IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3398	 61.65	0	3789218..3789835	+	205	152971980	ygiH	KPN_03463	-	putative glycerol-3-phosphate acyltransferase PlsY
3399	 63.76	+1	3790233..3791057	+	274	152971981	ureD	KPN_03464	-	urease accessory protein ureD
3400	 61.72	0	3791067..3791369	+	100	152971982	-	KPN_03465	-	urease subunit gamma
3401	 62.62	0	3791379..3791699	+	106	152971983	-	KPN_03466	-	urease subunit beta
3402	 63.32	0	3791692..3793395	+	567	152971984	-	KPN_03467	-	urease subunit alpha
3403	 62.05	0	3793405..3793881	+	158	152971985	ureE	KPN_03468	-	urease accessory protein UreE
3404	 67.41	+1	3793883..3794557	+	224	152971986	ureF	KPN_03469	-	urease accessory protein ureF
3405	 59.71	0	3794566..3795183	+	205	152971987	ureG	KPN_03470	-	urease accessory protein ureG
3406	 63.31	0	3796989..3798002	-	337	152971988	ygjD	KPN_03471	-	O-sialoglycoprotein endopeptidase
3407	 51.39	-1	3798240..3798455	+	71	152971989	rpsU	KPN_03472	-	30S ribosomal protein S21
3408	 56.99	0	3798567..3800312	+	581	152971990	dnaG	KPN_03473	-	DNA primase
3409	 55.75	0	3800531..3802372	+	613	152971991	rpoD	KPN_03474	-	RNA polymerase sigma factor RpoD
3410	 63.31	0	3802472..3802978	-	168	152971992	ygjF	KPN_03475	-	G/U mismatch-specific DNA glycosylase
3411	 53.30	0	3803622..3804788	-	388	152973322	-	KPN_04858	-	putative prophage tail protein
3412	 53.96	0	3804788..3805267	-	159	152973323	-	KPN_04859	-	putative prophage tail protein
3413	 55.64	0	3805284..3807722	-	812	152973324	-	KPN_04860	-	putative prophage tail length determinator
3414	 54.35	0	3807715..3807852	-	45	152973325	-	KPN_04861	-	putative prophage tail protein
3415	 53.62	0	3807867..3808142	-	91	152973326	-	KPN_04862	-	putative prophage tail protein
3416	 56.59	0	3808203..3808718	-	171	152973327	-	KPN_04863	-	putative prophage tail tube protein
3417	 57.95	0	3808732..3809913	-	393	152973328	-	KPN_04864	-	putative prophage tail sheath
3418	 55.77	0	3810023..3811087	-	354	152973329	-	KPN_04865	-	putative prophage tail fibre protein
3419	 52.33	0	3811254..3813833	-	859	152973330	-	KPN_04866	-	putative prophage endo-N-neuraminidase
3420	 50.92	-1	3813838..3814434	-	198	152973331	-	KPN_04867	-	putative prophage tail protein
3421	 57.32	0	3814427..3815335	-	302	152973332	-	KPN_04868	-	putative prophage baseplate assembly protein
3422	 57.76	0	3815340..3815687	-	115	152973333	-	KPN_04869	-	putative prophage baseplate protein
3423	 61.84	0	3815684..3816325	-	213	152973334	-	KPN_04870	-	putative prophage baseplate assembly protein
3424	 31.34	-2	3816585..3817688	-	367	152973335	-	KPN_04871	-	putative prophage protein
3425	 58.00	0	3818039..3818488	-	149	152973336	-	KPN_04872	-	putative prophage, tail completion protein
3426	 54.09	0	3818481..3818957	-	158	152973337	-	KPN_04873	-	putative prophage, tail completion protein
3427	 57.41	0	3819044..3819475	-	143	152973338	-	KPN_04874	-	putative prophage P2 LysB-like protein
3428	 58.63	0	3819472..3819969	-	165	152973339	-	KPN_04875	-	putative prophage endolysin, control of lysis
3429	 58.08	0	3819956..3820246	-	96	152973340	-	KPN_04876	-	putative prophage holin
3430	 60.29	0	3820251..3820454	-	67	152973341	-	KPN_04877	-	putative prophage tail component protein
3431	 58.97	0	3820454..3820960	-	168	152973342	-	KPN_04878	-	putative prophage phage head completion protein
3432	 61.11	0	3821057..3821776	-	239	152973343	-	KPN_04879	-	putative prophage small terminase subunit
3433	 53.45	0	3821804..3822862	-	352	152973344	-	KPN_04880	-	putative prophage major capsid protein
3434	 54.85	0	3822936..3823790	-	284	152973345	-	KPN_04881	-	putative prophage capsid scaffolding protein
3435	 58.36	0	3823956..3825725	+	589	152973346	-	KPN_04882	-	putative prophage large terminase protein
3436	 56.23	0	3825725..3826768	+	347	152973347	-	KPN_04883	-	putative prophage presumed portal protein
3437	 37.58	-2	3827084..3827743	-	219	152973348	-	KPN_04884	-	putative prophage protein
3438	 41.80	-2	3827828..3828559	-	243	152973349	-	KPN_04885	-	putative prophage protein
3439	 44.72	-2	3828642..3829124	-	160	152973350	-	KPN_04886	-	putative prophage protein
3440	 52.83	0	3829192..3831012	-	606	152973351	-	KPN_04887	-	putative prophage protein
3441	 55.41	0	3831416..3831637	-	73	152973352	-	KPN_04888	-	putative prophage protein
3442	 50.00	-1	3831637..3831864	-	75	152973353	-	KPN_04889	-	putative prophage protein
3443	 46.90	-1	3831932..3832270	-	112	152973354	-	KPN_04890	-	putative prophage protein
3444	 53.53	0	3832442..3832951	-	169	152973355	-	KPN_04891	-	putative prophage protein for establishment of lysogeny
3445	 51.14	-1	3832982..3833245	-	87	152973356	-	KPN_04892	-	putative prophage excisionase
3446	 44.10	-2	3833375..3833950	+	191	152973357	-	KPN_04893	-	putative prophage repressor protein CI
3447	 47.72	-1	3833950..3834957	+	335	152973358	int	KPN_04894	-	putative prophage gp Int for integrase
3448	 35.25	-2	3834954..3835787	+	277	152971993	-	KPN_03477	-	hypothetical protein
3449	 59.34	0	3836493..3836765	+	90	152971994	-	KPN_03478	-	hypothetical protein
3450	 59.45	0	3836834..3837124	-	96	152971995	hdeB	KPN_03479	-	hypothetical protein
3451	 51.38	-1	3837501..3838115	+	204	152971996	evgA	KPN_03480	-	DNA-binding transcriptional activator EvgA
3452	 60.04	0	3838120..3841362	+	1080	152971997	evgS	KPN_03481	-	putative sensor protein EvgS1
3453	 56.41	0	3841453..3842115	-	220	152971998	yfdX	KPN_03482	-	hypothetical protein
3454	 51.81	-1	3842434..3842931	+	165	152971999	hdeD	KPN_03483	-	acid-resistance membrane protein
3455	 51.31	-1	3842958..3843263	+	101	152972000	hdeB	KPN_03484	-	acid-resistance protein
3456	 61.57	0	3843315..3844118	-	267	152972001	glpF	KPN_03485	-	putative major Intrinsic protein channel, glycerol diffusion
3457	 64.14	+1	3844172..3845995	-	607	152972002	orfZ	KPN_03486	-	glycerol dehyrdratase activator
3458	 61.74	0	3846008..3846433	-	141	152972003	dhaB3	KPN_03487	-	glycerol dehydratase
3459	 59.66	0	3846436..3847020	-	194	152972004	dhaB2	KPN_03488	-	glycerol dehydratase
3460	 60.73	0	3847033..3848700	-	555	152972005	dhaB1	KPN_03489	-	glycerol dehydratase
3461	 53.01	0	3849111..3849542	+	143	152972006	orfY	KPN_03490	-	hypothetical protein
3462	 61.17	0	3849564..3850727	+	387	152972007	dhaT	KPN_03491	-	1,3-propanediol oxidoreductase
3463	 64.03	+1	3851102..3851632	+	176	152972008	orfW	KPN_03492	-	hypothetical protein
3464	 61.20	0	3851610..3853457	-	615	152972009	dhaR	KPN_03493	-	DNA-binding transcriptional regulator DhaR
3465	 59.20	0	3853637..3854734	-	365	152972010	dhaD	KPN_03494	-	putative glycerol dehydrogenase
3466	 60.50	0	3855345..3856415	+	356	152972011	dhaK	KPN_03495	-	dihydroxyacetone kinase subunit DhaK
3467	 61.14	0	3856426..3857058	+	210	152972012	dhaL	KPN_03496	-	dihydroxyacetone kinase ADP-binding subunit
3468	 63.43	0	3857069..3858490	+	473	152972013	dhaM	KPN_03497	-	dihydroxyacetone kinase subunit M
3469	 64.55	+1	3858566..3860215	+	549	152972014	dhaK	KPN_03498	-	dihydroxyacetone kinase N-terminal domain-containing protein
3470	 61.78	0	3860371..3861147	-	258	152972015	yqjH	KPN_03499	-	putative enzyme, ferredoxin reductase-like, FAD-linked, NADP-linked
3471	 61.44	0	3861385..3861939	+	184	152972016	yqjI	KPN_03500	-	hypothetical protein
3472	 60.08	0	3862287..3863576	+	429	152972017	ygjG	KPN_03501	-	putrescine--2-oxoglutarate aminotransferase
3473	 55.56	0	3863623..3863919	-	98	152972018	yneC	KPN_03502	-	autoinducer-2 (AI-2) modifying protein LsrG
3474	 59.80	0	3863916..3864803	-	295	152972019	yneB	KPN_03503	-	aldolase
3475	 58.78	0	3864815..3865816	-	333	152972020	yneA	KPN_03504	-	putative LACI-type transcriptional regulator
3476	 62.06	0	3865818..3866816	-	332	152972021	ydeZ	KPN_03505	-	putative ABC transport system permease protein
3477	 63.00	0	3866817..3867851	-	344	152972022	ydeY	KPN_03506	-	putative ABC transport system permease protein
3478	 61.84	0	3867848..3869338	-	496	152972023	ego	KPN_03507	-	putative ATP-binding component of a transport system
3479	 64.51	+1	3869554..3870525	+	323	152972024	ydeW	KPN_03508	-	SorC family transcriptional regulator
3480	 63.98	+1	3870563..3872161	+	532	152972025	ydeV	KPN_03509	-	autoinducer-2 (AI-2) kinase
3481	 62.96	0	3872344..3874365	+	673	152972026	fadH	KPN_03510	-	2,4-dieonyl-CoA reductase, FMN-linked
3482	 58.71	0	3874474..3875604	-	376	152972027	ygjO	KPN_03511	-	putative enzyme
3483	 65.40	+1	3875690..3876397	-	235	152972028	-	KPN_03512	-	hypothetical protein
3484	 62.69	0	3876441..3877043	+	200	152972029	-	KPN_03513	-	helix-turn-helix motif-containing protein
3485	 54.49	0	3877063..3877563	+	166	152972030	ygjP	KPN_03514	-	hypothetical protein
3486	 56.87	0	3877637..3878626	+	329	152972031	ygjR	KPN_03515	-	putative NAD(P)-binding dehydrogenase
3487	 58.85	0	3878898..3879869	+	323	152972032	ygjT	KPN_03516	-	putative transmembrane protein
3488	 60.50	0	3880136..3881383	+	415	152972033	ygjU	KPN_03517	-	serine/threonine transporter SstT
3489	 57.48	0	3881399..3881953	-	184	152972034	ygjV	KPN_03518	-	hypothetical protein
3490	 58.27	0	3882083..3883570	-	495	152972035	uxaA	KPN_03519	-	altronate hydrolase
3491	 55.82	0	3883589..3884989	-	466	152972036	uxaC	KPN_03520	-	glucuronate isomerase
3492	 60.06	0	3885482..3886783	+	433	152972037	exuT	KPN_03521	-	major facilitator superfamily hexuronate transport protein
3493	 53.02	0	3886911..3887687	+	258	152972038	exuR	KPN_03522	-	DNA-binding transcriptional repressor ExuR
3494	 54.60	0	3888028..3888690	+	220	152972039	yqjA	KPN_03523	-	putative integral membrane protein
3495	 61.50	0	3888690..3889076	+	128	152972040	yqjB	KPN_03524	-	hypothetical protein
3496	 49.59	-1	3889226..3889594	+	122	152972041	yqjC	KPN_03525	-	hypothetical protein
3497	 56.54	0	3889640..3889945	+	101	152972042	yqjD	KPN_03526	-	hypothetical protein
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.