IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
802	 60.00	0	921793..922542	+	249	152969384	-	KPN_00827	-	putative short-chain dehydrogenase/reductase SDR
803	 60.28	0	922556..923401	+	281	152969385	-	KPN_00828	-	putative transketolase
804	 60.42	0	923401..924393	+	330	152969386	-	KPN_00829	-	putative transketolase
805	 62.98	0	924608..925963	+	451	152969387	rhlE	KPN_00830	-	ATP-dependent RNA helicase RhlE
806	 59.94	0	926151..928307	+	718	152969388	dinG	KPN_00831	-	ATP-dependent DNA helicase DinG
807	 63.26	0	928337..929305	+	322	152969389	ybiB	KPN_00832	-	hypothetical protein
808	 53.26	0	929415..929675	-	86	152969390	ybiJ	KPN_00833	-	hypothetical protein
809	 64.26	+1	930248..930538	-	96	152969391	ybiM	KPN_00834	-	hypothetical protein
810	 60.33	0	930648..931262	-	204	152969392	-	KPN_00835	-	hypothetical protein
811	 60.44	0	931359..932273	+	304	152969393	ybiN	KPN_00836	-	putative SAM-dependent methyltransferase
812	 59.97	0	932276..934471	-	731	152969394	ybiO	KPN_00837	-	hypothetical protein
813	 57.26	0	934583..935305	-	240	152969395	glnQ	KPN_00838	-	glutamine ABC transporter ATP-binding protein
814	 58.79	0	935302..935961	-	219	152969396	glnP	KPN_00839	-	glutamine ABC transporter permease protein
815	 51.27	-1	936087..936833	-	248	152969397	glnH	KPN_00840	-	glutamine ABC transporter periplasmic protein
816	 54.17	0	937242..937745	-	167	152969398	dps	KPN_00841	-	DNA starvation/stationary phase protection protein Dps
817	 62.95	0	937983..938870	-	295	152969399	ybiF	KPN_00842	-	threonine and homoserine efflux system
818	 51.27	-1	939222..939734	+	170	152969400	ompX	KPN_00843	-	outer membrane protein X
819	 54.78	0	939825..941405	-	526	152969401	ybiP	KPN_00844	-	putative enzyme
820	 58.22	0	942021..942458	+	145	152969402	mntR	KPN_00845	-	manganese transport regulator MntR
821	 59.48	0	942455..943567	+	370	152969403	ybiR	KPN_00846	-	putative transport protein
822	 55.81	0	943788..945113	+	441	152969404	-	KPN_00847	-	glycoside hydrolase family protein 1
823	 58.37	0	945164..945898	+	244	152969405	-	KPN_00848	-	putative transcriptional regulator
824	 57.27	0	946043..946957	-	304	152969406	ybiS	KPN_00849	-	hypothetical protein
825	 62.98	0	947158..947943	-	261	152969407	-	KPN_00850	-	anaerobic C4-dicarboxylate transporter
826	 57.04	0	948146..949714	+	522	152969408	ybiT	KPN_00851	-	putative ATP-binding component of a transport system
827	 59.90	0	949870..952233	-	787	152969409	-	KPN_00852	-	putative alpha-xylosidase
828	 58.83	0	952249..953550	-	433	152969410	-	KPN_00853	-	putative general substrate transporter
829	 64.34	+1	953849..954922	+	357	152969411	-	KPN_00854	-	putative periplasmic binding protein/LacI transcriptional regulator
830	 61.30	0	954919..956184	-	421	152969412	ybiU	KPN_00855	-	hypothetical protein
831	 54.90	0	956324..957139	-	271	152969413	ybiV	KPN_00856	-	hypothetical protein
832	 59.97	0	957316..959748	-	810	152969414	ybiW	KPN_00857	-	putative formate acetyltransferase 3
833	 60.33	0	959753..960652	-	299	152969415	ybiY	KPN_00858	-	putative pyruvate formate lyase activating enzyme
834	 63.23	0	960807..961562	-	251	152969416	moeB	KPN_00859	-	molybdopterin biosynthesis protein MoeB
835	 64.08	+1	961562..962797	-	411	152969417	moeA	KPN_00860	-	molybdopterin biosynthesis protein MoeA
836	 63.59	0	963033..963974	+	313	152969418	ybiK	KPN_00861	-	L-asparaginase
837	 64.25	+1	963992..965851	+	619	152969419	yliA	KPN_00862	-	glutathione transporter ATP-binding protein
838	 58.43	0	965884..967425	+	513	152969420	yliB	KPN_00863	-	peptide ABC transporter periplasmic substrate-binding protein
839	 60.80	0	967472..968392	+	306	152969421	yliC	KPN_00864	-	peptide ABC transporter membrane protein
840	 61.84	0	968436..969305	+	289	152969422	yliD	KPN_00865	-	peptide ABC transporter membrane protein
841	 59.35	0	969710..971035	-	441	152969423	yliG	KPN_00866	-	hypothetical protein
842	 54.83	0	971268..972509	-	413	152969424	-	KPN_00867	-	putative proton/sugar symporter, LacY
843	 50.95	-1	972852..973271	+	139	152969425	yliH	KPN_00868	-	biofilm formation regulatory protein BssR
844	 62.70	0	973387..974496	+	369	152969426	yliI	KPN_00869	-	putative dehydrogenase
845	 60.61	0	974499..975125	-	208	152969427	yliJ	KPN_00870	-	putative glutathione S-transferase
846	 56.53	0	977437..978639	+	400	152969428	dacC	KPN_00871	-	D-alanyl-D-alanine carboxypeptidase fraction C
847	 59.95	0	978678..979436	-	252	152969429	deoR	KPN_00872	-	DNA-binding transcriptional repressor DeoR
848	 62.63	0	979538..980131	-	197	152969430	ybjG	KPN_00873	-	undecaprenyl pyrophosphate phosphatase
849	 60.26	0	980459..981691	+	410	152969431	cmr	KPN_00874	-	major facilitator superfamily multidrug/chloramphenicol efflux transporter
850	 56.83	0	981729..982541	-	270	152969432	ybjI	KPN_00875	-	hypothetical protein
851	 64.84	+1	982541..983743	-	400	152969433	ybjJ	KPN_00876	-	putative DEOR-type transcriptional regulator
852	 62.94	0	983826..984389	+	187	152969434	ybjK	KPN_00877	-	putative DEOR-type transcriptional regulator
853	 61.69	0	984567..986054	-	495	152969435	ybjL	KPN_00878	-	hypothetical protein
854	 61.72	0	986600..986902	+	100	152969436	ybjM	KPN_00879	-	hypothetical protein
855	 50.38	-1	986909..987172	-	87	152969437	grxA	KPN_00880	-	glutaredoxin 1
856	 57.99	0	987375..987662	+	95	152969438	ybjC	KPN_00881	-	hypothetical protein
857	 62.52	0	987646..988368	+	240	152969439	nfsA	KPN_00882	-	nitroreductase A
858	 64.77	+1	988597..989385	+	262	152969440	rimK	KPN_00883	-	ribosomal protein S6 modification protein
859	 54.17	0	989474..989953	+	159	152969441	ybjN	KPN_00884	-	putative sensory transduction regulator
860	 55.53	0	990302..991414	+	370	152969442	potF	KPN_00885	-	putrescine transporter subunit: periplasmic-binding component of ABC superfamily
861	 59.39	0	991530..992711	+	393	152969443	potG	KPN_00886	-	putrescine transporter ATP-binding subunit
862	 59.22	0	992722..993675	+	317	152969444	potH	KPN_00887	-	putrescine transporter subunit: membrane component of ABC superfamily
863	 62.29	0	993672..994517	+	281	152969445	potI	KPN_00888	-	putrescine transporter subunit: membrane component of ABC superfamily
864	 56.24	0	994575..995063	+	162	152969446	ybjO	KPN_00889	-	hypothetical protein
865	 63.56	0	995105..996232	+	375	152969447	ybjF	KPN_00890	-	23S rRNA methyluridine methyltransferase
866	 61.65	0	996311..997027	+	238	152969448	-	KPN_00891	-	putative positive response regulator
867	 63.34	0	997024..998496	+	490	152969449	-	KPN_00892	-	putative signal transduction histidine kinase
868	 54.23	0	998583..999314	-	243	152969450	artJ	KPN_00893	-	arginine 3rd transport system periplasmic binding protein
869	 58.15	0	999498..1000166	-	222	152969451	artM	KPN_00894	-	arginine transporter permease subunit ArtM
870	 59.97	0	1000166..1000882	-	238	152969452	artQ	KPN_00895	-	arginine transporter permease subunit ArtQ
871	 55.38	0	1000889..1001641	-	250	152969453	artI	KPN_00896	-	arginine 3rd transport system periplasmic binding protein
872	 59.26	0	1001641..1002369	-	242	152969454	artP	KPN_00897	-	arginine transporter ATP-binding subunit
873	 61.24	0	1002596..1003111	-	171	152969455	ybjP	KPN_00898	-	putative lipoprotein
874	 53.47	0	1004075..1005127	+	350	152969456	-	KPN_00899	-	hypothetical protein
875	 59.23	0	1005102..1005989	+	295	152969457	ybjR	KPN_00900	-	N-acetylmuramoyl-L-alanine amidase
876	 58.58	0	1005986..1006999	-	337	152969458	ybjS	KPN_00901	-	putative dehydrogenase, NAD(P)-binding
877	 60.71	0	1007087..1008529	-	480	152969459	ybjT	KPN_00902	-	hypothetical protein
878	 63.77	+1	1008540..1009541	-	333	152969460	ltaE	KPN_00903	-	L-threonine aldolase
879	 60.53	0	1009580..1011307	-	575	152969461	poxB	KPN_00904	-	pyruvate dehydrogenase
880	 57.70	0	1011450..1011884	+	144	152969462	-	KPN_00905	-	hypothetical protein
881	 61.32	0	1012096..1013031	-	311	152969463	hcr	KPN_00906	-	HCP oxidoreductase, NADH-dependent
882	 58.54	0	1013075..1014760	-	561	152969464	hcp	KPN_00907	-	hydroxylamine reductase
883	 53.89	0	1014871..1015770	-	299	152969465	ybjE	KPN_00908	-	putative surface protein
884	 60.49	0	1015886..1016581	-	231	152969466	aqpZ	KPN_00909	-	aquaporin Z
885	 59.49	0	1017001..1018659	+	552	152969467	ybjD	KPN_00910	-	hypothetical protein
886	 59.23	0	1018806..1019921	+	371	152969468	macA	KPN_00911	-	macrolide transporter subunit MacA
887	 60.38	0	1019918..1021858	+	646	152969469	macB	KPN_00912	-	macrolide transporter ATP-binding /permease protein
888	 52.25	0	1021935..1022156	-	73	152969470	cspD	KPN_00913	-	DNA replication inhibitor
889	 45.91	-2	1022482..1022799	+	105	152969471	clpS	KPN_00914	-	ATP-dependent Clp protease adaptor protein ClpS
890	 57.02	0	1022830..1025109	+	759	152969472	clpA	KPN_00915	-	ATP-dependent Clp protease ATP-binding subunit
891	 49.77	-1	1025229..1025447	-	72	152969473	infA	KPN_00916	-	translation initiation factor IF-1
892	 58.97	0	1025801..1026502	-	233	152969474	aat	KPN_00917	-	leucyl/phenylalanyl-tRNA--protein transferase
893	 62.31	0	1026547..1028268	-	573	152969475	cydC	KPN_00918	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
894	 61.57	0	1028269..1030035	-	588	152969476	cydD	KPN_00919	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
895	 58.53	0	1030150..1031145	-	331	152969477	trxB	KPN_00920	-	thioredoxin reductase
896	 47.88	-1	1031651..1032145	+	164	152969478	lrp	KPN_00921	-	leucine-responsive transcriptional regulator
897	 62.62	0	1032281..1036534	+	1417	152969479	ftsK	KPN_00922	-	cell division protein
898	 55.56	0	1036657..1037268	+	203	152969480	lolA	KPN_00923	-	outer-membrane lipoprotein carrier protein
899	 60.71	0	1037277..1038620	+	447	152969481	ycaJ	KPN_00924	-	recombination factor protein RarA
900	 57.93	0	1038711..1040003	+	430	152969482	serS	KPN_00925	-	seryl-tRNA synthetase
901	 58.02	0	1040204..1042642	+	812	152969483	dmsA	KPN_00926	-	anaerobic dimethyl sulfoxide (DMSO) reductase, subunit A
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.