IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3468	 63.43	0	3857069..3858490	+	473	152972013	dhaM	KPN_03497	-	dihydroxyacetone kinase subunit M
3469	 64.55	+1	3858566..3860215	+	549	152972014	dhaK	KPN_03498	-	dihydroxyacetone kinase N-terminal domain-containing protein
3470	 61.78	0	3860371..3861147	-	258	152972015	yqjH	KPN_03499	-	putative enzyme, ferredoxin reductase-like, FAD-linked, NADP-linked
3471	 61.44	0	3861385..3861939	+	184	152972016	yqjI	KPN_03500	-	hypothetical protein
3472	 60.08	0	3862287..3863576	+	429	152972017	ygjG	KPN_03501	-	putrescine--2-oxoglutarate aminotransferase
3473	 55.56	0	3863623..3863919	-	98	152972018	yneC	KPN_03502	-	autoinducer-2 (AI-2) modifying protein LsrG
3474	 59.80	0	3863916..3864803	-	295	152972019	yneB	KPN_03503	-	aldolase
3475	 58.78	0	3864815..3865816	-	333	152972020	yneA	KPN_03504	-	putative LACI-type transcriptional regulator
3476	 62.06	0	3865818..3866816	-	332	152972021	ydeZ	KPN_03505	-	putative ABC transport system permease protein
3477	 63.00	0	3866817..3867851	-	344	152972022	ydeY	KPN_03506	-	putative ABC transport system permease protein
3478	 61.84	0	3867848..3869338	-	496	152972023	ego	KPN_03507	-	putative ATP-binding component of a transport system
3479	 64.51	+1	3869554..3870525	+	323	152972024	ydeW	KPN_03508	-	SorC family transcriptional regulator
3480	 63.98	+1	3870563..3872161	+	532	152972025	ydeV	KPN_03509	-	autoinducer-2 (AI-2) kinase
3481	 62.96	0	3872344..3874365	+	673	152972026	fadH	KPN_03510	-	2,4-dieonyl-CoA reductase, FMN-linked
3482	 58.71	0	3874474..3875604	-	376	152972027	ygjO	KPN_03511	-	putative enzyme
3483	 65.40	+1	3875690..3876397	-	235	152972028	-	KPN_03512	-	hypothetical protein
3484	 62.69	0	3876441..3877043	+	200	152972029	-	KPN_03513	-	helix-turn-helix motif-containing protein
3485	 54.49	0	3877063..3877563	+	166	152972030	ygjP	KPN_03514	-	hypothetical protein
3486	 56.87	0	3877637..3878626	+	329	152972031	ygjR	KPN_03515	-	putative NAD(P)-binding dehydrogenase
3487	 58.85	0	3878898..3879869	+	323	152972032	ygjT	KPN_03516	-	putative transmembrane protein
3488	 60.50	0	3880136..3881383	+	415	152972033	ygjU	KPN_03517	-	serine/threonine transporter SstT
3489	 57.48	0	3881399..3881953	-	184	152972034	ygjV	KPN_03518	-	hypothetical protein
3490	 58.27	0	3882083..3883570	-	495	152972035	uxaA	KPN_03519	-	altronate hydrolase
3491	 55.82	0	3883589..3884989	-	466	152972036	uxaC	KPN_03520	-	glucuronate isomerase
3492	 60.06	0	3885482..3886783	+	433	152972037	exuT	KPN_03521	-	major facilitator superfamily hexuronate transport protein
3493	 53.02	0	3886911..3887687	+	258	152972038	exuR	KPN_03522	-	DNA-binding transcriptional repressor ExuR
3494	 54.60	0	3888028..3888690	+	220	152972039	yqjA	KPN_03523	-	putative integral membrane protein
3495	 61.50	0	3888690..3889076	+	128	152972040	yqjB	KPN_03524	-	hypothetical protein
3496	 49.59	-1	3889226..3889594	+	122	152972041	yqjC	KPN_03525	-	hypothetical protein
3497	 56.54	0	3889640..3889945	+	101	152972042	yqjD	KPN_03526	-	hypothetical protein
3498	 59.40	0	3889948..3890346	+	132	152972043	yqjE	KPN_03527	-	hypothetical protein
3499	 64.65	+1	3890343..3890639	+	98	152972044	yqjK	KPN_03528	-	hypothetical protein
3500	 54.71	0	3890985..3891377	+	130	152972045	yqjF	KPN_03529	-	hypothetical protein
3501	 55.42	0	3891458..3892444	+	328	152972046	yqjG	KPN_03530	-	S-transferase domain-containing protein
3502	 53.39	0	3892571..3892939	+	122	152972047	yhaH	KPN_03531	-	putative cytochrome
3503	 59.31	0	3892981..3893877	-	298	152972048	yhaJ	KPN_03532	-	LysR family transcriptional regulator
3504	 57.69	0	3893982..3894683	+	233	152972049	yhaK	KPN_03533	-	hypothetical protein
3505	 49.39	-1	3894949..3895359	-	136	152972050	-	KPN_03534	-	periplasmic protein
3506	 50.32	-1	3895665..3896129	+	154	152972051	-	KPN_03535	-	hypothetical protein
3507	 60.21	0	3896774..3897919	-	381	152972052	garK	KPN_03536	-	glycerate kinase I
3508	 57.13	0	3897984..3898874	-	296	152972053	garR	KPN_03537	-	tartronate semialdehyde reductase
3509	 60.18	0	3898901..3899671	-	256	152972054	garL	KPN_03538	-	alpha-dehydro-beta-deoxy-D-glucarate aldolase
3510	 53.53	0	3899698..3901029	-	443	152972055	garP	KPN_03539	-	putative transport protein
3511	 58.97	0	3901422..3902993	+	523	152972056	garD	KPN_03540	-	(D)-galactarate dehydrogenase
3512	 55.63	0	3903048..3903998	-	316	152972057	ydjH	KPN_03541	-	putative kinase
3513	 56.07	0	3903998..3904837	-	279	152972058	agaR	KPN_03542	-	putative DEOR-type transcriptional regulator
3514	 55.79	0	3905152..3906006	+	284	152972059	gatY	KPN_03543	-	tagatose-bisphosphate aldolase
3515	 53.55	0	3906031..3906945	+	304	152972060	pfkB	KPN_03544	-	6-phosphofructokinase II
3516	 54.49	0	3906956..3908368	+	470	152972061	fruA	KPN_03545	-	PTS family enzyme IIB'BC, fructose-specific
3517	 58.09	0	3908379..3909194	+	271	152972062	fruB	KPN_03546	-	PTS family enzyme IIA/FPr
3518	 58.02	0	3909371..3910642	+	423	152972063	gatZ	KPN_03547	-	putative tagatose 6-phosphate kinase 1
3519	 57.91	0	3910657..3911124	+	155	152972064	gatA	KPN_03548	-	galactitol-specific PTS system component IIA
3520	 56.84	0	3911151..3911435	+	94	152972065	gatB	KPN_03549	-	galactitol-specific PTS system component IIB
3521	 56.54	0	3911441..3912823	+	460	152972066	gatC	KPN_03550	-	PTS family enzyme IIC, galactitol-specific
3522	 59.29	0	3912873..3913916	+	347	152972067	gatD	KPN_03551	-	galactitol-1-phosphate dehydrogenase
3523	 53.88	0	3914027..3914800	+	257	152972068	agaR	KPN_03552	-	putative DEOR-type transcriptional regulator
3524	 50.90	-1	3914835..3915836	-	333	152972069	fic	KPN_03553	-	hypothetical protein
3525	 57.87	0	3915840..3916703	-	287	152972070	yraL	KPN_03554	-	methyltransferase domain-containing protein
3526	 61.05	0	3916881..3918875	+	664	152972071	yraM	KPN_03555	-	putative enzyme
3527	 57.62	0	3918833..3919219	+	128	152972072	yraN	KPN_03556	-	hypothetical protein
3528	 56.51	0	3919245..3919835	+	196	152972073	yraO	KPN_03557	-	DnaA initiator-associating protein DiaA
3529	 59.90	0	3919845..3920420	+	191	152972074	yraP	KPN_03558	-	hypothetical protein
3530	 62.63	0	3920542..3921582	-	346	152972075	yraQ	KPN_03559	-	hypothetical protein
3531	 61.47	0	3921658..3922350	-	230	152972076	yraR	KPN_03560	-	putative NADH dehydrogenase
3532	 57.73	0	3922434..3922970	+	178	152972077	yhbO	KPN_03561	-	intracellular proteinase
3533	 61.04	0	3922932..3923375	-	147	152972078	yhbP	KPN_03562	-	hypothetical protein
3534	 55.14	0	3923395..3923715	+	106	152972079	yhbQ	KPN_03563	-	GIY-YIG nuclease superfamily protein
3535	 62.50	0	3923702..3924205	-	167	152972080	yhbS	KPN_03564	-	hypothetical protein
3536	 57.65	0	3924199..3924675	-	158	152972081	yhbT	KPN_03565	-	hypothetical protein
3537	 60.24	0	3924945..3925940	+	331	152972082	yhbU	KPN_03566	-	putative collagenase
3538	 58.70	0	3925946..3926824	+	292	152972083	yhbV	KPN_03567	-	putative protease
3539	 60.32	0	3926968..3927975	+	335	152972084	yhbW	KPN_03568	-	hypothetical protein
3540	 58.39	0	3928020..3929264	-	414	152972085	mtr	KPN_03569	-	tryptophan permease
3541	 59.83	0	3929409..3931340	-	643	152972086	deaD	KPN_03570	-	ATP-dependent RNA helicase DeaD
3542	 50.82	-1	3931518..3932375	-	285	152972087	nlpI	KPN_03571	-	lipoprotein NlpI
3543	 57.26	0	3932511..3934646	-	711	152972088	pnp	KPN_03572	-	polynucleotide phosphorylase/polyadenylase
3544	 51.48	-1	3934889..3935158	-	89	152972089	rpsO	KPN_03573	-	30S ribosomal protein S15
3545	 59.89	0	3935307..3936251	-	314	152972090	truB	KPN_03574	-	tRNA pseudouridine synthase B
3546	 54.73	0	3936251..3936652	-	133	152972091	rbfA	KPN_03575	-	ribosome-binding factor A
3547	 55.44	0	3936755..3939445	-	896	152972092	infB	KPN_03576	-	translation initiation factor IF-2
3548	 55.91	0	3939470..3940957	-	495	152972093	nusA	KPN_03577	-	transcription elongation factor NusA
3549	 53.19	0	3940985..3941407	-	140	152972094	yhbC	KPN_03578	-	hypothetical protein
3550	 55.65	0	3942030..3943373	+	447	152972095	argG	KPN_03580	-	argininosuccinate synthase
3551	 49.21	-1	3943543..3944172	+	209	152972096	-	KPN_03581	-	hypothetical protein
3552	 54.53	0	3944514..3945065	+	183	152972097	-	KPN_03582	-	hypothetical protein
3553	 54.23	0	3945107..3945508	-	133	152972098	-	KPN_03583	-	hypothetical protein
3554	 53.33	0	3945749..3946078	-	109	152972099	secG	KPN_03585	-	preprotein translocase subunit SecG
3555	 59.27	0	3946308..3947645	-	445	152972100	glmM	KPN_03586	-	phosphoglucosamine mutase
3556	 56.42	0	3947638..3948486	-	282	152972101	folP	KPN_03587	-	dihydropteroate synthase
3557	 56.64	0	3948580..3950514	-	644	152972102	hflB	KPN_03588	-	ATP-dependent metalloprotease
3558	 50.48	-1	3950614..3951243	-	209	152972103	rrmJ	KPN_03589	-	23S rRNA methyltransferase J
3559	 51.36	-1	3951367..3951660	+	97	152972104	yhbY	KPN_03590	-	hypothetical protein
3560	 53.04	0	3951813..3952289	-	158	152972105	greA	KPN_03591	-	transcription elongation factor GreA
3561	 60.81	0	3952525..3953958	+	477	152972106	dacB	KPN_03592	-	D-alanyl-D-alanine carboxypeptidase/endopeptidase
3562	 57.34	0	3954010..3955188	-	392	152972107	yhbZ	KPN_03593	-	GTPase ObgE
3563	 56.00	0	3955204..3956169	-	321	152972108	yhbE	KPN_03594	-	hypothetical protein
3564	 49.61	-1	3956263..3956520	-	85	152972109	rpmA	KPN_03595	-	50S ribosomal protein L27
3565	 49.04	-1	3956541..3956852	-	103	152972110	rplU	KPN_03596	-	50S ribosomal protein L21
3566	 56.58	0	3957113..3958084	+	323	152972111	ispB	KPN_03597	-	octaprenyl-diphosphate synthase
3567	 56.41	0	3958282..3958554	+	90	152972112	nlp	KPN_03598	-	DNA-binding transcriptional regulator Nlp
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.