IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3550	 55.65	0	3942030..3943373	+	447	152972095	argG	KPN_03580	-	argininosuccinate synthase
3551	 49.21	-1	3943543..3944172	+	209	152972096	-	KPN_03581	-	hypothetical protein
3552	 54.53	0	3944514..3945065	+	183	152972097	-	KPN_03582	-	hypothetical protein
3553	 54.23	0	3945107..3945508	-	133	152972098	-	KPN_03583	-	hypothetical protein
3554	 53.33	0	3945749..3946078	-	109	152972099	secG	KPN_03585	-	preprotein translocase subunit SecG
3555	 59.27	0	3946308..3947645	-	445	152972100	glmM	KPN_03586	-	phosphoglucosamine mutase
3556	 56.42	0	3947638..3948486	-	282	152972101	folP	KPN_03587	-	dihydropteroate synthase
3557	 56.64	0	3948580..3950514	-	644	152972102	hflB	KPN_03588	-	ATP-dependent metalloprotease
3558	 50.48	-1	3950614..3951243	-	209	152972103	rrmJ	KPN_03589	-	23S rRNA methyltransferase J
3559	 51.36	-1	3951367..3951660	+	97	152972104	yhbY	KPN_03590	-	hypothetical protein
3560	 53.04	0	3951813..3952289	-	158	152972105	greA	KPN_03591	-	transcription elongation factor GreA
3561	 60.81	0	3952525..3953958	+	477	152972106	dacB	KPN_03592	-	D-alanyl-D-alanine carboxypeptidase/endopeptidase
3562	 57.34	0	3954010..3955188	-	392	152972107	yhbZ	KPN_03593	-	GTPase ObgE
3563	 56.00	0	3955204..3956169	-	321	152972108	yhbE	KPN_03594	-	hypothetical protein
3564	 49.61	-1	3956263..3956520	-	85	152972109	rpmA	KPN_03595	-	50S ribosomal protein L27
3565	 49.04	-1	3956541..3956852	-	103	152972110	rplU	KPN_03596	-	50S ribosomal protein L21
3566	 56.58	0	3957113..3958084	+	323	152972111	ispB	KPN_03597	-	octaprenyl-diphosphate synthase
3567	 56.41	0	3958282..3958554	+	90	152972112	nlp	KPN_03598	-	DNA-binding transcriptional regulator Nlp
3568	 60.16	0	3958610..3959869	-	419	152972113	murA	KPN_03599	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
3569	 53.73	0	3959923..3960177	-	84	152972114	yrbA	KPN_03600	-	BolA family transcriptional regulator
3570	 64.26	+1	3960314..3960604	-	96	152972115	yrbB	KPN_03601	-	hypothetical protein
3571	 55.82	0	3960604..3961239	-	211	152972116	yrbC	KPN_03602	-	ABC transporter ATP-binding protein
3572	 57.61	0	3961258..3961809	-	183	152972117	yrbD	KPN_03603	-	ABC transporter periplasmic substrate-binding protein
3573	 58.37	0	3961814..3962596	-	260	152972118	yrbE	KPN_03604	-	ABC transporter membrane protein
3574	 56.59	0	3962604..3963476	-	290	152972119	yrbF	KPN_03605	-	putative ABC transporter ATP-binding protein YrbF
3575	 59.30	0	3963626..3964603	+	325	152972120	yrbG	KPN_03606	-	putative calcium/sodium:proton antiporter
3576	 58.71	0	3964600..3965604	+	334	152972121	yrbH	KPN_03607	-	D-arabinose 5-phosphate isomerase
3577	 56.61	0	3965619..3966185	+	188	152972122	yrbI	KPN_03608	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
3578	 50.00	-1	3966182..3966757	+	191	152972123	yrbK	KPN_03609	-	hypothetical protein
3579	 54.40	0	3966726..3967271	+	181	152972124	yhbN	KPN_03610	-	hypothetical protein
3580	 57.58	0	3967278..3968003	+	241	152972125	yhbG	KPN_03611	-	putative ABC transporter ATP-binding protein YhbG
3581	 56.82	0	3968093..3969484	+	463	152972126	rpoN	KPN_03612	-	RNA polymerase factor sigma-54
3582	 46.53	-1	3969507..3969794	+	95	152972127	yhbH	KPN_03613	-	putative sigma(54) modulation protein
3583	 56.65	0	3969865..3970353	+	162	152972128	ptsN	KPN_03614	-	sugar-specific enzyme IIA component of PTS
3584	 57.19	0	3970399..3971253	+	284	152972129	yhbJ	KPN_03615	-	hypothetical protein
3585	 57.14	0	3971250..3971522	+	90	152972130	ptsO	KPN_03616	-	phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr)
3586	 61.02	0	3971586..3972311	-	241	152972131	mtgA	KPN_03617	-	monofunctional biosynthetic peptidoglycan transglycosylase
3587	 62.69	0	3972308..3972961	-	217	152972132	yhbL	KPN_03618	-	isoprenoid biosynthesis protein with amidotransferase-like domain
3588	 55.51	0	3973195..3975534	-	779	152972133	arcB	KPN_03619	-	aerobic respiration control sensor protein ArcB
3589	 55.40	0	3975681..3976745	-	354	152972134	-	KPN_03620	-	mannonate dehydratase
3590	 57.75	0	3977027..3978058	+	343	152972135	-	KPN_03621	-	putative dehydrogenase, NAD(P)-binding, starvation-sensing protein
3591	 52.53	0	3978240..3979427	+	395	152972136	-	KPN_03622	-	putative transport protein
3592	 59.38	0	3979479..3980411	-	310	152972137	yhcC	KPN_03623	-	putative enzyme
3593	 60.50	0	3981199..3985545	+	1448	152972138	gltB	KPN_03624	-	glutamate synthase subunit alpha
3594	 60.04	0	3985555..3986973	+	472	152972139	gltD	KPN_03625	-	glutamate synthase subunit beta
3595	 61.13	0	3987028..3987732	-	234	152972140	nanE	KPN_03626	-	N-acetylmannosamine-6-phosphate 2-epimerase
3596	 62.02	0	3987857..3988351	-	164	152972141	sspB	KPN_03627	-	ClpXP protease specificity-enhancing factor
3597	 55.56	0	3988355..3988993	-	212	152972142	sspA	KPN_03628	-	stringent starvation protein A
3598	 52.42	0	3989305..3989697	-	130	152972143	rpsI	KPN_03629	-	30S ribosomal protein S9
3599	 51.05	-1	3989713..3990141	-	142	152972144	rplM	KPN_03630	-	50S ribosomal protein L13
3600	 60.73	0	3990407..3991534	-	375	152972145	yhcM	KPN_03631	-	putative ATPase
3601	 56.30	0	3991719..3992123	+	134	152972146	yhcB	KPN_03632	-	cytochrome d ubiquinol oxidase subunit III
3602	 58.48	0	3992297..3993664	+	455	152972147	degQ	KPN_03633	-	serine endoprotease
3603	 60.25	0	3993752..3994810	+	352	152972148	degS	KPN_03634	-	serine endoprotease
3604	 65.43	+1	3994836..3995480	-	214	152972149	-	KPN_03635	-	hypothetical protein
3605	 67.13	+1	3995606..3996907	-	433	152972150	-	KPN_03636	-	putative oxaloacetate decarboxylase beta chain
3606	 66.72	+1	3996923..3998692	-	589	152972151	-	KPN_03637	-	pyruvate carboxylase subunit B
3607	 66.20	+1	3998726..3998938	+	70	152972152	-	KPN_03638	-	hypothetical protein
3608	 45.95	-2	3999101..3999718	-	205	152972153	-	KPN_03639	-	L(+)-tartrate dehydratase subunit beta
3609	 55.10	0	3999718..4000590	-	290	152972154	-	KPN_03640	-	tartrate dehydratase subunit alpha
3610	 54.06	0	4000650..4001918	-	422	152972155	-	KPN_03641	-	putative cation transporter
3611	 52.03	-1	4002130..4002744	-	204	152972156	-	KPN_03642	-	GntR family transcriptional regulator
3612	 53.16	0	4002782..4003366	-	194	152972157	-	KPN_03643	-	GntR family transcriptional regulator
3613	 56.98	0	4003542..4004480	-	312	152972158	mdh	KPN_03644	-	malate dehydrogenase
3614	 53.50	0	4004895..4005365	+	156	152972159	argR	KPN_03645	-	arginine repressor
3615	 55.43	0	4006102..4006368	+	88	152972160	yhcN	KPN_03647	-	hypothetical protein
3616	 50.00	-1	4006419..4006694	-	91	152972161	yhcO	KPN_03648	-	hypothetical protein
3617	 57.72	0	4006774..4008741	-	655	152972162	yhcP	KPN_03649	-	p-hydroxybenzoic acid efflux subunit AaeB
3618	 57.13	0	4008747..4009637	-	296	152972163	yhcQ	KPN_03650	-	p-hydroxybenzoic acid efflux subunit AaeA
3619	 46.91	-1	4009687..4009929	-	80	152972164	yhcR	KPN_03651	-	hypothetical protein
3620	 56.91	0	4010040..4010951	+	303	152972165	yhcS	KPN_03652	-	putative DNA-binding transcriptional regulator
3621	 61.07	0	4010987..4012432	-	481	152972166	tldD	KPN_03653	-	protease TldD
3622	 58.69	0	4012521..4016294	-	1257	152972167	yhdP	KPN_03654	-	hypothetical protein
3623	 54.83	0	4016356..4017825	-	489	152972168	rng	KPN_03655	-	ribonuclease G
3624	 58.08	0	4017828..4018409	-	193	152972169	maf	KPN_03656	-	Maf-like protein
3625	 53.58	0	4018417..4018905	-	162	152972170	mreD	KPN_03657	-	rod shape-determining protein MreD
3626	 60.83	0	4018905..4019897	-	330	152972171	mreC	KPN_03658	-	cell wall structural complex MreBCD transmembrane component MreC
3627	 57.85	0	4019968..4021011	-	347	152972172	mreB	KPN_03659	-	regulator of ftsI, penicillin binding protein 3, septation function
3628	 57.34	0	4021317..4023257	-	646	152972173	yhdA	KPN_03660	-	regulatory protein CsrD
3629	 60.47	0	4023742..4024758	+	338	152972174	-	KPN_03661	-	putative sulfite oxidase subunit YedY
3630	 56.98	0	4024758..4025366	+	202	152972175	-	KPN_03662	-	putative sulfite oxidase subunit YedZ
3631	 53.58	0	4025638..4026042	+	134	152972176	-	KPN_03663	-	hypothetical protein
3632	 54.91	0	4026065..4026532	+	155	152972177	accB	KPN_03664	-	acetyl-CoA carboxylase
3633	 56.22	0	4026543..4027892	+	449	152972178	accC	KPN_03665	-	acetyl-CoA carboxylase biotin carboxylase subunit
3634	 57.20	0	4028003..4028245	+	80	152972179	yhdT	KPN_03666	-	hypothetical protein
3635	 60.21	0	4028232..4029686	+	484	152972180	panF	KPN_03667	-	sodium/panthothenate symporter
3636	 58.39	0	4029698..4030579	+	293	152972181	prmA	KPN_03668	-	ribosomal protein L11 methyltransferase
3637	 54.75	0	4031030..4031902	+	290	152972182	yhdG	KPN_03669	-	FMN-linked protein
3638	 48.48	-1	4031927..4032223	+	98	152972183	fis	KPN_03670	-	DNA-binding protein Fis
3639	 51.22	-1	4032308..4032961	-	217	152972184	envR	KPN_03671	-	DNA-binding transcriptional regulator EnvR
3640	 57.98	0	4033340..4034479	+	379	152972185	acrE	KPN_03672	-	transmembrane protein affecting septum formation and cell membrane permeability
3641	 56.19	0	4034492..4037602	+	1036	152972186	acrF	KPN_03673	-	integral transmembrane protein; acridine resistance
3642	 56.76	0	4037895..4038116	+	73	152972187	yhdV	KPN_03674	-	hypothetical protein
3643	 51.53	-1	4043911..4044465	+	184	152972188	yrdA	KPN_03680	-	putative acyl transferase, ferripyochelin-binding
3644	 56.20	0	4044441..4044698	-	85	152972189	yrdB	KPN_03681	-	hypothetical protein
3645	 54.58	0	4044695..4045513	-	272	152972190	aroE	KPN_03682	-	shikimate 5-dehydrogenase
3646	 57.94	0	4045517..4046089	-	190	152972191	yrdC	KPN_03683	-	putative ribosome maturation factor
3647	 54.51	0	4046094..4046636	-	180	152972192	yrdD	KPN_03684	-	putative DNA topoisomerase
3648	 49.02	-1	4046663..4047121	-	152	152972193	smg	KPN_03685	-	hypothetical protein
3649	 58.67	0	4047108..4048232	-	374	152972194	smf	KPN_03686	-	hypothetical protein
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.