IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3961	 62.15	0	4381953..4384034	+	693	152972506	recG	KPN_04000	-	ATP-dependent DNA helicase RecG
3962	 61.23	0	4384083..4385093	+	336	152972507	glpX	KPN_04001	-	fructose 1,6-bisphosphatase II
3963	 60.91	0	4385244..4385990	+	248	152972508	fpr	KPN_04002	-	ferredoxin-NADP reductase
3964	 61.31	0	4385991..4386419	-	142	152972509	yiiR	KPN_04003	-	hypothetical protein
3965	 59.26	0	4386568..4387134	+	188	152972510	yiiQ	KPN_04004	-	hypothetical protein
3966	 58.40	0	4387262..4388011	+	249	152972511	tpiA	KPN_04005	-	triosephosphate isomerase
3967	 63.98	+1	4388104..4389408	-	434	152972512	-	KPN_04006	-	putative sodium/sulphate symporter
3968	 62.63	0	4389473..4390216	-	247	152972513	cdh	KPN_04007	-	CDP-diacylglycerol pyrophosphatase
3969	 56.36	0	4390406..4391395	-	329	152972514	sbp	KPN_04008	-	sulfate transporter subunit
3970	 50.41	-1	4391547..4391792	-	81	152972515	yiiU	KPN_04009	-	hypothetical protein
3971	 59.15	0	4392235..4393086	+	283	152972516	glpF	KPN_04010	-	MIP channel, glycerol diffusion
3972	 60.05	0	4393108..4394619	+	503	152972517	glpK	KPN_04011	-	glycerol kinase
3973	 60.76	0	4394734..4395936	-	400	152972518	gltS	KPN_04012	-	glutamate transport
3974	 61.64	0	4396221..4397612	+	463	152972519	yicE	KPN_04013	-	purine/xanthine transport protein
3975	 63.00	0	4397753..4399468	+	571	152972520	yicH	KPN_04014	-	hypothetical protein
3976	 54.10	0	4399714..4401273	+	519	152972521	-	KPN_04015	-	phosphotransferase system PTS
3977	 57.10	0	4401286..4402665	+	459	152972522	-	KPN_04016	-	glycoside hydrolase family protein 4
3978	 52.97	0	4402712..4403434	-	240	152972523	-	KPN_04017	-	putative sugar isomerase
3979	 60.41	0	4403590..4405908	-	772	152972524	yicI	KPN_04018	-	alpha-xylosidase YicI
3980	 59.28	0	4405921..4407315	-	464	152972525	yicJ	KPN_04019	-	putative transporter
3981	 59.62	0	4407868..4408335	+	155	152972526	-	KPN_04021	-	hypothetical protein
3982	 63.89	+1	4408448..4409455	+	335	152972527	-	KPN_04022	-	putative oxireductase; alginate lyase
3983	 62.89	0	4409457..4409747	+	96	152972528	-	KPN_04023	-	hypothetical protein
3984	 54.08	0	4409798..4410496	-	232	152972529	-	KPN_04024	-	hypothetical protein
3985	 64.68	+1	4411914..4412867	-	317	152972530	-	KPN_04026	-	putative helix-turn-helix, AraC type
3986	 60.64	0	4412889..4413668	-	259	152972531	-	KPN_04027	-	putative beta-lactamase-like protein
3987	 61.68	0	4413834..4414394	+	186	152972532	-	KPN_04028	-	hypothetical protein
3988	 63.16	0	4414384..4415238	-	284	152972533	-	KPN_04029	-	hypothetical protein
3989	 58.64	0	4415263..4416072	-	269	152972534	nlpA	KPN_04030	-	cytoplasmic membrane lipoprotein-28
3990	 67.22	+1	4416201..4417106	-	301	152972535	-	KPN_04031	-	putative ARAC-type regulatory protein
3991	 60.71	0	4417223..4417759	+	178	152972536	-	KPN_04032	-	hypothetical protein
3992	 60.51	0	4417780..4418250	-	156	152972537	-	KPN_04033	-	50S ribosomal protein L21
3993	 61.56	0	4418253..4418879	-	208	152972538	-	KPN_04034	-	phophatase-like domain-containing protein
3994	 65.46	+1	4418975..4419889	+	304	152972539	-	KPN_04035	-	LysR family transcriptional regulator
3995	 63.05	0	4419886..4421379	-	497	152972540	-	KPN_04036	-	multidrug resistance protein membrane translocase
3996	 61.11	0	4421460..4422107	+	215	152972541	-	KPN_04037	-	putative regulatory protein  TetR
3997	 56.12	0	4422611..4423027	-	138	152972542	-	KPN_04038	-	putative acetyltransferase
3998	 64.53	+1	4423503..4424531	+	342	152972543	-	KPN_04039	-	putative secretion protein
3999	 64.09	+1	4424531..4427638	+	1035	152972544	-	KPN_04040	-	acridine efflux pump
4000	 64.51	+1	4427660..4429006	+	448	152972545	-	KPN_04041	-	putative outer membrane efflux protein
4001	 64.35	+1	4429052..4430215	+	387	152972546	-	KPN_04042	-	putative general substrate transporter
4002	 62.02	0	4430378..4431280	+	300	152972547	-	KPN_04043	-	hypothetical protein
4003	 63.88	+1	4431305..4432738	+	477	152972548	-	KPN_04044	-	N-acetylmuramic acid phosphotransfer permease
4004	 61.57	0	4432890..4433792	+	300	152972549	-	KPN_04045	-	putative membrane protein, transport
4005	 61.48	0	4434193..4435059	-	288	152972550	-	KPN_04046	-	putative dehydrogenase
4006	 65.01	+1	4435059..4436144	-	361	152972551	-	KPN_04047	-	hypothetical protein
4007	 62.61	0	4436145..4436858	-	237	152972552	-	KPN_04048	-	hypothetical protein
4008	 60.19	0	4436855..4437595	-	246	152972553	-	KPN_04049	-	hypothetical protein
4009	 63.56	0	4437759..4438949	+	396	152972554	-	KPN_04050	-	putative transcriptional regulator (LysR familiy)
4010	 58.51	0	4438946..4440208	-	420	152972555	-	KPN_04051	-	protocatechuate 4,5-dioxygenase
4011	 60.54	0	4440222..4441592	-	456	152972556	-	KPN_04052	-	putative general substrate transporter
4012	 57.75	0	4441804..4442745	-	313	152972557	-	KPN_04053	-	LacI transcriptional regulator
4013	 53.65	0	4443039..4443353	+	104	152972558	-	KPN_04054	-	putative phosphotransferase system, lactose/cellobiose-specific IIB subunit
4014	 57.29	0	4443365..4444687	+	440	152972559	-	KPN_04055	-	putative phosphotransferase system, EIIC
4015	 52.48	0	4444785..4445087	+	100	152972560	-	KPN_04056	-	putative phosphotransferase system PTS, lactose/cellobiose-specific IIA subunit
4016	 61.26	0	4445262..4446611	+	449	152972561	-	KPN_04057	-	putative maltoporin precursor
4017	 61.40	0	4446805..4447602	-	265	152972562	phnV	KPN_04058	-	2-aminoethylphosphonate transporter, membrane component
4018	 57.99	0	4447605..4448468	-	287	152972563	phnU	KPN_04059	-	2-aminoethylphosphonate transporter, membrane component
4019	 61.64	0	4448465..4449577	-	370	152972564	phnT	KPN_04060	-	2-aminoethylphosphonate transporter,ATPase component
4020	 60.26	0	4449583..4450596	-	337	152972565	phnS	KPN_04061	-	2-aminoethylphosphonate transporter, periplasmic-binding component
4021	 60.66	0	4450773..4451471	-	232	152972566	phnR	KPN_04062	-	2-aminoethylphosphonate transport, repressor
4022	 59.60	0	4451634..4452737	+	367	152972567	phnW	KPN_04063	-	2-aminoethylphosphonate--pyruvate transaminase
4023	 63.21	0	4452747..4453556	+	269	152972568	phnX	KPN_04064	-	phosphonoacetaldehyde hydrolase
4024	 60.30	0	4453553..4454746	-	397	152972569	-	KPN_04065	-	ribonucleoside transporter
4025	 42.49	-2	4454925..4455317	+	130	152972570	-	KPN_04066	-	putative cytoplasmic protein
4026	 47.84	-1	4455301..4455624	+	107	152972571	-	KPN_04067	-	putative helix-turn-helix protein
4027	 57.84	0	4455754..4456206	-	150	152972572	yicN	KPN_04068	-	hypothetical protein
4028	 58.76	0	4456343..4457734	-	463	152972573	uhpT	KPN_04069	-	sugar phosphate antiporter
4029	 61.78	0	4457880..4459208	-	442	152972574	uhpC	KPN_04070	-	regulatory protein UhpC
4030	 64.14	+1	4459220..4460722	-	500	152972575	uhpB	KPN_04071	-	sensory histidine kinase UhpB
4031	 62.63	0	4460719..4461312	-	197	152972576	uhpA	KPN_04072	-	DNA-binding transcriptional activator UhpA
4032	 51.74	-1	4461463..4461750	-	95	152972577	ilvN	KPN_04073	-	acetolactate synthase 1 regulatory subunit
4033	 61.97	0	4461754..4463412	-	552	152972578	ilvB	KPN_04074	-	acetolactate synthase catalytic subunit
4034	 61.46	0	4463547..4463642	-	31	152972579	ivbL	KPN_04075	-	ilvB operon leader peptide
4035	 61.00	0	4464473..4464931	+	152	152972580	-	KPN_04076	-	putative acyltransferase
4036	 64.75	+1	4464999..4465832	+	277	152972581	-	KPN_04077	-	putative membrane protein, transport
4037	 64.67	+1	4466041..4467192	+	383	152972582	emrD	KPN_04078	-	multidrug resistance protein D
4038	 58.77	0	4467352..4468275	-	307	152972583	dsdC	KPN_04079	-	DNA-binding transcriptional regulator DsdC
4039	 58.67	0	4468501..4469838	+	445	152972584	dsdX	KPN_04080	-	permease DsdX
4040	 61.41	0	4469853..4471184	+	443	152972585	dsdA	KPN_04081	-	D-serine dehydratase
4041	 63.15	0	4471188..4471613	-	141	152972586	yidF	KPN_04082	-	putative regulator
4042	 58.13	0	4471685..4472047	-	120	152972587	yidG	KPN_04083	-	hypothetical protein
4043	 60.34	0	4472037..4472384	-	115	152972588	yidH	KPN_04084	-	hypothetical protein
4044	 57.60	0	4472486..4473808	-	440	152972589	-	KPN_04085	-	glycoside hydrolase family protein 4
4045	 59.30	0	4473805..4475556	-	583	152972590	-	KPN_04086	-	PTS family protein IIC
4046	 58.23	0	4475726..4476448	+	240	152972591	-	KPN_04087	-	GntR transcriptional regulator
4047	 60.59	0	4476440..4478101	-	553	152972592	yidE	KPN_04088	-	hypothetical protein
4048	 47.76	-1	4478203..4479027	-	274	152972593	-	KPN_04089	-	DNA-damage-inducible protein D
4049	 56.18	0	4479164..4479592	-	142	152972594	ibpB	KPN_04090	-	heat shock chaperone IbpB
4050	 54.25	0	4479709..4480167	-	152	152972595	ibpA	KPN_04091	-	heat shock protein IbpA
4051	 60.15	0	4480509..4480769	+	86	152972596	yidQ	KPN_04092	-	hypothetical protein
4052	 61.94	0	4480771..4481997	-	408	152972597	yidR	KPN_04093	-	hypothetical protein
4053	 56.43	0	4482049..4483386	-	445	152972598	dgoT	KPN_04094	-	D-galactonate transport
4054	 53.79	0	4483564..4484712	-	382	152972599	dgoD	KPN_04095	-	putative mandelate racemase/muconate lactonizing enzyme
4055	 61.33	0	4484709..4485326	-	205	152972600	dgoA	KPN_04096	-	2-dehydro-3-deoxy-6-phosphogalactonate aldolase
4056	 58.82	0	4485310..4486188	-	292	152972601	dgoK	KPN_04097	-	2-oxo-3-deoxygalactonate kinase
4057	 55.80	0	4486185..4486874	-	229	152972602	dgoR	KPN_04098	-	galactonate utilization transcriptional repressor
4058	 59.08	0	4487104..4488237	-	377	152972603	-	KPN_04099	-	putative outer membrane protein
4059	 55.84	0	4488234..4489295	-	353	152972604	-	KPN_04100	-	hypothetical protein
4060	 54.74	0	4489466..4490278	-	270	152972605	yidA	KPN_04101	-	sugar phosphatase
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.