026502	-	233	152969474	aat	KPN_00917	-	leucyl/phenylalanyl-tRNA--protein transferase
893	 62.31	0	1026547..1028268	-	573	152969475	cydC	KPN_00918	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
894	 61.57	0	1028269..1030035	-	588	152969476	cydD	KPN_00919	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
895	 58.53	0	1030150..1031145	-	331	152969477	trxB	KPN_00920	-	thioredoxin reductase
896	 47.88	-1	1031651..1032145	+	164	152969478	lrp	KPN_00921	-	leucine-responsive transcriptional regulator
897	 62.62	0	1032281..1036534	+	1417	152969479	ftsK	KPN_00922	-	cell division protein
898	 55.56	0	1036657..1037268	+	203	152969480	lolA	KPN_00923	-	outer-membrane lipoprotein carrier protein
899	 60.71	0	1037277..1038620	+	447	152969481	ycaJ	KPN_00924	-	recombination factor protein RarA
900	 57.93	0	1038711..1040003	+	430	152969482	serS	KPN_00925	-	seryl-tRNA synthetase
901	 58.02	0	1040204..1042642	+	812	152969483	dmsA	KPN_00926	-	anaerobic dimethyl sulfoxide (DMSO) reductase, subunit A
902	 59.55	0	1042653..1043270	+	205	152969484	dmsB	KPN_00927	-	anaerobic dimethyl sulfoxide (DMSO) reductase, subunit B
903	 61.57	0	1043272..1044135	+	287	152969485	dmsC	KPN_00928	-	anaerobic dimethyl sulfoxide (DMSO) reductase, subunit C
904	 60.05	0	1044410..1045558	+	382	152969486	ycaD	KPN_00929	-	MFS family transporter
905	 53.98	0	1045721..1046461	-	246	152969487	pflA	KPN_00930	-	pyruvate formate lyase-activating enzyme 1
906	 53.31	0	1046653..1048935	-	760	152969488	pflB	KPN_00931	-	formate acetyltransferase 1
907	 52.33	0	1048987..1049802	-	271	152969489	focA	KPN_00932	-	formate transporter
908	 58.49	0	1050230..1051990	-	586	152969490	ycaO	KPN_00933	-	hypothetical protein
909	 55.99	0	1052106..1052798	+	230	152969491	ycaP	KPN_00934	-	hypothetical protein
910	 58.31	0	1052987..1054075	+	362	152969492	serC	KPN_00935	-	phosphoserine aminotransferase
911	 61.53	0	1054149..1055432	+	427	152969493	aroA	KPN_00936	-	3-phosphoshikimate 1-carboxyvinyltransferase
912	 57.89	0	1055607..1056290	+	227	152969494	cmk	KPN_00937	-	cytidylate kinase
913	 52.21	0	1056424..1058097	+	557	152969495	rpsA	KPN_00938	-	30S ribosomal protein S1
914	 48.96	-1	1058249..1058536	+	95	152969496	himD	KPN_00939	-	integration host factor subunit beta
915	 63.05	0	1058742..1061006	+	754	152969497	ycaI	KPN_00940	-	recombination protein
916	 56.72	0	1061043..1062791	+	582	152969498	msbA	KPN_00941	-	lipid transporter ATP-binding/permease protein
917	 63.71	+1	1062788..1063768	+	326	152969499	lpxK	KPN_00942	-	tetraacyldisaccharide 4'-kinase
918	 62.70	0	1063943..1065052	+	369	152969500	ycaQ	KPN_00943	-	hypothetical protein
919	 53.01	0	1065116..1065298	+	60	152969501	ycaR	KPN_00944	-	hypothetical protein
920	 61.31	0	1065295..1066041	+	248	152969502	kdsB	KPN_00945	-	3-deoxy-manno-octulosonate cytidylyltransferase
921	 61.19	0	1066179..1067072	+	297	152969503	ycbJ	KPN_00946	-	hypothetical protein
922	 62.56	0	1067049..1067828	-	259	152969504	ycbC	KPN_00947	-	hypothetical protein
923	 55.97	0	1067938..1068750	+	270	152969505	smtA	KPN_00948	-	putative metallothionein SmtA
924	 57.29	0	1068747..1070069	+	440	152969506	mukF	KPN_00949	-	condesin subunit F
925	 56.74	0	1070050..1070754	+	234	152969507	mukE	KPN_00950	-	condesin subunit E
926	 60.96	0	1070754..1075202	+	1482	152969508	mukB	KPN_00951	-	cell division protein MukB
927	 58.25	0	1075460..1077193	+	577	152969509	ycbB	KPN_00952	-	hypothetical protein
928	 50.68	-1	1077391..1078047	+	218	152969510	ycbK	KPN_00953	-	hypothetical protein
929	 59.41	0	1078061..1078708	+	215	152969511	ycbL	KPN_00954	-	putative enzyme
930	 57.68	0	1078777..1079967	-	396	152969512	aspC	KPN_00955	-	aromatic amino acid aminotransferase
931	 55.02	0	1080309..1081235	-	308	152969513	ompF	KPN_00956	-	outer membrane protein 1a
932	 34.26	-2	1081235..1081342	-	35	152969514	-	KPN_00957	-	hypothetical protein
933	 56.80	0	1081394..1083421	+	675	152969515	hsdM	KPN_00958	-	DNA methylase M, host modification
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.