IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
736	 40.43	-2	845712..846557	-	281	152969318	-	KPN_00761	-	fumarate hydratase
737	 35.14	-2	846680..847564	+	294	152969319	-	KPN_00762	-	transcriptional regulator LysR
738	 40.56	-2	847570..848496	-	308	152969320	-	KPN_00763	-	transcriptional regulator LysR
739	 40.19	-2	848775..850043	+	422	152969321	-	KPN_00764	-	putative response regulator, membrane protein
740	 67.01	+1	850358..852124	+	588	152969322	-	KPN_00765	-	pyruvate carboxylase subunit B
741	 66.59	+1	852140..853441	+	433	152969323	-	KPN_00766	-	putative oxaloacetate decarboxylase beta chain
742	 65.27	+1	853567..854211	+	214	152969324	-	KPN_00767	-	hypothetical protein
743	 56.44	0	854248..855000	-	250	152969325	gpmA	KPN_00768	-	phosphoglyceromutase
744	 40.00	-2	855057..855161	+	34	152969326	-	KPN_00769	-	hypothetical protein
745	 63.60	0	855292..856335	-	347	152969327	galM	KPN_00770	-	aldose 1-epimerase
746	 59.81	0	856329..857480	-	383	152969328	galK	KPN_00771	-	galactokinase
747	 61.03	0	857480..858526	-	348	152969329	galT	KPN_00772	-	galactose-1-phosphate uridylyltransferase
748	 59.00	0	858536..859552	-	338	152969330	galE	KPN_00773	-	UDP-galactose-4-epimerase
749	 61.85	0	859762..861234	-	490	152969331	modF	KPN_00774	-	putative molybdenum transport ATP-binding protein ModF
750	 61.72	0	861302..862090	-	262	152969332	modE	KPN_00775	-	DNA-binding transcriptional regulator ModE
751	 50.00	-1	862243..862392	+	49	152969333	ybhT	KPN_00776	-	hypothetical protein
752	 60.47	0	862535..863308	+	257	152969334	modA	KPN_00777	-	molybdate transporter periplasmic protein
753	 63.48	0	863308..863997	+	229	152969335	modB	KPN_00778	-	molybdate ABC transporter permease protein
754	 63.28	0	863997..865058	+	353	152969336	modC	KPN_00779	-	molybdate transporter ATP-binding protein
755	 58.36	0	865059..865877	-	272	152969337	ybhA	KPN_00780	-	phosphotransferase
756	 57.87	0	866034..867101	+	355	152969338	ybhE	KPN_00781	-	6-phosphogluconolactonase
757	 51.40	-1	868538..869749	+	403	152969339	-	KPN_00782	-	hypothetical protein
758	 56.46	0	869905..870639	+	244	152969340	-	KPN_00783	-	putative regulatory protein  MerR
759	 45.77	-2	870681..871235	-	184	152969341	-	KPN_00784	-	LuxR transcriptional regulator
760	 49.31	-1	872265..872771	+	168	152969342	-	KPN_00785	-	hypothetical protein
761	 58.71	0	873750..876815	-	1021	152969343	-	KPN_00786	-	putative AcrB, cation/multidrug efflux pump
762	 62.65	0	876816..877811	-	331	152969344	-	KPN_00787	-	hypothetical protein
763	 55.86	0	877956..878066	-	36	152969345	-	KPN_00788	-	hypothetical protein
764	 51.16	-1	878435..878866	+	143	152969346	-	KPN_00789	-	hypothetical protein
765	 59.60	0	878918..881605	+	895	152969347	-	KPN_00790	-	putative cation transport protein
766	 60.51	0	881879..883162	-	427	152969348	ybhC	KPN_00791	-	putative pectinesterase
767	 64.12	+1	883418..884635	+	405	152969349	hutI	KPN_00792	-	imidazolonepropionase
768	 65.94	+1	884632..885588	+	318	152969350	hutG	KPN_00793	-	formimidoylglutamase
769	 60.74	0	885650..886375	+	241	152969351	hutC	KPN_00794	-	histidine utilization repressor
770	 62.58	0	886518..888206	+	562	152969352	-	KPN_00795	-	urocanate hydratase
771	 64.44	+1	888203..889729	+	508	152969353	hutH	KPN_00796	-	histidine ammonia-lyase
772	 60.38	0	889828..891210	+	460	152969354	proY	KPN_00797	-	putative amino acid permease
773	 61.84	0	891914..892390	-	158	152969355	ybhB	KPN_00798	-	putative kinase inhibitor protein
774	 62.33	0	892461..893750	-	429	152969356	bioA	KPN_00799	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
775	 59.39	0	893988..895004	+	338	152969357	bioB	KPN_00800	-	biotin synthesis, sulfur insertion?
776	 67.62	+1	895001..896158	+	385	152969358	bioF	KPN_00801	-	8-amino-7-oxononanoate synthase
777	 67.59	+1	896142..896897	+	251	152969359	bioC	KPN_00802	-	biotin biosynthesis protein BioC
778	 63.76	+1	896890..897612	+	240	152969360	bioD	KPN_00803	-	dithiobiotin synthetase
779	 60.53	0	898988..901009	+	673	152969361	uvrB	KPN_00804	-	excinuclease ABC subunit B
780	 48.33	-1	901139..901258	-	39	152969362	-	KPN_00805	-	putative cation/multidrug efflux pump
781	 61.75	0	901258..902355	-	365	152969363	-	KPN_00806	-	sensor protein BasS/PmrB
782	 57.14	0	902359..903030	-	223	152969364	-	KPN_00807	-	DNA-binding transcriptional regulator BasR
783	 55.45	0	903030..904670	-	546	152969365	-	KPN_00808	-	putative cell division protein
784	 59.82	0	904775..905680	-	301	152969366	ybhK	KPN_00809	-	putative phosphatase/sulfatase
785	 59.70	0	906015..907004	+	329	152969367	moaA	KPN_00810	-	molybdenum cofactor biosynthesis protein A
786	 61.60	0	907028..907540	+	170	152969368	moaB	KPN_00811	-	molybdopterin biosynthesis protein B
787	 58.90	0	907544..908032	+	162	152969369	moaC	KPN_00812	-	molybdenum cofactor biosynthesis protein C
788	 62.65	0	908025..908273	+	82	152969370	moaD	KPN_00813	-	molybdopterin biosynthesis protein
789	 63.58	0	908275..908727	+	150	152969371	moaE	KPN_00814	-	molybdopterin synthase large subunit
790	 56.45	0	908773..909477	+	234	152969372	ybhL	KPN_00815	-	putative transport protein
791	 58.25	0	909658..910596	-	312	152969373	ybhN	KPN_00816	-	putative negative regulator
792	 60.32	0	910620..911864	-	414	152969374	ybhO	KPN_00817	-	cardiolipin synthase 2
793	 59.32	0	911861..912622	-	253	152969375	ybhP	KPN_00818	-	putative DNase
794	 59.82	0	912754..913191	+	145	152969376	ybhQ	KPN_00819	-	hypothetical protein
795	 57.24	0	913252..914397	-	381	152969377	ybhR	KPN_00820	-	ABC transporter membrane protein
796	 59.17	0	914488..915621	-	377	152969378	ybhS	KPN_00821	-	ABC transporter membrane protein
797	 60.98	0	915611..917350	-	579	152969379	ybhF	KPN_00822	-	putative ATP-binding component of a transport system
798	 63.45	0	917343..918338	-	331	152969380	ybhG	KPN_00823	-	hypothetical protein
799	 57.88	0	918338..918997	-	219	152969381	ybiH	KPN_00824	-	putative DNA-binding transcriptional regulator
800	 54.76	0	919071..919994	-	307	152969382	-	KPN_00825	-	transcriptional regulator LysR
801	 50.98	-1	920411..921742	+	443	152969383	-	KPN_00826	-	putative general substrate transporter
802	 60.00	0	921793..922542	+	249	152969384	-	KPN_00827	-	putative short-chain dehydrogenase/reductase SDR
803	 60.28	0	922556..923401	+	281	152969385	-	KPN_00828	-	putative transketolase
804	 60.42	0	923401..924393	+	330	152969386	-	KPN_00829	-	putative transketolase
805	 62.98	0	924608..925963	+	451	152969387	rhlE	KPN_00830	-	ATP-dependent RNA helicase RhlE
806	 59.94	0	926151..928307	+	718	152969388	dinG	KPN_00831	-	ATP-dependent DNA helicase DinG
807	 63.26	0	928337..929305	+	322	152969389	ybiB	KPN_00832	-	hypothetical protein
808	 53.26	0	929415..929675	-	86	152969390	ybiJ	KPN_00833	-	hypothetical protein
809	 64.26	+1	930248..930538	-	96	152969391	ybiM	KPN_00834	-	hypothetical protein
810	 60.33	0	930648..931262	-	204	152969392	-	KPN_00835	-	hypothetical protein
811	 60.44	0	931359..932273	+	304	152969393	ybiN	KPN_00836	-	putative SAM-dependent methyltransferase
812	 59.97	0	932276..934471	-	731	152969394	ybiO	KPN_00837	-	hypothetical protein
813	 57.26	0	934583..935305	-	240	152969395	glnQ	KPN_00838	-	glutamine ABC transporter ATP-binding protein
814	 58.79	0	935302..935961	-	219	152969396	glnP	KPN_00839	-	glutamine ABC transporter permease protein
815	 51.27	-1	936087..936833	-	248	152969397	glnH	KPN_00840	-	glutamine ABC transporter periplasmic protein
816	 54.17	0	937242..937745	-	167	152969398	dps	KPN_00841	-	DNA starvation/stationary phase protection protein Dps
817	 62.95	0	937983..938870	-	295	152969399	ybiF	KPN_00842	-	threonine and homoserine efflux system
818	 51.27	-1	939222..939734	+	170	152969400	ompX	KPN_00843	-	outer membrane protein X
819	 54.78	0	939825..941405	-	526	152969401	ybiP	KPN_00844	-	putative enzyme
820	 58.22	0	942021..942458	+	145	152969402	mntR	KPN_00845	-	manganese transport regulator MntR
821	 59.48	0	942455..943567	+	370	152969403	ybiR	KPN_00846	-	putative transport protein
822	 55.81	0	943788..945113	+	441	152969404	-	KPN_00847	-	glycoside hydrolase family protein 1
823	 58.37	0	945164..945898	+	244	152969405	-	KPN_00848	-	putative transcriptional regulator
824	 57.27	0	946043..946957	-	304	152969406	ybiS	KPN_00849	-	hypothetical protein
825	 62.98	0	947158..947943	-	261	152969407	-	KPN_00850	-	anaerobic C4-dicarboxylate transporter
826	 57.04	0	948146..949714	+	522	152969408	ybiT	KPN_00851	-	putative ATP-binding component of a transport system
827	 59.90	0	949870..952233	-	787	152969409	-	KPN_00852	-	putative alpha-xylosidase
828	 58.83	0	952249..953550	-	433	152969410	-	KPN_00853	-	putative general substrate transporter
829	 64.34	+1	953849..954922	+	357	152969411	-	KPN_00854	-	putative periplasmic binding protein/LacI transcriptional regulator
830	 61.30	0	954919..956184	-	421	152969412	ybiU	KPN_00855	-	hypothetical protein
831	 54.90	0	956324..957139	-	271	152969413	ybiV	KPN_00856	-	hypothetical protein
832	 59.97	0	957316..959748	-	810	152969414	ybiW	KPN_00857	-	putative formate acetyltransferase 3
833	 60.33	0	959753..960652	-	299	152969415	ybiY	KPN_00858	-	putative pyruvate formate lyase activating enzyme
834	 63.23	0	960807..961562	-	251	152969416	moeB	KPN_00859	-	molybdopterin biosynthesis protein MoeB
835	 64.08	+1	961562..962797	-	411	152969417	moeA	KPN_00860	-	molybdopterin biosynthesis protein MoeA
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.