IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
658	 55.66	0	757060..757377	-	105	152969240	ybeB	KPN_00669	-	hypothetical protein
659	 62.22	0	757600..758229	-	209	152969241	phpB	KPN_00670	-	cobC, a phosphohistidine protein
660	 60.22	0	758302..758952	-	216	152969242	nadD	KPN_00671	-	nicotinic acid mononucleotide adenylyltransferase
661	 61.84	0	758945..759979	-	344	152969243	holA	KPN_00672	-	DNA polymerase III subunit delta
662	 56.89	0	759976..760548	-	190	152969244	rlpB	KPN_00673	-	a minor lipoprotein
663	 57.96	0	760581..763163	-	860	152969245	leuS	KPN_00674	-	leucyl-tRNA synthetase
664	 59.26	0	763387..763872	+	161	152969246	ybeL	KPN_00675	-	hypothetical protein
665	 52.40	0	763918..765711	-	597	152969247	-	KPN_00676	-	putative filamentous haemagglutinin
666	 57.09	0	765777..767447	-	556	152969248	-	KPN_00677	-	putative hemolysin activator HlyB
667	 54.41	0	767821..768546	-	241	152969249	gltL	KPN_00678	-	ATP-binding protein of glutamate/aspartate transport system
668	 57.78	0	768546..769220	-	224	152969250	gltK	KPN_00679	-	glutamate/aspartate ABC transporter membrane protein
669	 57.62	0	769220..769960	-	246	152969251	gltJ	KPN_00680	-	glutamate/aspartate ABC transporter membrane protein
670	 53.81	0	770125..771081	-	318	152969252	gltI	KPN_00681	-	glutamate and aspartate transporter subunit
671	 61.08	0	771391..772929	-	512	152969253	lnt	KPN_00682	-	apolipoprotein N-acyltransferase
672	 54.11	0	773055..774002	-	315	152969254	ybeX	KPN_00683	-	putative integral membrane protein
673	 56.75	0	774081..774554	-	157	152969255	ybeY	KPN_00684	-	putative metalloprotease
674	 57.98	0	774551..775597	-	348	152969256	ybeZ	KPN_00685	-	putative ATP-binding protein in pho regulon
675	 57.05	0	775751..777112	-	453	152969257	yleA	KPN_00686	-	hypothetical protein
676	 65.73	+1	777355..778530	+	391	152969258	ubiF	KPN_00687	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
677	 58.02	0	779638..781302	-	554	152969259	asnB	KPN_00695	-	asparagine synthetase B
678	 56.71	0	781581..782333	-	250	152969260	nagD	KPN_00696	-	UMP phosphatase
679	 58.89	0	782450..783670	-	406	152969261	nagC	KPN_00697	-	ROK family transcriptional regulator
680	 57.44	0	783679..784827	-	382	152969262	nagA	KPN_00698	-	N-acetylglucosamine-6-phosphate deacetylase
681	 52.81	0	784941..785741	-	266	152969263	nagB	KPN_00699	-	glucosamine-6-phosphate deaminase
682	 59.82	0	786056..788011	+	651	152969264	nagE	KPN_00700	-	N-acetyl glucosamine specific PTS system components IIABC
683	 56.29	0	788190..789857	+	555	152969265	glnS	KPN_00701	-	glutaminyl-tRNA synthetase
684	 36.25	-2	789911..790219	-	102	152969266	metH	KPN_00702	-	B12-dependent methionine synthase
685	 54.91	0	790293..791696	+	467	152969267	ybfM	KPN_00703	-	hypothetical protein
686	 52.85	0	791744..792076	+	110	152969268	ybfN	KPN_00704	-	hypothetical protein
687	 61.75	0	792073..792642	-	189	152969269	citA	KPN_00705	-	putative citrate utilization protein A
688	 52.32	0	792692..793144	-	150	152969270	fur	KPN_00706	-	ferric uptake regulator
689	 55.37	0	793436..793966	-	176	152969271	fldA	KPN_00707	-	flavodoxin FldA
690	 54.08	0	794118..794411	-	97	152969272	ybfE	KPN_00708	-	LexA regulated protein
691	 63.82	+1	794545..795318	-	257	152969273	ybfF	KPN_00709	-	hypothetical protein
692	 54.46	0	795502..796050	+	182	152969274	seqA	KPN_00710	-	replication initiation regulator SeqA
693	 60.21	0	796083..797723	+	546	152969275	pgm	KPN_00711	-	phosphoglucomutase
694	 57.32	0	797820..798215	+	131	152969276	ydgI	KPN_00712	-	putative arginine/ornithine antiporter
695	 60.77	0	798197..798874	-	225	152969277	kdpE	KPN_00713	-	regulator of kdp operon (transcriptional effector)
696	 65.22	+1	798871..801558	-	895	152969278	kdpD	KPN_00714	-	sensor protein KdpD
697	 62.85	0	801559..802134	-	191	152969279	kdpC	KPN_00715	-	potassium-transporting ATPase subunit C
698	 63.35	0	802145..804193	-	682	152969280	kdpB	KPN_00716	-	potassium-transporting ATPase subunit B
699	 62.56	0	804214..805893	-	559	152969281	kdpA	KPN_00717	-	potassium-transporting ATPase subunit A
700	 57.14	0	806289..806498	+	69	152969282	ybfA	KPN_00718	-	hypothetical protein
701	 62.72	0	806682..808124	+	480	152969283	phrB	KPN_00719	-	deoxyribodipyrimidine photolyase
702	 60.85	0	808096..809574	-	492	152969284	ybgH	KPN_00720	-	putative transport protein
703	 60.89	0	809842..810585	+	247	152969285	ybgI	KPN_00721	-	putative hydrolase-oxidase
704	 62.40	0	810600..811256	+	218	152969286	ybgJ	KPN_00722	-	putative carboxylase
705	 60.56	0	811250..812182	+	310	152969287	ybgK	KPN_00723	-	putative carboxylase
706	 64.38	+1	812172..812915	+	247	152969288	ybgL	KPN_00724	-	hypothetical protein
707	 58.64	0	814721..815368	+	215	152969289	-	KPN_00725	-	pyrrolidone-carboxylate peptidase
708	 58.96	0	815384..816175	+	263	152969290	nei	KPN_00726	-	endonuclease VIII
709	 54.52	0	816266..817549	-	427	152969291	gltA	KPN_00727	-	type II citrate synthase
710	 51.81	-1	818319..818594	+	91	152969292	sdhC	KPN_00728	-	hypothetical protein
711	 52.87	0	818588..818935	+	115	152969293	sdhD	KPN_00729	-	succinate dehydrogenase cytochrome b556 small membrane subunit
712	 59.82	0	818935..820701	+	588	152969294	sdhA	KPN_00730	-	succinate dehydrogenase flavoprotein subunit
713	 55.65	0	820717..821433	+	238	152969295	sdhB	KPN_00731	-	succinate dehydrogenase iron-sulfur subunit
714	 57.91	0	821815..824622	+	935	152969296	sucA	KPN_00732	-	alpha-ketoglutarate decarboxylase
715	 59.49	0	824637..825863	+	408	152969297	sucB	KPN_00733	-	dihydrolipoamide acetyltransferase
716	 58.01	0	825967..827133	+	388	152969298	sucC	KPN_00734	-	succinyl-CoA synthetase subunit beta
717	 57.93	0	827133..828002	+	289	152969299	sucD	KPN_00735	-	succinyl-CoA synthetase subunit alpha
718	 56.23	0	828824..830395	+	523	152969300	cydA	KPN_00736	-	cytochrome d terminal oxidase, polypeptide subunit I
719	 58.95	0	830411..831550	+	379	152969301	cydB	KPN_00737	-	cytochrome d terminal oxidase polypeptide subunit II
720	 52.14	0	831566..831682	+	38	152969302	ribH	KPN_00738	-	riboflavin synthase subunit beta
721	 54.30	0	831682..831972	+	96	152969303	ybgE	KPN_00739	-	hypothetical protein
722	 51.85	-1	832122..832526	+	134	152969304	ybgC	KPN_00740	-	acyl-CoA thioester hydrolase YbgC
723	 54.24	0	832532..833215	+	227	152969305	tolQ	KPN_00741	-	colicin uptake protein TolQ
724	 55.48	0	833219..833647	+	142	152969306	tolR	KPN_00742	-	colicin uptake protein TolR
725	 59.06	0	833747..835060	+	437	152969307	tolA	KPN_00743	-	cell envelope integrity inner membrane protein TolA
726	 58.79	0	835226..836482	+	418	152969308	tolB	KPN_00744	-	translocation protein TolB
727	 52.95	0	836517..837041	+	174	152969309	pal	KPN_00745	-	peptidoglycan-associated outer membrane lipoprotein
728	 54.47	0	837051..837845	+	264	152969310	ybgF	KPN_00746	-	hypothetical protein
729	 59.98	0	839642..840688	+	348	152969311	nadA	KPN_00754	-	quinolinate synthetase
730	 55.69	0	840724..841443	+	239	152969312	pnuC	KPN_00755	-	nucleoside/purine/pyrimidine transport protein
731	 61.06	0	841440..842384	-	314	152969313	ybgR	KPN_00756	-	zinc transporter ZitB
732	 57.38	0	842502..842867	-	121	152969314	ybgS	KPN_00757	-	putative homeobox protein
733	 58.59	0	843182..844234	+	350	152969315	aroG	KPN_00758	-	phospho-2-dehydro-3-deoxyheptonate aldolase
734	 55.16	0	844918..845421	-	167	152969316	-	KPN_00759	-	putative IS1 transposase
735	 53.62	0	845340..845615	-	91	152969317	-	KPN_00760	-	putative transposase
736	 40.43	-2	845712..846557	-	281	152969318	-	KPN_00761	-	fumarate hydratase
737	 35.14	-2	846680..847564	+	294	152969319	-	KPN_00762	-	transcriptional regulator LysR
738	 40.56	-2	847570..848496	-	308	152969320	-	KPN_00763	-	transcriptional regulator LysR
739	 40.19	-2	848775..850043	+	422	152969321	-	KPN_00764	-	putative response regulator, membrane protein
740	 67.01	+1	850358..852124	+	588	152969322	-	KPN_00765	-	pyruvate carboxylase subunit B
741	 66.59	+1	852140..853441	+	433	152969323	-	KPN_00766	-	putative oxaloacetate decarboxylase beta chain
742	 65.27	+1	853567..854211	+	214	152969324	-	KPN_00767	-	hypothetical protein
743	 56.44	0	854248..855000	-	250	152969325	gpmA	KPN_00768	-	phosphoglyceromutase
744	 40.00	-2	855057..855161	+	34	152969326	-	KPN_00769	-	hypothetical protein
745	 63.60	0	855292..856335	-	347	152969327	galM	KPN_00770	-	aldose 1-epimerase
746	 59.81	0	856329..857480	-	383	152969328	galK	KPN_00771	-	galactokinase
747	 61.03	0	857480..858526	-	348	152969329	galT	KPN_00772	-	galactose-1-phosphate uridylyltransferase
748	 59.00	0	858536..859552	-	338	152969330	galE	KPN_00773	-	UDP-galactose-4-epimerase
749	 61.85	0	859762..861234	-	490	152969331	modF	KPN_00774	-	putative molybdenum transport ATP-binding protein ModF
750	 61.72	0	861302..862090	-	262	152969332	modE	KPN_00775	-	DNA-binding transcriptional regulator ModE
751	 50.00	-1	862243..862392	+	49	152969333	ybhT	KPN_00776	-	hypothetical protein
752	 60.47	0	862535..863308	+	257	152969334	modA	KPN_00777	-	molybdate transporter periplasmic protein
753	 63.48	0	863308..863997	+	229	152969335	modB	KPN_00778	-	molybdate ABC transporter permease protein
754	 63.28	0	863997..865058	+	353	152969336	modC	KPN_00779	-	molybdate transporter ATP-binding protein
755	 58.36	0	865059..865877	-	272	152969337	ybhA	KPN_00780	-	phosphotransferase
756	 57.87	0	866034..867101	+	355	152969338	ybhE	KPN_00781	-	6-phosphogluconolactonase
757	 51.40	-1	868538..869749	+	403	152969339	-	KPN_00782	-	hypothetical protein
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.