IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
601	 62.19	0	693667..695274	+	535	152969183	entE	KPN_00612	-	enterobactin synthase subunit E
602	 60.56	0	695288..696139	+	283	152969184	entB	KPN_00613	-	2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase
603	 64.42	+1	696139..696894	+	251	152969185	entA	KPN_00614	-	2,3-dihydroxybenzoate-2,3-dehydrogenase
604	 66.43	+1	696895..697308	+	137	152969186	ybdB	KPN_00615	-	hypothetical protein
605	 60.87	0	698575..700680	+	701	152969187	cstA	KPN_00616	-	carbon starvation protein
606	 56.06	0	700773..700970	+	65	152969188	-	KPN_00617	-	hypothetical protein
607	 54.07	0	700967..701371	-	134	152969189	-	KPN_00618	-	putative transcriptional regulators
608	 45.54	-2	701346..701648	-	100	152969190	-	KPN_00619	-	hypothetical protein
609	 63.31	0	701832..702575	-	247	152969191	-	KPN_00620	-	putative short-chain alcohol dehydrogenase
610	 65.11	+1	702633..703721	-	362	152969192	ybdH	KPN_00621	-	hypothetical protein
611	 62.74	0	703885..705387	+	500	152969193	-	KPN_00622	-	putative ABC transporter
612	 62.23	0	705459..706382	+	307	152969194	-	KPN_00623	-	putative ABC transporter, permease protein
613	 61.22	0	706403..707467	+	354	152969195	-	KPN_00624	-	putative periplasmic binding protein/LacI transcriptional regulator
614	 62.27	0	707605..708810	+	401	152969196	-	KPN_00625	-	hypothetical protein
615	 63.17	0	709024..710223	-	399	152969197	-	KPN_00626	-	methylthioribose kinase
616	 65.89	+1	710325..711353	+	342	152969198	-	KPN_00627	-	methyltransferase domain-containing protein
617	 64.93	+1	711414..712682	-	422	152969199	-	KPN_00628	-	putative 3-phytase precursor
618	 61.44	0	712708..714066	-	452	152969200	-	KPN_00629	-	hypothetical protein
619	 64.57	+1	714177..714986	-	269	152969201	-	KPN_00630	-	putative inositol monophosphatase
620	 63.78	+1	715108..716148	-	346	152969202	-	KPN_00631	-	putative periplasmic binding protein/LacI transcriptional regulator
621	 63.28	0	716204..717442	-	412	152969203	-	KPN_00632	-	putative cytosine deaminase and related metal-dependent hydrolases
622	 63.74	+1	718671..719933	-	420	152969204	-	KPN_00633	-	cytosine permease
623	 61.74	0	720385..720993	+	202	152969205	-	KPN_00634	-	hypothetical protein
624	 66.93	+1	721006..722502	+	498	152969206	-	KPN_00635	-	putative carbohydrate kinase, FGGY
625	 64.04	+1	722499..723527	+	342	152969207	-	KPN_00636	-	putative D-3-phosphoglycerate dehydrogenase
626	 65.71	+1	723570..724511	-	313	152969208	-	KPN_00637	-	putative kinase
627	 65.07	+1	724523..725527	-	334	152969209	-	KPN_00638	-	putative inner-membrane translocator
628	 65.76	+1	725524..726513	-	329	152969210	-	KPN_00639	-	sugar ABC transporter membrane protein
629	 65.83	+1	726510..728060	-	516	152969211	-	KPN_00640	-	putative ABC-type sugar transport system, ATPase component
630	 55.45	0	728057..729037	-	326	152969212	-	KPN_00641	-	sugar ABC transporter periplasmic substrate-binding protein
631	 64.29	+1	729446..731755	+	769	152969213	-	KPN_00642	-	biotin sulfoxide reductase
632	 58.56	0	731863..732405	-	180	152969214	-	KPN_00643	-	putative acireductone dioxygenase, ARD
633	 57.68	0	732402..733091	-	229	152969215	-	KPN_00644	-	phosphoglycolate phosphatase
634	 63.22	0	733218..734378	+	386	152969216	ybdL	KPN_00645	-	putative aminotransferase
635	 59.62	0	734379..735017	-	212	152969217	ybdM	KPN_00646	-	hypothetical protein
636	 55.37	0	734990..736219	-	409	152969218	ybdN	KPN_00647	-	hypothetical protein
637	 46.52	-1	736324..737256	-	310	152969219	ybdO	KPN_00648	-	putative transcriptional regulator (LysR familiy)
638	 53.95	0	737437..738057	-	206	152969220	dsbG	KPN_00649	-	disulfide isomerase, thiol-disulphide oxidase, periplasmic
639	 52.84	0	738598..739161	+	187	152969221	ahpC	KPN_00650	-	alkyl hydroperoxide reductase subunit C
640	 58.37	0	739349..740914	+	521	152969222	ahpF	KPN_00651	-	alkyl hydroperoxide reductase subunit, FAD/NAD(P)-binding protein
641	 56.41	0	740991..741419	-	142	152969223	ybdQ	KPN_00652	-	hypothetical protein
642	 61.23	0	741607..742029	-	140	152969224	rnk	KPN_00653	-	nucleoside diphosphate kinase regulator
643	 57.13	0	743086..744459	-	457	152969225	dcuC	KPN_00654	-	C4-dicarboxylate transporter DcuC
644	 52.11	0	744747..745316	+	189	152969226	crcA	KPN_00655	-	palmitoyl transferase for Lipid A
645	 44.76	-2	745511..745720	+	69	152969227	cspE	KPN_00656	-	cold shock protein CspE
646	 58.73	0	745788..746102	-	104	152969228	ccrB	KPN_00657	-	camphor resistance protein CrcB
647	 62.36	0	746330..747049	+	239	152969229	ybeM	KPN_00658	-	NAD(P)-binding amidase-type enzyme
648	 48.31	-1	747292..747498	+	68	152969230	tatE	KPN_00659	-	twin arginine translocase protein E
649	 57.25	0	747689..748654	-	321	152969231	lipA	KPN_00660	-	lipoyl synthase
650	 58.31	0	748835..749731	-	298	152969232	ybeF	KPN_00661	-	putative DNA-binding transcriptional regulator
651	 59.41	0	749925..750503	-	192	152969233	lipB	KPN_00662	-	lipoyltransferase
652	 49.24	-1	750674..750937	-	87	152969234	ybeD	KPN_00663	-	hypothetical protein
653	 55.50	0	751050..752249	-	399	152969235	dacA	KPN_00664	-	D-alanyl-D-alanine carboxypeptidase fraction A
654	 63.97	+1	752388..753536	-	382	152969236	rlpA	KPN_00665	-	rare lipoprotein A
655	 57.14	0	753548..754660	-	370	152969237	mrdB	KPN_00666	-	cell wall shape-determining protein
656	 58.36	0	754660..756561	-	633	152969238	mrdA	KPN_00667	-	penicillin-binding protein 2
657	 58.97	0	756589..757056	-	155	152969239	ybeA	KPN_00668	-	SPOUT methyltransferase superfamily protein
658	 55.66	0	757060..757377	-	105	152969240	ybeB	KPN_00669	-	hypothetical protein
659	 62.22	0	757600..758229	-	209	152969241	phpB	KPN_00670	-	cobC, a phosphohistidine protein
660	 60.22	0	758302..758952	-	216	152969242	nadD	KPN_00671	-	nicotinic acid mononucleotide adenylyltransferase
661	 61.84	0	758945..759979	-	344	152969243	holA	KPN_00672	-	DNA polymerase III subunit delta
662	 56.89	0	759976..760548	-	190	152969244	rlpB	KPN_00673	-	a minor lipoprotein
663	 57.96	0	760581..763163	-	860	152969245	leuS	KPN_00674	-	leucyl-tRNA synthetase
664	 59.26	0	763387..763872	+	161	152969246	ybeL	KPN_00675	-	hypothetical protein
665	 52.40	0	763918..765711	-	597	152969247	-	KPN_00676	-	putative filamentous haemagglutinin
666	 57.09	0	765777..767447	-	556	152969248	-	KPN_00677	-	putative hemolysin activator HlyB
667	 54.41	0	767821..768546	-	241	152969249	gltL	KPN_00678	-	ATP-binding protein of glutamate/aspartate transport system
668	 57.78	0	768546..769220	-	224	152969250	gltK	KPN_00679	-	glutamate/aspartate ABC transporter membrane protein
669	 57.62	0	769220..769960	-	246	152969251	gltJ	KPN_00680	-	glutamate/aspartate ABC transporter membrane protein
670	 53.81	0	770125..771081	-	318	152969252	gltI	KPN_00681	-	glutamate and aspartate transporter subunit
671	 61.08	0	771391..772929	-	512	152969253	lnt	KPN_00682	-	apolipoprotein N-acyltransferase
672	 54.11	0	773055..774002	-	315	152969254	ybeX	KPN_00683	-	putative integral membrane protein
673	 56.75	0	774081..774554	-	157	152969255	ybeY	KPN_00684	-	putative metalloprotease
674	 57.98	0	774551..775597	-	348	152969256	ybeZ	KPN_00685	-	putative ATP-binding protein in pho regulon
675	 57.05	0	775751..777112	-	453	152969257	yleA	KPN_00686	-	hypothetical protein
676	 65.73	+1	777355..778530	+	391	152969258	ubiF	KPN_00687	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
677	 58.02	0	779638..781302	-	554	152969259	asnB	KPN_00695	-	asparagine synthetase B
678	 56.71	0	781581..782333	-	250	152969260	nagD	KPN_00696	-	UMP phosphatase
679	 58.89	0	782450..783670	-	406	152969261	nagC	KPN_00697	-	ROK family transcriptional regulator
680	 57.44	0	783679..784827	-	382	152969262	nagA	KPN_00698	-	N-acetylglucosamine-6-phosphate deacetylase
681	 52.81	0	784941..785741	-	266	152969263	nagB	KPN_00699	-	glucosamine-6-phosphate deaminase
682	 59.82	0	786056..788011	+	651	152969264	nagE	KPN_00700	-	N-acetyl glucosamine specific PTS system components IIABC
683	 56.29	0	788190..789857	+	555	152969265	glnS	KPN_00701	-	glutaminyl-tRNA synthetase
684	 36.25	-2	789911..790219	-	102	152969266	metH	KPN_00702	-	B12-dependent methionine synthase
685	 54.91	0	790293..791696	+	467	152969267	ybfM	KPN_00703	-	hypothetical protein
686	 52.85	0	791744..792076	+	110	152969268	ybfN	KPN_00704	-	hypothetical protein
687	 61.75	0	792073..792642	-	189	152969269	citA	KPN_00705	-	putative citrate utilization protein A
688	 52.32	0	792692..793144	-	150	152969270	fur	KPN_00706	-	ferric uptake regulator
689	 55.37	0	793436..793966	-	176	152969271	fldA	KPN_00707	-	flavodoxin FldA
690	 54.08	0	794118..794411	-	97	152969272	ybfE	KPN_00708	-	LexA regulated protein
691	 63.82	+1	794545..795318	-	257	152969273	ybfF	KPN_00709	-	hypothetical protein
692	 54.46	0	795502..796050	+	182	152969274	seqA	KPN_00710	-	replication initiation regulator SeqA
693	 60.21	0	796083..797723	+	546	152969275	pgm	KPN_00711	-	phosphoglucomutase
694	 57.32	0	797820..798215	+	131	152969276	ydgI	KPN_00712	-	putative arginine/ornithine antiporter
695	 60.77	0	798197..798874	-	225	152969277	kdpE	KPN_00713	-	regulator of kdp operon (transcriptional effector)
696	 65.22	+1	798871..801558	-	895	152969278	kdpD	KPN_00714	-	sensor protein KdpD
697	 62.85	0	801559..802134	-	191	152969279	kdpC	KPN_00715	-	potassium-transporting ATPase subunit C
698	 63.35	0	802145..804193	-	682	152969280	kdpB	KPN_00716	-	potassium-transporting ATPase subunit B
699	 62.56	0	804214..805893	-	559	152969281	kdpA	KPN_00717	-	potassium-transporting ATPase subunit A
700	 57.14	0	806289..806498	+	69	152969282	ybfA	KPN_00718	-	hypothetical protein
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.