IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3252	 59.80	0	3635178..3635891	-	237	152971834	ygeR	KPN_03316	-	putative lipoprotein
3253	 61.08	0	3636208..3636762	+	184	152971835	idi	KPN_03317	-	isopentenyl-diphosphate delta-isomerase
3254	 56.32	0	3636997..3638514	-	505	152971836	lysS	KPN_03318	-	lysyl-tRNA synthetase
3255	 57.42	0	3638524..3639486	-	320	152971837	prfB	KPN_03319	-	peptide chain release factor 2
3256	 63.49	0	3639708..3641441	-	577	152971838	recJ	KPN_03320	-	ssDNA exonuclease RecJ
3257	 58.12	0	3641447..3642160	-	237	152971839	dsbC	KPN_03321	-	thiol:disulfide interchange protein DsbC
3258	 61.87	0	3642183..3643079	-	298	152971840	xerD	KPN_03322	-	site-specific tyrosine recombinase XerD
3259	 57.66	0	3643180..3643701	+	173	152971841	fldB	KPN_03323	-	flavodoxin FldB
3260	 63.26	0	3643708..3644118	-	136	152971842	ygfX	KPN_03324	-	hypothetical protein
3261	 53.18	0	3644099..3644365	-	88	152971843	ygfY	KPN_03325	-	hypothetical protein
3262	 62.12	0	3644605..3645594	+	329	152971844	ygfZ	KPN_03326	-	putative global regulator
3263	 57.12	0	3645693..3646352	-	219	152971845	yqfA	KPN_03327	-	putative oxidoreductase
3264	 53.85	0	3646516..3646827	-	103	152971846	yqfB	KPN_03328	-	hypothetical protein
3265	 51.44	-1	3646877..3647605	+	242	152971847	-	KPN_03329	-	putative regulator
3266	 57.74	0	3647724..3649157	+	477	152971848	bglA	KPN_03330	-	6-phospho-beta-glucosidase A
3267	 51.59	-1	3649158..3649283	-	41	152971849	-	KPN_03331	-	hypothetical protein
3268	 62.78	0	3649282..3649641	+	119	152971850	scsA	KPN_03332	-	suppression of copper sensitivity: putative copper binding protein
3269	 65.17	+1	3649691..3651700	+	669	152971851	scsB	KPN_03333	-	suppression of copper sensitivity protein
3270	 54.58	0	3651702..3652313	+	203	152971852	scsC	KPN_03334	-	suppression of copper sensitivity protein
3271	 63.49	0	3652303..3652806	+	167	152971853	scsD	KPN_03335	-	hypothetical protein
3272	 48.66	-1	3652949..3653470	+	173	152971854	-	KPN_03336	-	hypothetical protein
3273	 50.89	-1	3653527..3654312	+	261	152971855	-	KPN_03337	-	transposase
3274	 63.58	0	3654376..3655119	-	247	152971856	ygfF	KPN_03338	-	hypothetical protein
3275	 60.93	0	3655182..3658055	-	957	152971857	gcvP	KPN_03339	-	glycine dehydrogenase
3276	 56.67	0	3658262..3658651	-	129	152971858	gcvH	KPN_03340	-	glycine cleavage system protein H
3277	 59.91	0	3658676..3659770	-	364	152971859	gcvT	KPN_03341	-	glycine cleavage system aminomethyltransferase T
3278	 61.60	0	3660193..3661395	-	400	152971860	visC	KPN_03342	-	hypothetical protein
3279	 66.33	+1	3661406..3662584	-	392	152971861	ubiH	KPN_03343	-	2-octaprenyl-6-methoxyphenyl hydroxylase
3280	 58.69	0	3662581..3663897	-	438	152971862	pepP	KPN_03344	-	proline aminopeptidase P II
3281	 55.61	0	3663921..3664499	-	192	152971863	ygfB	KPN_03345	-	hypothetical protein
3282	 49.70	-1	3664666..3664995	+	109	152971864	ygfE	KPN_03346	-	Z-ring-associated protein
3283	 62.14	0	3665319..3665915	+	198	152971865	ygfA	KPN_03347	-	putative ligase
3284	 57.18	0	3665999..3667231	-	410	152971866	serA	KPN_03348	-	D-3-phosphoglycerate dehydrogenase
3285	 59.85	0	3667501..3668160	-	219	152971867	rpiA	KPN_03349	-	ribose-5-phosphate isomerase A
3286	 60.74	0	3668328..3669221	+	297	152971868	iciA	KPN_03350	-	chromosome replication initiation inhibitor protein
3287	 58.98	0	3669275..3670042	-	255	152971869	yggE	KPN_03351	-	hypothetical protein
3288	 55.82	0	3670132..3670767	-	211	152971870	yggA	KPN_03352	-	arginine exporter protein
3289	 57.23	0	3670919..3671776	-	285	152971871	yggB	KPN_03353	-	mechanosensitive channel MscS
3290	 54.91	0	3671967..3673046	-	359	152971872	fbaA	KPN_03354	-	fructose-bisphosphate aldolase
3291	 55.70	0	3673144..3674292	-	382	152971873	pgk	KPN_03355	-	phosphoglycerate kinase
3292	 55.98	0	3674347..3675375	-	342	152971874	epd	KPN_03356	-	erythrose 4-phosphate dehydrogenase
3293	 60.90	0	3675760..3677754	-	664	152971875	tktA	KPN_03357	-	transketolase
3294	 59.20	0	3678096..3678791	+	231	152971876	yggG	KPN_03358	-	hypothetical protein
3295	 55.71	0	3679169..3680437	+	422	152971877	-	KPN_03359	-	putative outer membrane protein
3296	 62.64	0	3680574..3682214	-	546	152971878	-	KPN_03360	-	hypothetical protein
3297	 61.84	0	3682228..3683697	-	489	152971879	-	KPN_03361	-	putative aldehyde dehydrogenase
3298	 63.41	0	3683713..3684480	-	255	152971880	-	KPN_03362	-	L-aspartate dehydrogenase
3299	 60.88	0	3684487..3685281	-	264	152971881	-	KPN_03363	-	short chain dehydrogenase
3300	 63.95	+1	3685265..3686038	-	257	152971882	-	KPN_03364	-	putative hydrolase
3301	 59.98	0	3686586..3687842	-	418	152971883	-	KPN_03365	-	major facilitator superfamily permease
3302	 62.99	0	3687869..3689065	-	398	152971884	-	KPN_03366	-	putative ferredoxin reductase subunit
3303	 60.30	0	3689062..3689988	-	308	152971885	-	KPN_03367	-	putative glyoxalase/bleomycin resistance protein/dioxygenas
3304	 59.06	0	3690077..3690865	-	262	152971886	-	KPN_03368	-	putative regulatory proteins, IclR
3305	 62.13	0	3690879..3691628	-	249	152971887	-	KPN_03369	-	short chain dehydrogenase
3306	 58.85	0	3691628..3692650	-	340	152971888	-	KPN_03370	-	3-phenylpropionate dioxygenase, alpha subunit
3307	 52.47	0	3692966..3693289	-	107	152971889	-	KPN_03371	-	putative ferredoxin
3308	 61.76	0	3694020..3694937	+	305	152971890	-	KPN_03372	-	putative transport protein
3309	 60.26	0	3695065..3695985	-	306	152971891	speB	KPN_03373	-	agmatinase
3310	 60.04	0	3696219..3698195	-	658	152971892	speA	KPN_03374	-	arginine decarboxylase
3311	 57.23	0	3699037..3700191	+	384	152971893	metK	KPN_03375	-	S-adenosylmethionine synthetase
3312	 58.06	0	3700578..3701972	+	464	152971894	galP	KPN_03376	-	galactose-proton symport of transport system
3313	 61.08	0	3702050..3702550	+	166	152971895	sprT	KPN_03377	-	hypothetical protein
3314	 55.65	0	3702645..3703352	+	235	152971896	endA	KPN_03378	-	DNA-specific endonuclease I
3315	 58.88	0	3703444..3704175	+	243	152971897	yggJ	KPN_03379	-	hypothetical protein
3316	 57.20	0	3704196..3705146	+	316	152971898	gshB	KPN_03380	-	glutathione synthetase
3317	 55.67	0	3705321..3705884	+	187	152971899	yqgE	KPN_03381	-	hypothetical protein
3318	 57.79	0	3705884..3706300	+	138	152971900	yqgF	KPN_03382	-	Holliday junction resolvase-like protein
3319	 49.24	-1	3706353..3707006	-	217	152971901	-	KPN_03383	-	DNA-binding transcriptional regulator CsgD
3320	 60.65	0	3707355..3708335	-	326	152971902	yggR	KPN_03384	-	hypothetical protein
3321	 57.55	0	3708352..3709053	+	233	152971903	yggS	KPN_03385	-	PLP-binding domain-containing protein
3322	 55.91	0	3709074..3709640	+	188	152971904	yggT	KPN_03386	-	hypothetical protein
3323	 57.04	0	3709637..3709927	+	96	152971905	yggU	KPN_03387	-	hypothetical protein
3324	 60.77	0	3709940..3710533	+	197	152971906	yggV	KPN_03388	-	putative deoxyribonucleotide triphosphate pyrophosphatase
3325	 60.86	0	3710526..3711662	+	378	152971907	yggW	KPN_03389	-	coproporphyrinogen III oxidase
3326	 59.03	0	3711703..3712422	-	239	152971908	yggN	KPN_03390	-	hypothetical protein
3327	 53.21	0	3712473..3712799	-	108	152971909	yggL	KPN_03391	-	hypothetical protein
3328	 55.97	0	3712799..3713518	-	239	152971910	yggH	KPN_03392	-	tRNA (guanine-N(7))-methyltransferase
3329	 59.30	0	3713655..3714713	+	352	152971911	mutY	KPN_03393	-	adenine DNA glycosylase
3330	 52.54	0	3714742..3715017	+	91	152971912	yggX	KPN_03394	-	hypothetical protein
3331	 57.46	0	3715064..3716149	+	361	152971913	mltC	KPN_03395	-	murein transglycosylase C
3332	 56.38	0	3716341..3717594	+	417	152971914	nupG	KPN_03396	-	MFS family nucleoside transporter
3333	 60.14	0	3717638..3719767	-	709	152971915	speC	KPN_03397	-	ornithine decarboxylase
3334	 57.71	0	3720229..3720909	+	226	152971916	yqgA	KPN_03398	-	putative transport protein
3335	 59.95	0	3721890..3722753	+	287	152971917	int	KPN_03400	-	putative phage integrase
3336	 55.67	0	3725589..3728198	-	869	152971918	fim	KPN_03401	-	putative fimbrial biogenesis outer membrane usher protein
3337	 47.40	-1	3728230..3728940	-	236	152971919	fim	KPN_03402	-	putative pili assembly chaperone
3338	 48.68	-1	3729003..3729797	-	264	152971920	fim	KPN_03403	-	putative fimbrial chaperone
3339	 48.01	-1	3729790..3730368	-	192	152971921	fim	KPN_03404	-	putative fimbrial-like protein
3340	 54.96	0	3730387..3730890	-	167	152971922	fim	KPN_03405	-	putative fimbrial-like protein
3341	 54.92	0	3730919..3731650	-	243	152971923	fim	KPN_03406	-	putative fimbrial chaperone
3342	 50.00	-1	3731701..3732216	-	171	152971924	fim	KPN_03407	-	putative fimbrial-like protein
3343	 38.19	-2	3732648..3732791	+	47	152971925	-	KPN_03408	-	hypothetical protein
3344	 60.98	0	3733931..3735301	+	456	152971926	-	KPN_03409	-	putative pyridoxal-5'-phosphate-dependent enzyme, beta subunit
3345	 63.62	0	3735312..3736460	+	382	152971927	metB	KPN_03410	-	putative cystathionine gamma-synthase
3346	 66.45	+1	3736461..3737372	-	303	152971928	yhcS	KPN_03411	-	LysR family transcriptional regulator
3347	 62.19	0	3737470..3738072	+	200	152971929	-	KPN_03412	-	short chain dehydrogenase
3348	 53.91	0	3738159..3738503	+	114	152971930	-	KPN_03413	-	hypothetical protein
3349	 43.39	-2	3738703..3738891	+	62	152971931	-	KPN_03414	-	hypothetical protein
3350	 59.39	0	3739068..3740249	-	393	152971932	-	KPN_03415	-	putative aminotransferase
3351	 57.07	0	3740395..3742260	-	621	152971933	gss	KPN_03416	-	bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.