IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3159	 61.98	0	3530605..3531819	+	404	152971741	pduW	KPN_03222	-	propionate kinase
3160	 66.11	+1	3531875..3532777	+	300	152971742	pduX	KPN_03223	-	propanediol utilization
3161	 65.00	+1	3532781..3533857	-	358	152971743	cobD	KPN_03224	-	threonine-phosphate decarboxylase
3162	 60.45	0	3533875..3535128	-	417	152971744	amiC	KPN_03225	-	N-acetylmuramoyl-L-alanine amidase
3163	 58.26	0	3535356..3536687	+	443	152971745	argA	KPN_03226	-	N-acetylglutamate synthase
3164	 56.07	0	3536917..3537237	+	106	152971746	-	KPN_03227	-	hypothetical protein
3165	 68.13	+1	3537295..3539139	-	614	152971747	recD	KPN_03228	-	exonuclease V subunit alpha
3166	 64.12	+1	3539136..3542672	-	1178	152971748	recB	KPN_03229	-	exonuclease V subunit beta
3167	 59.60	0	3542669..3545554	-	961	152971749	ptr	KPN_03230	-	protease III
3168	 62.46	0	3545675..3549004	-	1109	152971750	recC	KPN_03231	-	exonuclease V subunit gamma
3169	 62.96	0	3549065..3549388	-	107	152971751	ppdC	KPN_03232	-	hypothetical protein
3170	 66.92	+1	3549373..3549762	-	129	152971752	ygdB	KPN_03233	-	hypothetical protein
3171	 69.18	+1	3549777..3550334	-	185	152971753	ppdB	KPN_03234	-	hypothetical protein
3172	 63.59	0	3550331..3550882	-	183	152971754	ppdA	KPN_03235	-	hypothetical protein
3173	 57.74	0	3551066..3551860	-	264	152971755	thyA	KPN_03236	-	thymidylate synthase
3174	 59.13	0	3551867..3552742	-	291	152971756	lgt	KPN_03237	-	prolipoprotein diacylglyceryl transferase
3175	 62.75	0	3552988..3555234	-	748	152971757	ptsP	KPN_03238	-	fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain
3176	 53.48	0	3555247..3555777	-	176	152971758	ygdP	KPN_03239	-	dinucleoside polyphosphate hydrolase
3177	 64.94	+1	3556460..3557155	+	231	152971759	mutH	KPN_03240	-	DNA mismatch repair protein
3178	 54.90	0	3557219..3557932	+	237	152971760	ygdQ	KPN_03241	-	putative transmembrane protein, transport
3179	 47.49	-1	3558056..3558274	+	72	152971761	ygdR	KPN_03242	-	hypothetical protein
3180	 60.33	0	3558495..3559535	+	346	152971762	tas	KPN_03243	-	putative aldo-keto reductase
3181	 62.90	0	3559638..3560831	-	397	152971763	ygeD	KPN_03244	-	hypothetical protein
3182	 60.79	0	3560824..3562983	-	719	152971764	aas	KPN_03245	-	bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase
3183	 63.23	0	3563605..3564621	+	338	152971765	galR	KPN_03246	-	DNA-binding transcriptional regulator GalR
3184	 65.42	+1	3564582..3565061	-	159	152971766	-	KPN_03247	-	putative acyltransferase
3185	 61.37	0	3565058..3565831	-	257	152971767	-	KPN_03248	-	putative regulatory protein, GntR
3186	 58.75	0	3565899..3567326	-	475	152971768	-	KPN_03249	-	glycoside hydrolase family protein 1
3187	 57.92	0	3567334..3568671	-	445	152971769	-	KPN_03250	-	putative phosphotransferase system, EIIC
3188	 59.15	0	3568962..3569972	+	336	152971770	-	KPN_03251	-	putative transcriptional regulator
3189	 63.18	0	3569965..3571227	-	420	152971771	lysA	KPN_03252	-	diaminopimelate decarboxylase
3190	 65.70	+1	3571364..3572290	+	308	152971772	lysR	KPN_03253	-	DNA-binding transcriptional regulator LysR
3191	 62.46	0	3572256..3572969	-	237	152971773	ygeA	KPN_03254	-	putative racemase
3192	 56.88	0	3573109..3573435	+	108	152971774	-	KPN_03255	-	hypothetical protein
3193	 53.87	0	3573888..3574778	+	296	152971775	-	KPN_03256	-	putative inner membrane permease of oligogalacturonide ABC transporter
3194	 57.25	0	3574771..3575673	+	300	152971776	-	KPN_03257	-	putative binding-protein-dependent transport systems inner membrane component
3195	 55.67	0	3575686..3576813	+	375	152971777	-	KPN_03258	-	putative ATP-binding component of a transport system
3196	 56.80	0	3576830..3578116	+	428	152971778	-	KPN_03259	-	putative ABC transporter periplasmic binding protein
3197	 56.59	0	3578176..3579465	-	429	152971779	-	KPN_03260	-	putative outer membrane protein
3198	 62.56	0	3579641..3581077	-	478	152971780	-	KPN_03261	-	glycoside hydrolase family protein 32
3199	 57.73	0	3581094..3582335	-	413	152971781	-	KPN_03262	-	galactoside permease
3200	 61.72	0	3582562..3583572	+	336	152971782	-	KPN_03263	-	LacI transcriptional regulator
3201	 58.81	0	3583569..3584930	-	453	152971783	araE	KPN_03264	-	low-affinity L-arabinose transport system proton symport protein
3202	 60.89	0	3585286..3586047	-	253	152971784	kduD	KPN_03265	-	2-deoxy-D-gluconate 3-dehydrogenase
3203	 57.23	0	3586533..3587708	+	391	152971785	tolB	KPN_03266	-	translocation protein TolB precursor
3204	 55.17	0	3587844..3588539	-	231	152971786	yjhA	KPN_03267	-	hypothetical protein
3205	 64.60	+1	3588787..3589950	-	387	152971787	yqeF	KPN_03268	-	acetyl-CoA acetyltransferase
3206	 64.48	+1	3590069..3590938	-	289	152971788	ybbS	KPN_03269	-	LysR family transcriptional regulator
3207	 61.04	0	3591041..3591502	+	153	152971789	rnfA	KPN_03270	-	Na(+)-translocating NADH-quinone reductase subunit E
3208	 56.26	0	3591626..3592855	+	409	152971790	yqeG	KPN_03271	-	HAAAP family transporter
3209	 62.46	0	3592974..3593852	+	292	152971791	-	KPN_03272	-	putative aldo/keto reductase
3210	 46.95	-1	3594957..3595529	+	190	152971792	-	KPN_03273	-	LuxR transcriptional regulator
3211	 46.86	-1	3595673..3596389	+	238	152971793	-	KPN_03274	-	hypothetical protein
3212	 57.39	0	3596424..3597059	-	211	152971794	-	KPN_03275	-	putative fimbrial-like protein
3213	 58.13	0	3597073..3598068	-	331	152971795	-	KPN_03276	-	putative fimbrial-like protein
3214	 58.62	0	3598059..3600545	-	828	152971796	-	KPN_03277	-	putative fimbrial usher protein
3215	 54.84	0	3600557..3601258	-	233	152971797	-	KPN_03278	-	putative pili assembly chaperone
3216	 54.64	0	3601354..3601935	-	193	152971798	-	KPN_03279	-	putative fimbrial-like protein
3217	 52.38	0	3602668..3602877	+	69	152971799	-	KPN_03280	-	hypothetical protein
3218	 64.66	+1	3602973..3603869	-	298	152971800	-	KPN_03281	-	hypothetical protein
3219	 34.52	-2	3603868..3603951	+	27	152971801	-	KPN_03282	-	hypothetical protein
3220	 63.12	0	3603951..3604457	+	168	152971802	-	KPN_03283	-	putative regulatory protein  MarR
3221	 61.23	0	3604454..3605410	-	318	152971803	-	KPN_03284	-	hypothetical protein
3222	 52.97	0	3606628..3607233	+	201	152971804	fimB	KPN_03285	-	tyrosine recombinase
3223	 53.79	0	3607740..3608306	+	188	152971805	fimE	KPN_03286	-	tyrosine recombinase
3224	 59.38	0	3608786..3609334	+	182	152971806	fimA	KPN_03287	-	major type 1 subunit fimbrin (pilin)
3225	 58.90	0	3609414..3609941	+	175	152971807	fimI	KPN_03288	-	fimbrial protein
3226	 57.21	0	3610009..3610695	+	228	152971808	fimC	KPN_03289	-	periplasmic chaperone
3227	 61.88	0	3610777..3613389	+	870	152971809	fimD	KPN_03290	-	outer membrane protein; export and assembly of type 1 fimbriae
3228	 61.58	0	3613397..3613927	+	176	152971810	fimF	KPN_03291	-	fimbrial morphology
3229	 62.48	0	3613940..3614440	+	166	152971811	fimG	KPN_03292	-	fimbrial morphology
3230	 61.48	0	3614455..3615360	+	301	152971812	fimH	KPN_03293	-	minor fimbrial subunit
3231	 60.93	0	3615357..3616769	+	470	152971813	-	KPN_03294	-	putative fimbrial protein
3232	 50.55	-1	3616812..3617084	-	90	152971814	-	KPN_03295	-	acyltransferase domain-containing protein
3233	 52.22	0	3617096..3617365	-	89	152971815	-	KPN_03296	-	hypothetical protein
3234	 63.84	+1	3617811..3618836	+	341	152971816	-	KPN_03297	-	multidrug resistance protein MdtN
3235	 65.63	+1	3618849..3620786	+	645	152971817	-	KPN_03298	-	multidrug efflux system protein MdtO
3236	 64.46	+1	3620783..3622231	+	482	152971818	-	KPN_03299	-	putative outer membrane efflux protein MdtP
3237	 55.67	0	3622497..3622796	-	99	152971819	-	KPN_03300	-	hypothetical protein
3238	 66.18	+1	3622981..3623394	-	137	152971820	-	KPN_03301	-	hypothetical protein
3239	 57.13	0	3623370..3624533	-	387	152971821	-	KPN_03302	-	hypothetical protein
3240	 60.76	0	3625006..3625428	-	140	152971822	arsC	KPN_03303	-	arsenate reductase
3241	 60.79	0	3625438..3626730	-	430	152971823	arsB	KPN_03304	-	Ars family arsenical pump
3242	 60.91	0	3626782..3627111	-	109	152971824	arsR	KPN_03305	-	arsenical resistance transcriptional repressor
3243	 56.46	0	3627330..3627623	+	97	152971825	-	KPN_03306	-	hypothetical protein
3244	 61.26	0	3627654..3628226	+	190	152971826	-	KPN_03307	-	hypothetical protein
3245	 54.48	0	3628230..3629156	-	308	152971827	-	KPN_03308	-	LysR family transcriptional regulator
3246	 51.78	-1	3629295..3629603	+	102	152971828	-	KPN_03309	-	putative superoxide dismutase, iron
3247	 56.45	0	3629612..3630169	+	185	152971829	-	KPN_03310	-	putative NAD(P)H oxidoreductase
3248	 59.48	0	3630250..3631209	+	319	152971830	-	KPN_03311	-	putative NAD(P)H-dependent xylose reductase
3249	 59.58	0	3631242..3632045	+	267	152971831	-	KPN_03312	-	putative carboxymuconolactone decarboxylase
3250	 56.45	0	3632409..3633338	-	309	152971832	-	KPN_03313	-	transcriptional regulator LysR
3251	 58.69	0	3633465..3634856	+	463	152971833	-	KPN_03314	-	putative transport protein
3252	 59.80	0	3635178..3635891	-	237	152971834	ygeR	KPN_03316	-	putative lipoprotein
3253	 61.08	0	3636208..3636762	+	184	152971835	idi	KPN_03317	-	isopentenyl-diphosphate delta-isomerase
3254	 56.32	0	3636997..3638514	-	505	152971836	lysS	KPN_03318	-	lysyl-tRNA synthetase
3255	 57.42	0	3638524..3639486	-	320	152971837	prfB	KPN_03319	-	peptide chain release factor 2
3256	 63.49	0	3639708..3641441	-	577	152971838	recJ	KPN_03320	-	ssDNA exonuclease RecJ
3257	 58.12	0	3641447..3642160	-	237	152971839	dsbC	KPN_03321	-	thiol:disulfide interchange protein DsbC
3258	 61.87	0	3642183..3643079	-	298	152971840	xerD	KPN_03322	-	site-specific tyrosine recombinase XerD
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.