IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
773	 61.84	0	891914..892390	-	158	152969355	ybhB	KPN_00798	-	putative kinase inhibitor protein
774	 62.33	0	892461..893750	-	429	152969356	bioA	KPN_00799	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
775	 59.39	0	893988..895004	+	338	152969357	bioB	KPN_00800	-	biotin synthesis, sulfur insertion?
776	 67.62	+1	895001..896158	+	385	152969358	bioF	KPN_00801	-	8-amino-7-oxononanoate synthase
777	 67.59	+1	896142..896897	+	251	152969359	bioC	KPN_00802	-	biotin biosynthesis protein BioC
778	 63.76	+1	896890..897612	+	240	152969360	bioD	KPN_00803	-	dithiobiotin synthetase
779	 60.53	0	898988..901009	+	673	152969361	uvrB	KPN_00804	-	excinuclease ABC subunit B
780	 48.33	-1	901139..901258	-	39	152969362	-	KPN_00805	-	putative cation/multidrug efflux pump
781	 61.75	0	901258..902355	-	365	152969363	-	KPN_00806	-	sensor protein BasS/PmrB
782	 57.14	0	902359..903030	-	223	152969364	-	KPN_00807	-	DNA-binding transcriptional regulator BasR
783	 55.45	0	903030..904670	-	546	152969365	-	KPN_00808	-	putative cell division protein
784	 59.82	0	904775..905680	-	301	152969366	ybhK	KPN_00809	-	putative phosphatase/sulfatase
785	 59.70	0	906015..907004	+	329	152969367	moaA	KPN_00810	-	molybdenum cofactor biosynthesis protein A
786	 61.60	0	907028..907540	+	170	152969368	moaB	KPN_00811	-	molybdopterin biosynthesis protein B
787	 58.90	0	907544..908032	+	162	152969369	moaC	KPN_00812	-	molybdenum cofactor biosynthesis protein C
788	 62.65	0	908025..908273	+	82	152969370	moaD	KPN_00813	-	molybdopterin biosynthesis protein
789	 63.58	0	908275..908727	+	150	152969371	moaE	KPN_00814	-	molybdopterin synthase large subunit
790	 56.45	0	908773..909477	+	234	152969372	ybhL	KPN_00815	-	putative transport protein
791	 58.25	0	909658..910596	-	312	152969373	ybhN	KPN_00816	-	putative negative regulator
792	 60.32	0	910620..911864	-	414	152969374	ybhO	KPN_00817	-	cardiolipin synthase 2
793	 59.32	0	911861..912622	-	253	152969375	ybhP	KPN_00818	-	putative DNase
794	 59.82	0	912754..913191	+	145	152969376	ybhQ	KPN_00819	-	hypothetical protein
795	 57.24	0	913252..914397	-	381	152969377	ybhR	KPN_00820	-	ABC transporter membrane protein
796	 59.17	0	914488..915621	-	377	152969378	ybhS	KPN_00821	-	ABC transporter membrane protein
797	 60.98	0	915611..917350	-	579	152969379	ybhF	KPN_00822	-	putative ATP-binding component of a transport system
798	 63.45	0	917343..918338	-	331	152969380	ybhG	KPN_00823	-	hypothetical protein
799	 57.88	0	918338..918997	-	219	152969381	ybiH	KPN_00824	-	putative DNA-binding transcriptional regulator
800	 54.76	0	919071..919994	-	307	152969382	-	KPN_00825	-	transcriptional regulator LysR
801	 50.98	-1	920411..921742	+	443	152969383	-	KPN_00826	-	putative general substrate transporter
802	 60.00	0	921793..922542	+	249	152969384	-	KPN_00827	-	putative short-chain dehydrogenase/reductase SDR
803	 60.28	0	922556..923401	+	281	152969385	-	KPN_00828	-	putative transketolase
804	 60.42	0	923401..924393	+	330	152969386	-	KPN_00829	-	putative transketolase
805	 62.98	0	924608..925963	+	451	152969387	rhlE	KPN_00830	-	ATP-dependent RNA helicase RhlE
806	 59.94	0	926151..928307	+	718	152969388	dinG	KPN_00831	-	ATP-dependent DNA helicase DinG
807	 63.26	0	928337..929305	+	322	152969389	ybiB	KPN_00832	-	hypothetical protein
808	 53.26	0	929415..929675	-	86	152969390	ybiJ	KPN_00833	-	hypothetical protein
809	 64.26	+1	930248..930538	-	96	152969391	ybiM	KPN_00834	-	hypothetical protein
810	 60.33	0	930648..931262	-	204	152969392	-	KPN_00835	-	hypothetical protein
811	 60.44	0	931359..932273	+	304	152969393	ybiN	KPN_00836	-	putative SAM-dependent methyltransferase
812	 59.97	0	932276..934471	-	731	152969394	ybiO	KPN_00837	-	hypothetical protein
813	 57.26	0	934583..935305	-	240	152969395	glnQ	KPN_00838	-	glutamine ABC transporter ATP-binding protein
814	 58.79	0	935302..935961	-	219	152969396	glnP	KPN_00839	-	glutamine ABC transporter permease protein
815	 51.27	-1	936087..936833	-	248	152969397	glnH	KPN_00840	-	glutamine ABC transporter periplasmic protein
816	 54.17	0	937242..937745	-	167	152969398	dps	KPN_00841	-	DNA starvation/stationary phase protection protein Dps
817	 62.95	0	937983..938870	-	295	152969399	ybiF	KPN_00842	-	threonine and homoserine efflux system
818	 51.27	-1	939222..939734	+	170	152969400	ompX	KPN_00843	-	outer membrane protein X
819	 54.78	0	939825..941405	-	526	152969401	ybiP	KPN_00844	-	putative enzyme
820	 58.22	0	942021..942458	+	145	152969402	mntR	KPN_00845	-	manganese transport regulator MntR
821	 59.48	0	942455..943567	+	370	152969403	ybiR	KPN_00846	-	putative transport protein
822	 55.81	0	943788..945113	+	441	152969404	-	KPN_00847	-	glycoside hydrolase family protein 1
823	 58.37	0	945164..945898	+	244	152969405	-	KPN_00848	-	putative transcriptional regulator
824	 57.27	0	946043..946957	-	304	152969406	ybiS	KPN_00849	-	hypothetical protein
825	 62.98	0	947158..947943	-	261	152969407	-	KPN_00850	-	anaerobic C4-dicarboxylate transporter
826	 57.04	0	948146..949714	+	522	152969408	ybiT	KPN_00851	-	putative ATP-binding component of a transport system
827	 59.90	0	949870..952233	-	787	152969409	-	KPN_00852	-	putative alpha-xylosidase
828	 58.83	0	952249..953550	-	433	152969410	-	KPN_00853	-	putative general substrate transporter
829	 64.34	+1	953849..954922	+	357	152969411	-	KPN_00854	-	putative periplasmic binding protein/LacI transcriptional regulator
830	 61.30	0	954919..956184	-	421	152969412	ybiU	KPN_00855	-	hypothetical protein
831	 54.90	0	956324..957139	-	271	152969413	ybiV	KPN_00856	-	hypothetical protein
832	 59.97	0	957316..959748	-	810	152969414	ybiW	KPN_00857	-	putative formate acetyltransferase 3
833	 60.33	0	959753..960652	-	299	152969415	ybiY	KPN_00858	-	putative pyruvate formate lyase activating enzyme
834	 63.23	0	960807..961562	-	251	152969416	moeB	KPN_00859	-	molybdopterin biosynthesis protein MoeB
835	 64.08	+1	961562..962797	-	411	152969417	moeA	KPN_00860	-	molybdopterin biosynthesis protein MoeA
836	 63.59	0	963033..963974	+	313	152969418	ybiK	KPN_00861	-	L-asparaginase
837	 64.25	+1	963992..965851	+	619	152969419	yliA	KPN_00862	-	glutathione transporter ATP-binding protein
838	 58.43	0	965884..967425	+	513	152969420	yliB	KPN_00863	-	peptide ABC transporter periplasmic substrate-binding protein
839	 60.80	0	967472..968392	+	306	152969421	yliC	KPN_00864	-	peptide ABC transporter membrane protein
840	 61.84	0	968436..969305	+	289	152969422	yliD	KPN_00865	-	peptide ABC transporter membrane protein
841	 59.35	0	969710..971035	-	441	152969423	yliG	KPN_00866	-	hypothetical protein
842	 54.83	0	971268..972509	-	413	152969424	-	KPN_00867	-	putative proton/sugar symporter, LacY
843	 50.95	-1	972852..973271	+	139	152969425	yliH	KPN_00868	-	biofilm formation regulatory protein BssR
844	 62.70	0	973387..974496	+	369	152969426	yliI	KPN_00869	-	putative dehydrogenase
845	 60.61	0	974499..975125	-	208	152969427	yliJ	KPN_00870	-	putative glutathione S-transferase
846	 56.53	0	977437..978639	+	400	152969428	dacC	KPN_00871	-	D-alanyl-D-alanine carboxypeptidase fraction C
847	 59.95	0	978678..979436	-	252	152969429	deoR	KPN_00872	-	DNA-binding transcriptional repressor DeoR
848	 62.63	0	979538..980131	-	197	152969430	ybjG	KPN_00873	-	undecaprenyl pyrophosphate phosphatase
849	 60.26	0	980459..981691	+	410	152969431	cmr	KPN_00874	-	major facilitator superfamily multidrug/chloramphenicol efflux transporter
850	 56.83	0	981729..982541	-	270	152969432	ybjI	KPN_00875	-	hypothetical protein
851	 64.84	+1	982541..983743	-	400	152969433	ybjJ	KPN_00876	-	putative DEOR-type transcriptional regulator
852	 62.94	0	983826..984389	+	187	152969434	ybjK	KPN_00877	-	putative DEOR-type transcriptional regulator
853	 61.69	0	984567..986054	-	495	152969435	ybjL	KPN_00878	-	hypothetical protein
854	 61.72	0	986600..986902	+	100	152969436	ybjM	KPN_00879	-	hypothetical protein
855	 50.38	-1	986909..987172	-	87	152969437	grxA	KPN_00880	-	glutaredoxin 1
856	 57.99	0	987375..987662	+	95	152969438	ybjC	KPN_00881	-	hypothetical protein
857	 62.52	0	987646..988368	+	240	152969439	nfsA	KPN_00882	-	nitroreductase A
858	 64.77	+1	988597..989385	+	262	152969440	rimK	KPN_00883	-	ribosomal protein S6 modification protein
859	 54.17	0	989474..989953	+	159	152969441	ybjN	KPN_00884	-	putative sensory transduction regulator
860	 55.53	0	990302..991414	+	370	152969442	potF	KPN_00885	-	putrescine transporter subunit: periplasmic-binding component of ABC superfamily
861	 59.39	0	991530..992711	+	393	152969443	potG	KPN_00886	-	putrescine transporter ATP-binding subunit
862	 59.22	0	992722..993675	+	317	152969444	potH	KPN_00887	-	putrescine transporter subunit: membrane component of ABC superfamily
863	 62.29	0	993672..994517	+	281	152969445	potI	KPN_00888	-	putrescine transporter subunit: membrane component of ABC superfamily
864	 56.24	0	994575..995063	+	162	152969446	ybjO	KPN_00889	-	hypothetical protein
865	 63.56	0	995105..996232	+	375	152969447	ybjF	KPN_00890	-	23S rRNA methyluridine methyltransferase
866	 61.65	0	996311..997027	+	238	152969448	-	KPN_00891	-	putative positive response regulator
867	 63.34	0	997024..998496	+	490	152969449	-	KPN_00892	-	putative signal transduction histidine kinase
868	 54.23	0	998583..999314	-	243	152969450	artJ	KPN_00893	-	arginine 3rd transport system periplasmic binding protein
869	 58.15	0	999498..1000166	-	222	152969451	artM	KPN_00894	-	arginine transporter permease subunit ArtM
870	 59.97	0	1000166..1000882	-	238	152969452	artQ	KPN_00895	-	arginine transporter permease subunit ArtQ
871	 55.38	0	1000889..1001641	-	250	152969453	artI	KPN_00896	-	arginine 3rd transport system periplasmic binding protein
872	 59.26	0	1001641..1002369	-	242	152969454	artP	KPN_00897	-	arginine transporter ATP-binding subunit
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.