IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
469	 51.13	-1	527146..527454	-	102	152969051	ybjC	KPN_00479	-	hypothetical protein
470	 58.09	0	527592..528314	-	240	152969052	ybbF	KPN_00480	-	UDP-2,3-diacylglucosamine hydrolase
471	 52.73	0	528318..528848	-	176	152969053	ppiB	KPN_00481	-	peptidyl-prolyl cis-trans isomerase B (rotamase B)
472	 58.44	0	528988..530373	+	461	152969054	cysS	KPN_00482	-	cysteinyl-tRNA synthetase
473	 60.09	0	530419..530631	-	70	152969055	ybcJ	KPN_00483	-	hypothetical protein
474	 59.86	0	530633..531499	-	288	152969056	folD	KPN_00484	-	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase
475	 55.11	0	531637..531861	+	74	152969057	-	KPN_00485	-	hypothetical protein
476	 49.66	-1	532378..532671	+	97	152969058	-	KPN_00487	-	hypothetical protein
477	 50.75	-1	533067..533468	+	133	152969059	-	KPN_00488	-	hypothetical protein
478	 61.61	0	534228..535532	+	434	152969060	-	KPN_00489	-	putative citrate synthase
479	 50.08	-1	535868..536530	-	220	152969061	-	KPN_00490	-	two-component regulatory system response regulator
480	 56.30	0	537022..537561	+	179	152969062	-	KPN_00491	-	putative fimbrial-like protein
481	 57.33	0	537620..538315	+	231	152969063	-	KPN_00492	-	pilin chaperone
482	 62.03	0	538326..540761	+	811	152969064	-	KPN_00493	-	putative outer membrane protein
483	 55.80	0	540841..541788	+	315	152969065	-	KPN_00494	-	putative fimbrial biogenesis outer membrane usher protein
484	 49.94	-1	541811..542677	-	288	152969066	-	KPN_00495	-	GNAT family acetyltransferase
485	 59.28	0	543188..544108	+	306	152969067	-	KPN_00496	-	lipid A biosynthesis lauroyl acyltransferase
486	 53.85	0	544209..544481	+	90	152969068	-	KPN_00497	-	hypothetical protein
487	 55.64	0	544775..546343	+	522	152969069	cadC	KPN_00498	-	DNA-binding transcriptional activator CadC
488	 54.61	0	546709..548043	+	444	152969070	cadB	KPN_00499	-	lysine/cadaverine antiporter
489	 53.12	0	548126..550273	+	715	152969071	cadA	KPN_00500	-	lysine decarboxylase 1
490	 62.13	0	550333..551808	+	491	152969072	yjdL	KPN_00501	-	di-/tripeptide transport protein
491	 56.79	0	552140..553657	+	505	152969073	lysS	KPN_00502	-	lysyl-tRNA synthetase
492	 57.28	0	553734..554159	-	141	152969074	-	KPN_00503	-	hypothetical protein
493	 62.98	0	554731..555651	+	306	152969075	-	KPN_00504	-	hypothetical protein
494	 62.06	0	555648..556820	+	390	152969076	-	KPN_00505	-	putative oxidoreductase
495	 64.83	+1	556830..557861	+	343	152969077	-	KPN_00506	-	putative oxidoreductase
496	 66.07	+1	558667..559674	-	335	152969078	-	KPN_00507	-	putative oxidoreductase
497	 65.59	+1	559776..560795	+	339	152969079	-	KPN_00508	-	hypothetical protein
498	 55.30	0	561225..562148	+	307	152969080	-	KPN_00509	-	putative periplasmic binding protein
499	 56.36	0	562181..563665	+	494	152969081	-	KPN_00510	-	putative ABC transporter
500	 59.14	0	563685..564707	+	340	152969082	-	KPN_00511	-	putative inner-membrane translocator
501	 62.99	0	565547..566551	-	334	152969083	-	KPN_00512	-	LacI transcriptional regulator
502	 65.60	+1	566581..567981	-	466	152969084	-	KPN_00513	-	beta-fructofuranosidase; sucrose-6-phosphate hydrolase
503	 61.27	0	567981..569351	-	456	152969085	-	KPN_00514	-	sucrose-specific enzyme II
504	 60.14	0	569456..570973	-	505	152969086	-	KPN_00515	-	sucrose porin
505	 67.75	+1	571138..572061	-	307	152969087	-	KPN_00516	-	aminoimidazole riboside kinase
506	 60.89	0	573421..574563	+	380	152969088	-	KPN_00517	-	putative secretion protein HlyD
507	 65.29	+1	574604..575401	-	265	152969089	-	KPN_00518	-	putative ABC transporter
508	 63.62	0	575398..576480	-	360	152969090	-	KPN_00519	-	putative ABC transporter permease
509	 60.05	0	576488..577606	-	372	152969091	-	KPN_00520	-	putative periplasmic binding protein
510	 53.33	0	577878..578267	+	129	152969092	-	KPN_00521	-	hypothetical protein
511	 51.59	-1	578967..579092	-	41	152969093	-	KPN_00522	-	hypothetical protein
512	 59.37	0	579408..580586	+	392	152969094	-	KPN_00523	-	aminobenzoyl-glutamate utilization protein
513	 56.99	0	580639..581382	+	247	152969095	-	KPN_00524	-	extracellular solute-binding family protein 3
514	 62.16	0	581511..582464	+	317	152969096	-	KPN_00525	-	putative aldo/keto reductase
515	 68.60	+1	584069..584845	-	258	152969097	-	KPN_00526	-	putative 3-ketoacyl-(acyl-carrier-protein) reductase
516	 60.33	0	584933..586651	-	572	152969098	-	KPN_00527	-	putative arylsulfatase
517	 62.46	0	586711..587898	-	395	152969099	-	KPN_00528	-	putative iron-sulfur modifier protein
518	 57.92	0	588459..589007	+	182	152969100	-	KPN_00529	-	LuxR transcriptional regulator
519	 63.53	0	590348..591463	+	371	152969101	-	KPN_00530	-	putative deacetylase
520	 61.45	0	591470..592063	-	197	152969102	-	KPN_00531	-	hypothetical protein
521	 62.87	0	592041..593540	-	499	152969103	-	KPN_00532	-	putative amino acid/amine transport protein
522	 62.57	0	593917..594282	-	121	152969104	-	KPN_00533	-	hypothetical protein
523	 58.60	0	594296..595597	-	433	152969105	-	KPN_00534	-	hypothetical protein
524	 63.03	0	595756..597240	+	494	152969106	-	KPN_00535	-	putative aldehyde dehydrogenase
525	 59.11	0	598764..600974	+	736	152969107	-	KPN_00536	-	putative TonB-dependent receptor
526	 59.62	0	601082..602458	+	458	152969108	-	KPN_00537	-	phenylalanine transporter
527	 59.66	0	602610..603851	+	413	152969109	-	KPN_00538	-	putative nucleoside H+ symporter
528	 63.25	0	603868..604890	+	340	152969110	-	KPN_00539	-	putative xylose isomerase-like TIM barrel
529	 63.79	+1	604862..606043	+	393	152969111	-	KPN_00540	-	putative NADH-dependent dehydrogenase
530	 59.13	0	606063..606500	-	145	152969112	-	KPN_00541	-	hypothetical protein
531	 62.49	0	606728..607708	+	326	152969113	-	KPN_00542	-	LacI transcriptional regulator
532	 55.90	0	607712..608956	-	414	152969114	ybdG	KPN_00543	-	putative transport
533	 64.94	+1	610563..611429	+	288	152969115	-	KPN_00544	-	hypothetical protein
534	 61.74	0	612096..613130	+	344	152969116	-	KPN_00545	-	putative permease
535	 51.58	-1	613227..615956	+	909	152969117	-	KPN_00546	-	putative inner membrane protein
536	 54.31	0	616009..616995	-	328	152969118	-	KPN_00547	-	putative phosphosugar isomerases
537	 55.93	0	617060..618121	-	353	152969119	-	KPN_00548	-	putative inner membrane protein
538	 56.26	0	618139..618993	-	284	152969120	-	KPN_00549	-	putative transport protein, PTS system
539	 56.32	0	618996..619739	-	247	152969121	-	KPN_00550	-	putative inner membrane protein
540	 53.29	0	619754..620224	-	156	152969122	-	KPN_00551	-	putative transport protein, PTS system
541	 53.56	0	620217..620651	-	144	152969123	-	KPN_00552	-	putative transport protein, PTS system
542	 57.65	0	620899..621552	-	217	152969124	nfnB	KPN_00553	-	dihydropteridine reductase
543	 56.37	0	621672..622040	-	122	152969125	ybdF	KPN_00554	-	hypothetical protein
544	 61.17	0	622040..622621	-	193	152969126	-	KPN_00555	-	putative regulatory protein
545	 55.26	0	623947..624288	+	113	152969127	-	KPN_00556	-	putative regulatory protein
546	 57.83	0	624306..624554	-	82	152969128	ybdJ	KPN_00557	-	putative inner membrane protein
547	 50.45	-1	624744..624854	-	36	152969129	-	KPN_00558	-	hypothetical protein
548	 62.65	0	625066..627780	+	904	152969130	-	KPN_00559	-	Mg2+ transport ATPase, P-type 1
549	 66.48	+1	627833..628912	+	359	152969131	-	KPN_00560	-	putative secretion protein HlyD
550	 65.92	+1	628926..632018	+	1030	152969132	-	KPN_00561	-	putative acridine efflux pump
551	 61.67	0	632367..633086	-	239	152969133	-	KPN_00562	-	hypothetical protein
552	 62.28	0	633134..634249	-	371	152969134	-	KPN_00563	-	carboxylate-amine ligase
553	 61.93	0	634576..636243	+	555	152969135	-	KPN_00564	-	extracellular solute-binding family protein 5
554	 62.89	0	636262..637215	+	317	152969136	-	KPN_00565	-	putative binding-protein-dependent transport systems inner membrane component
555	 63.53	0	637218..638111	+	297	152969137	-	KPN_00566	-	putative binding-protein-dependent transport systems inner membrane component
556	 64.64	+1	638115..639152	+	345	152969138	-	KPN_00567	-	putative ABC transporter
557	 67.66	+1	639142..640152	+	336	152969139	-	KPN_00568	-	putative ABC transport system ATP-binding protein
558	 64.70	+1	640250..641518	+	422	152969140	-	KPN_00569	-	putative amidohydrolase
559	 65.39	+1	642655..643989	+	444	152969141	-	KPN_00570	-	aminotransferase regulator domain-containing protein
560	 63.59	0	643986..645545	-	519	152969142	-	KPN_00571	-	GntR transcriptional regulator
561	 54.87	0	645712..646542	+	276	152969143	-	KPN_00572	-	glutamine ABC transporter periplasmic-binding protein
562	 61.06	0	646590..647231	+	213	152969144	-	KPN_00573	-	putative binding-protein-dependent transport systems inner membrane component
563	 50.30	-1	647246..647911	+	221	152969145	-	KPN_00574	-	putative binding-protein-dependent transport systems inner membrane component
564	 58.66	0	647904..648665	+	253	152969146	-	KPN_00575	-	putative ABC transporter
565	 63.53	0	648719..649483	-	254	152969147	-	KPN_00576	-	putative oxidoreductase
566	 63.83	+1	649664..651001	+	445	152969148	-	KPN_00577	-	hypothetical protein
567	 63.40	0	651248..651952	-	234	152969149	-	KPN_00578	-	putative ATP-binding component of a transport system
568	 67.14	+1	651939..652775	-	278	152969150	-	KPN_00579	-	putative ABC transporter
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.