IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
548	 62.65	0	625066..627780	+	904	152969130	-	KPN_00559	-	Mg2+ transport ATPase, P-type 1
549	 66.48	+1	627833..628912	+	359	152969131	-	KPN_00560	-	putative secretion protein HlyD
550	 65.92	+1	628926..632018	+	1030	152969132	-	KPN_00561	-	putative acridine efflux pump
551	 61.67	0	632367..633086	-	239	152969133	-	KPN_00562	-	hypothetical protein
552	 62.28	0	633134..634249	-	371	152969134	-	KPN_00563	-	carboxylate-amine ligase
553	 61.93	0	634576..636243	+	555	152969135	-	KPN_00564	-	extracellular solute-binding family protein 5
554	 62.89	0	636262..637215	+	317	152969136	-	KPN_00565	-	putative binding-protein-dependent transport systems inner membrane component
555	 63.53	0	637218..638111	+	297	152969137	-	KPN_00566	-	putative binding-protein-dependent transport systems inner membrane component
556	 64.64	+1	638115..639152	+	345	152969138	-	KPN_00567	-	putative ABC transporter
557	 67.66	+1	639142..640152	+	336	152969139	-	KPN_00568	-	putative ABC transport system ATP-binding protein
558	 64.70	+1	640250..641518	+	422	152969140	-	KPN_00569	-	putative amidohydrolase
559	 65.39	+1	642655..643989	+	444	152969141	-	KPN_00570	-	aminotransferase regulator domain-containing protein
560	 63.59	0	643986..645545	-	519	152969142	-	KPN_00571	-	GntR transcriptional regulator
561	 54.87	0	645712..646542	+	276	152969143	-	KPN_00572	-	glutamine ABC transporter periplasmic-binding protein
562	 61.06	0	646590..647231	+	213	152969144	-	KPN_00573	-	putative binding-protein-dependent transport systems inner membrane component
563	 50.30	-1	647246..647911	+	221	152969145	-	KPN_00574	-	putative binding-protein-dependent transport systems inner membrane component
564	 58.66	0	647904..648665	+	253	152969146	-	KPN_00575	-	putative ABC transporter
565	 63.53	0	648719..649483	-	254	152969147	-	KPN_00576	-	putative oxidoreductase
566	 63.83	+1	649664..651001	+	445	152969148	-	KPN_00577	-	hypothetical protein
567	 63.40	0	651248..651952	-	234	152969149	-	KPN_00578	-	putative ATP-binding component of a transport system
568	 67.14	+1	651939..652775	-	278	152969150	-	KPN_00579	-	putative ABC transporter
569	 68.59	+1	652768..653601	-	277	152969151	-	KPN_00580	-	putative ABC transport system permease protein
570	 64.52	+1	653601..654623	-	340	152969152	-	KPN_00581	-	putative ABC transport system permease protein
571	 60.04	0	654743..656311	-	522	152969153	-	KPN_00582	-	putative ABC transport system periplasmic binding protein
572	 63.82	+1	656511..657212	+	233	152969154	-	KPN_00583	-	putative GCN5-related N-acetyltransferase
573	 63.24	0	657333..658997	-	554	152969155	-	KPN_00584	-	choline dehydrogenase
574	 62.57	0	659011..660474	-	487	152969156	-	KPN_00585	-	betaine aldehyde dehydrogenase
575	 62.21	0	660497..661102	-	201	152969157	-	KPN_00586	-	transcriptional regulator BetI
576	 59.83	0	661213..663246	+	677	152969158	-	KPN_00587	-	choline transport protein BetT
577	 53.46	0	663963..665219	+	418	152969159	-	KPN_00588	-	putative transport
578	 66.78	+1	665216..666109	-	297	152969160	-	KPN_00589	-	transcriptional regulator LysR
579	 62.87	0	666364..666969	+	201	152969161	-	KPN_00590	-	putative S-transferase
580	 59.80	0	667028..668527	-	499	152969162	-	KPN_00591	-	putative carbohydrate kinase
581	 56.90	0	668542..669933	-	463	152969163	-	KPN_00592	-	putative L-fucose isomerase, C-terminal
582	 59.41	0	669995..670945	-	316	152969164	-	KPN_00593	-	putative transketolase C-terminal section
583	 56.80	0	670938..671768	-	276	152969165	-	KPN_00594	-	putative transketolase
584	 56.80	0	672038..673030	+	330	152969166	-	KPN_00595	-	putative sugar-binding region
585	 55.24	0	673027..673989	-	320	152969167	-	KPN_00596	-	putative transposase, YhgA-like protein
586	 56.20	0	674145..675233	-	362	152969168	-	KPN_00597	-	putative inner-membrane translocator
587	 55.99	0	675235..676761	-	508	152969169	-	KPN_00598	-	putative ABC transporter
588	 58.66	0	676761..677372	-	203	152969170	-	KPN_00599	-	hypothetical protein
589	 54.26	0	677380..678282	-	300	152969171	-	KPN_00600	-	D-ribose periplasmic binding protein
590	 63.33	0	678439..679098	-	219	152969172	entD	KPN_00601	-	enterochelin synthetase, component D
591	 59.89	0	679165..681393	-	742	152969173	fepA	KPN_00602	-	outer membrane receptor FepA
592	 67.54	+1	681713..682861	+	382	152969174	fes	KPN_00603	-	enterobactin/ferric enterobactin esterase
593	 62.25	0	682889..683092	+	67	152969175	ychP	KPN_00604	-	invasin-like protein
594	 68.02	+1	683082..686984	+	1300	152969176	entF	KPN_00605	-	enterobactin synthase subunit F
595	 64.78	+1	687049..687843	-	264	152969177	fepC	KPN_00606	-	iron-enterobactin transporter ATP-binding protein
596	 66.87	+1	687840..688832	-	330	152969178	fepG	KPN_00607	-	iron-enterobactin transporter permease
597	 68.55	+1	688829..689836	-	335	152969179	fepD	KPN_00608	-	iron-enterobactin transporter membrane protein
598	 66.75	+1	689949..691190	+	413	152969180	ybdA	KPN_00609	-	enterobactin exporter EntS
599	 63.65	0	691334..692293	-	319	152969181	fepB	KPN_00610	-	iron-enterobactin transporter periplasmic binding protein
600	 65.22	+1	692482..693657	+	391	152969182	entC	KPN_00611	-	isochorismate synthase
601	 62.19	0	693667..695274	+	535	152969183	entE	KPN_00612	-	enterobactin synthase subunit E
602	 60.56	0	695288..696139	+	283	152969184	entB	KPN_00613	-	2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase
603	 64.42	+1	696139..696894	+	251	152969185	entA	KPN_00614	-	2,3-dihydroxybenzoate-2,3-dehydrogenase
604	 66.43	+1	696895..697308	+	137	152969186	ybdB	KPN_00615	-	hypothetical protein
605	 60.87	0	698575..700680	+	701	152969187	cstA	KPN_00616	-	carbon starvation protein
606	 56.06	0	700773..700970	+	65	152969188	-	KPN_00617	-	hypothetical protein
607	 54.07	0	700967..701371	-	134	152969189	-	KPN_00618	-	putative transcriptional regulators
608	 45.54	-2	701346..701648	-	100	152969190	-	KPN_00619	-	hypothetical protein
609	 63.31	0	701832..702575	-	247	152969191	-	KPN_00620	-	putative short-chain alcohol dehydrogenase
610	 65.11	+1	702633..703721	-	362	152969192	ybdH	KPN_00621	-	hypothetical protein
611	 62.74	0	703885..705387	+	500	152969193	-	KPN_00622	-	putative ABC transporter
612	 62.23	0	705459..706382	+	307	152969194	-	KPN_00623	-	putative ABC transporter, permease protein
613	 61.22	0	706403..707467	+	354	152969195	-	KPN_00624	-	putative periplasmic binding protein/LacI transcriptional regulator
614	 62.27	0	707605..708810	+	401	152969196	-	KPN_00625	-	hypothetical protein
615	 63.17	0	709024..710223	-	399	152969197	-	KPN_00626	-	methylthioribose kinase
616	 65.89	+1	710325..711353	+	342	152969198	-	KPN_00627	-	methyltransferase domain-containing protein
617	 64.93	+1	711414..712682	-	422	152969199	-	KPN_00628	-	putative 3-phytase precursor
618	 61.44	0	712708..714066	-	452	152969200	-	KPN_00629	-	hypothetical protein
619	 64.57	+1	714177..714986	-	269	152969201	-	KPN_00630	-	putative inositol monophosphatase
620	 63.78	+1	715108..716148	-	346	152969202	-	KPN_00631	-	putative periplasmic binding protein/LacI transcriptional regulator
621	 63.28	0	716204..717442	-	412	152969203	-	KPN_00632	-	putative cytosine deaminase and related metal-dependent hydrolases
622	 63.74	+1	718671..719933	-	420	152969204	-	KPN_00633	-	cytosine permease
623	 61.74	0	720385..720993	+	202	152969205	-	KPN_00634	-	hypothetical protein
624	 66.93	+1	721006..722502	+	498	152969206	-	KPN_00635	-	putative carbohydrate kinase, FGGY
625	 64.04	+1	722499..723527	+	342	152969207	-	KPN_00636	-	putative D-3-phosphoglycerate dehydrogenase
626	 65.71	+1	723570..724511	-	313	152969208	-	KPN_00637	-	putative kinase
627	 65.07	+1	724523..725527	-	334	152969209	-	KPN_00638	-	putative inner-membrane translocator
628	 65.76	+1	725524..726513	-	329	152969210	-	KPN_00639	-	sugar ABC transporter membrane protein
629	 65.83	+1	726510..728060	-	516	152969211	-	KPN_00640	-	putative ABC-type sugar transport system, ATPase component
630	 55.45	0	728057..729037	-	326	152969212	-	KPN_00641	-	sugar ABC transporter periplasmic substrate-binding protein
631	 64.29	+1	729446..731755	+	769	152969213	-	KPN_00642	-	biotin sulfoxide reductase
632	 58.56	0	731863..732405	-	180	152969214	-	KPN_00643	-	putative acireductone dioxygenase, ARD
633	 57.68	0	732402..733091	-	229	152969215	-	KPN_00644	-	phosphoglycolate phosphatase
634	 63.22	0	733218..734378	+	386	152969216	ybdL	KPN_00645	-	putative aminotransferase
635	 59.62	0	734379..735017	-	212	152969217	ybdM	KPN_00646	-	hypothetical protein
636	 55.37	0	734990..736219	-	409	152969218	ybdN	KPN_00647	-	hypothetical protein
637	 46.52	-1	736324..737256	-	310	152969219	ybdO	KPN_00648	-	putative transcriptional regulator (LysR familiy)
638	 53.95	0	737437..738057	-	206	152969220	dsbG	KPN_00649	-	disulfide isomerase, thiol-disulphide oxidase, periplasmic
639	 52.84	0	738598..739161	+	187	152969221	ahpC	KPN_00650	-	alkyl hydroperoxide reductase subunit C
640	 58.37	0	739349..740914	+	521	152969222	ahpF	KPN_00651	-	alkyl hydroperoxide reductase subunit, FAD/NAD(P)-binding protein
641	 56.41	0	740991..741419	-	142	152969223	ybdQ	KPN_00652	-	hypothetical protein
642	 61.23	0	741607..742029	-	140	152969224	rnk	KPN_00653	-	nucleoside diphosphate kinase regulator
643	 57.13	0	743086..744459	-	457	152969225	dcuC	KPN_00654	-	C4-dicarboxylate transporter DcuC
644	 52.11	0	744747..745316	+	189	152969226	crcA	KPN_00655	-	palmitoyl transferase for Lipid A
645	 44.76	-2	745511..745720	+	69	152969227	cspE	KPN_00656	-	cold shock protein CspE
646	 58.73	0	745788..746102	-	104	152969228	ccrB	KPN_00657	-	camphor resistance protein CrcB
647	 62.36	0	746330..747049	+	239	152969229	ybeM	KPN_00658	-	NAD(P)-binding amidase-type enzyme
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.