IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3319	 49.24	-1	3706353..3707006	-	217	152971901	-	KPN_03383	-	DNA-binding transcriptional regulator CsgD
3320	 60.65	0	3707355..3708335	-	326	152971902	yggR	KPN_03384	-	hypothetical protein
3321	 57.55	0	3708352..3709053	+	233	152971903	yggS	KPN_03385	-	PLP-binding domain-containing protein
3322	 55.91	0	3709074..3709640	+	188	152971904	yggT	KPN_03386	-	hypothetical protein
3323	 57.04	0	3709637..3709927	+	96	152971905	yggU	KPN_03387	-	hypothetical protein
3324	 60.77	0	3709940..3710533	+	197	152971906	yggV	KPN_03388	-	putative deoxyribonucleotide triphosphate pyrophosphatase
3325	 60.86	0	3710526..3711662	+	378	152971907	yggW	KPN_03389	-	coproporphyrinogen III oxidase
3326	 59.03	0	3711703..3712422	-	239	152971908	yggN	KPN_03390	-	hypothetical protein
3327	 53.21	0	3712473..3712799	-	108	152971909	yggL	KPN_03391	-	hypothetical protein
3328	 55.97	0	3712799..3713518	-	239	152971910	yggH	KPN_03392	-	tRNA (guanine-N(7))-methyltransferase
3329	 59.30	0	3713655..3714713	+	352	152971911	mutY	KPN_03393	-	adenine DNA glycosylase
3330	 52.54	0	3714742..3715017	+	91	152971912	yggX	KPN_03394	-	hypothetical protein
3331	 57.46	0	3715064..3716149	+	361	152971913	mltC	KPN_03395	-	murein transglycosylase C
3332	 56.38	0	3716341..3717594	+	417	152971914	nupG	KPN_03396	-	MFS family nucleoside transporter
3333	 60.14	0	3717638..3719767	-	709	152971915	speC	KPN_03397	-	ornithine decarboxylase
3334	 57.71	0	3720229..3720909	+	226	152971916	yqgA	KPN_03398	-	putative transport protein
3335	 59.95	0	3721890..3722753	+	287	152971917	int	KPN_03400	-	putative phage integrase
3336	 55.67	0	3725589..3728198	-	869	152971918	fim	KPN_03401	-	putative fimbrial biogenesis outer membrane usher protein
3337	 47.40	-1	3728230..3728940	-	236	152971919	fim	KPN_03402	-	putative pili assembly chaperone
3338	 48.68	-1	3729003..3729797	-	264	152971920	fim	KPN_03403	-	putative fimbrial chaperone
3339	 48.01	-1	3729790..3730368	-	192	152971921	fim	KPN_03404	-	putative fimbrial-like protein
3340	 54.96	0	3730387..3730890	-	167	152971922	fim	KPN_03405	-	putative fimbrial-like protein
3341	 54.92	0	3730919..3731650	-	243	152971923	fim	KPN_03406	-	putative fimbrial chaperone
3342	 50.00	-1	3731701..3732216	-	171	152971924	fim	KPN_03407	-	putative fimbrial-like protein
3343	 38.19	-2	3732648..3732791	+	47	152971925	-	KPN_03408	-	hypothetical protein
3344	 60.98	0	3733931..3735301	+	456	152971926	-	KPN_03409	-	putative pyridoxal-5'-phosphate-dependent enzyme, beta subunit
3345	 63.62	0	3735312..3736460	+	382	152971927	metB	KPN_03410	-	putative cystathionine gamma-synthase
3346	 66.45	+1	3736461..3737372	-	303	152971928	yhcS	KPN_03411	-	LysR family transcriptional regulator
3347	 62.19	0	3737470..3738072	+	200	152971929	-	KPN_03412	-	short chain dehydrogenase
3348	 53.91	0	3738159..3738503	+	114	152971930	-	KPN_03413	-	hypothetical protein
3349	 43.39	-2	3738703..3738891	+	62	152971931	-	KPN_03414	-	hypothetical protein
3350	 59.39	0	3739068..3740249	-	393	152971932	-	KPN_03415	-	putative aminotransferase
3351	 57.07	0	3740395..3742260	-	621	152971933	gss	KPN_03416	-	bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase
3352	 40.48	-2	3742358..3742483	+	41	152971934	-	KPN_03417	-	hypothetical protein
3353	 61.32	0	3742480..3743040	+	186	152971935	-	KPN_03418	-	hypothetical protein
3354	 60.55	0	3743088..3743954	+	288	152971936	yghU	KPN_03419	-	putative glutathione S-transferase YghU
3355	 55.90	0	3744027..3744314	-	95	152971937	yghW	KPN_03420	-	hypothetical protein
3356	 57.55	0	3744393..3745280	-	295	152971938	-	KPN_03421	-	putative enzyme
3357	 50.10	-1	3745402..3745896	-	164	152971939	yqhA	KPN_03422	-	hypothetical protein
3358	 57.09	0	3746003..3747526	-	507	152971940	-	KPN_03423	-	putative glycoside hydrolase
3359	 52.95	0	3747540..3748910	-	456	152971941	-	KPN_03424	-	putative permease
3360	 54.69	0	3749163..3749588	-	141	152971942	exbD	KPN_03425	-	biopolymer transport protein ExbD
3361	 60.39	0	3749595..3750311	-	238	152971943	exbB	KPN_03426	-	biopolymer transport protein ExbB
3362	 43.06	-2	3750319..3750534	-	71	152971944	-	KPN_03427	-	hypothetical protein
3363	 60.35	0	3750577..3751764	+	395	152971945	metC	KPN_03428	-	cystathionine beta-lyase
3364	 59.39	0	3751896..3752555	+	219	152971946	yghB	KPN_03429	-	putative integral membrane protein
3365	 55.69	0	3752605..3753369	-	254	152971947	yqhC	KPN_03430	-	putative ARAC-type regulatory protein
3366	 59.36	0	3753701..3754864	+	387	152971948	yqhD	KPN_03431	-	putative alcohol dehydrogenase
3367	 57.73	0	3755010..3755837	+	275	152971949	dkgA	KPN_03432	-	2,5-diketo-D-gluconate reductase A
3368	 56.25	0	3755873..3756400	-	175	152971950	-	KPN_03433	-	hypothetical protein
3369	 59.35	0	3756458..3758548	-	696	152971951	ygiR	KPN_03434	-	hypothetical protein
3370	 63.69	+1	3758765..3760177	-	470	152971952	sufI	KPN_03435	-	repressor protein for FtsI
3371	 53.70	0	3760261..3760923	-	220	152971953	plsC	KPN_03436	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
3372	 59.36	0	3761190..3763448	-	752	152971954	parC	KPN_03437	-	DNA topoisomerase IV subunit A
3373	 57.82	0	3763569..3764438	-	289	152971955	ygiV	KPN_03438	-	hypothetical protein
3374	 56.31	0	3764516..3764911	-	131	152971956	ygiW	KPN_03439	-	hypothetical protein
3375	 61.36	0	3765062..3765721	+	219	152971957	ygiX	KPN_03440	-	DNA-binding transcriptional regulator QseB
3376	 64.98	+1	3766178..3767065	+	295	152971958	ygiY	KPN_03441	-	putative 2-component sensor protein
3377	 53.61	0	3767172..3767753	+	193	152971959	mdaB	KPN_03442	-	modulator of drug activity B
3378	 59.37	0	3767834..3768148	+	104	152971960	ygiN	KPN_03443	-	hypothetical protein
3379	 59.23	0	3768221..3770116	-	631	152971961	parE	KPN_03444	-	DNA topoisomerase IV subunit B
3380	 57.29	0	3770147..3770722	-	191	152971962	yqiA	KPN_03445	-	esterase YqiA
3381	 60.93	0	3770722..3771453	-	243	152971963	cpdA	KPN_03446	-	cyclic 3',5'-adenosine monophosphate phosphodiesterase
3382	 52.48	0	3771574..3771996	-	140	152971964	yqiB	KPN_03447	-	hypothetical protein
3383	 53.71	0	3771993..3772625	-	210	152971965	yqiE	KPN_03448	-	ADP-ribose pyrophosphatase NudF
3384	 56.80	0	3772816..3774294	+	492	152971966	tolC	KPN_03449	-	outer membrane channel protein
3385	 63.69	+1	3774462..3775133	+	223	152971967	ygiB	KPN_03450	-	hypothetical protein
3386	 56.68	0	3775139..3776299	+	386	152971968	ygiC	KPN_03451	-	putative glutathione-like synthetase
3387	 62.10	0	3776344..3777087	-	247	152971969	ygiD	KPN_03452	-	hypothetical protein
3388	 62.15	0	3777340..3778092	+	250	152971970	ygiE	KPN_03453	-	zinc transporter ZupT
3389	 60.70	0	3778154..3778807	-	217	152971971	ribB	KPN_03454	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
3390	 58.24	0	3779185..3779457	+	90	152971972	yqiC	KPN_03455	-	hypothetical protein
3391	 61.51	0	3779909..3781342	-	477	152971973	rfaE	KPN_03456	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
3392	 63.78	+1	3781401..3784238	-	945	152971974	glnE	KPN_03457	-	bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase
3393	 63.28	0	3784259..3785557	-	432	152971975	ygiF	KPN_03458	-	hypothetical protein
3394	 56.36	0	3785772..3786392	+	206	152971976	ygiM	KPN_03459	-	putative signal transduction protein
3395	 64.33	+1	3786454..3787695	+	413	152971977	cca	KPN_03460	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
3396	 55.84	0	3787707..3788528	-	273	152971978	uppP	KPN_03461	-	undecaprenyl pyrophosphate phosphatase
3397	 51.56	-1	3788727..3789110	-	127	152971979	ygiG	KPN_03462	-	bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase
3398	 61.65	0	3789218..3789835	+	205	152971980	ygiH	KPN_03463	-	putative glycerol-3-phosphate acyltransferase PlsY
3399	 63.76	+1	3790233..3791057	+	274	152971981	ureD	KPN_03464	-	urease accessory protein ureD
3400	 61.72	0	3791067..3791369	+	100	152971982	-	KPN_03465	-	urease subunit gamma
3401	 62.62	0	3791379..3791699	+	106	152971983	-	KPN_03466	-	urease subunit beta
3402	 63.32	0	3791692..3793395	+	567	152971984	-	KPN_03467	-	urease subunit alpha
3403	 62.05	0	3793405..3793881	+	158	152971985	ureE	KPN_03468	-	urease accessory protein UreE
3404	 67.41	+1	3793883..3794557	+	224	152971986	ureF	KPN_03469	-	urease accessory protein ureF
3405	 59.71	0	3794566..3795183	+	205	152971987	ureG	KPN_03470	-	urease accessory protein ureG
3406	 63.31	0	3796989..3798002	-	337	152971988	ygjD	KPN_03471	-	O-sialoglycoprotein endopeptidase
3407	 51.39	-1	3798240..3798455	+	71	152971989	rpsU	KPN_03472	-	30S ribosomal protein S21
3408	 56.99	0	3798567..3800312	+	581	152971990	dnaG	KPN_03473	-	DNA primase
3409	 55.75	0	3800531..3802372	+	613	152971991	rpoD	KPN_03474	-	RNA polymerase sigma factor RpoD
3410	 63.31	0	3802472..3802978	-	168	152971992	ygjF	KPN_03475	-	G/U mismatch-specific DNA glycosylase
3411	 53.30	0	3803622..3804788	-	388	152973322	-	KPN_04858	-	putative prophage tail protein
3412	 53.96	0	3804788..3805267	-	159	152973323	-	KPN_04859	-	putative prophage tail protein
3413	 55.64	0	3805284..3807722	-	812	152973324	-	KPN_04860	-	putative prophage tail length determinator
3414	 54.35	0	3807715..3807852	-	45	152973325	-	KPN_04861	-	putative prophage tail protein
3415	 53.62	0	3807867..3808142	-	91	152973326	-	KPN_04862	-	putative prophage tail protein
3416	 56.59	0	3808203..3808718	-	171	152973327	-	KPN_04863	-	putative prophage tail tube protein
3417	 57.95	0	3808732..3809913	-	393	152973328	-	KPN_04864	-	putative prophage tail sheath
3418	 55.77	0	3810023..3811087	-	354	152973329	-	KPN_04865	-	putative prophage tail fibre protein
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.