IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3136	 65.00	+1	3510675..3511634	-	319	152971718	cibB	KPN_03199	-	cobalamin biosynthesis protein
3137	 62.96	0	3511631..3513085	-	484	152971719	cbiA	KPN_03200	-	cobyrinic acid a,c-diamide synthase
3138	 53.62	0	3513560..3514471	-	303	152971720	pocR	KPN_03201	-	hypothetical protein
3139	 58.27	0	3514675..3515484	-	269	152971721	pduF	KPN_03202	-	propanediol utilization: propanediol diffusion facilitator
3140	 55.44	0	3516010..3516294	+	94	152971722	pduA	KPN_03203	-	propanediol utilization: polyhedral bodies
3141	 61.99	0	3516291..3517103	+	270	152971723	pudB	KPN_03204	-	propanediol utilization: polyhedral bodies
3142	 58.56	0	3517122..3518786	+	554	152971724	pduC	KPN_03205	-	propanediol utilization: dehydratase, large subunit
3143	 58.84	0	3518797..3519486	+	229	152971725	pduD	KPN_03206	-	propanediol utilization: dehydratase, medium subunit
3144	 60.19	0	3519501..3520025	+	174	152971726	pduE	KPN_03207	-	propanediol utilization: dehydratase, small subunit
3145	 60.83	0	3520038..3521870	+	610	152971727	pduG	KPN_03208	-	propanediol utilization: diol dehydratase reactivation
3146	 58.40	0	3521860..3522210	+	116	152971728	pduH	KPN_03209	-	propanediol utilization: diol dehydratase reactivation
3147	 59.06	0	3522229..3522504	+	91	152971729	pduJ	KPN_03210	-	propanediol utilization: polyhedral bodies
3148	 66.22	+1	3522526..3522972	+	148	152971730	pduK	KPN_03211	-	propanediol utilization: polyhedral bodies
3149	 60.35	0	3522972..3523604	+	210	152971731	pduL	KPN_03212	-	propanediol utilization
3150	 66.67	+1	3523601..3524092	+	163	152971732	pduM	KPN_03213	-	propanediol utilization
3151	 62.32	0	3524096..3524371	+	91	152971733	pduN	KPN_03214	-	propanediol utilization: polyhedral bodies
3152	 63.82	+1	3524382..3525398	+	338	152971734	pduO	KPN_03215	-	propanediol utilization: B12 related
3153	 60.98	0	3525395..3526783	+	462	152971735	pduP	KPN_03216	-	propanediol utilization: CoA-dependent propionaldehyde dehydrogenase
3154	 65.23	+1	3526795..3527907	+	370	152971736	pduQ	KPN_03217	-	propanediol utilization: propanol dehydrogenase
3155	 64.45	+1	3527904..3529256	+	450	152971737	pduS	KPN_03218	-	propanediol utilization: polyhedral bodies
3156	 64.32	+1	3529259..3529813	+	184	152971738	pduT	KPN_03219	-	propanediol utilization: polyhedral bodies
3157	 58.69	0	3529813..3530163	+	116	152971739	pduU	KPN_03220	-	propanediol utilization: polyhedral bodies
3158	 60.09	0	3530168..3530608	+	146	152971740	pduV	KPN_03221	-	propanediol utilization
3159	 61.98	0	3530605..3531819	+	404	152971741	pduW	KPN_03222	-	propionate kinase
3160	 66.11	+1	3531875..3532777	+	300	152971742	pduX	KPN_03223	-	propanediol utilization
3161	 65.00	+1	3532781..3533857	-	358	152971743	cobD	KPN_03224	-	threonine-phosphate decarboxylase
3162	 60.45	0	3533875..3535128	-	417	152971744	amiC	KPN_03225	-	N-acetylmuramoyl-L-alanine amidase
3163	 58.26	0	3535356..3536687	+	443	152971745	argA	KPN_03226	-	N-acetylglutamate synthase
3164	 56.07	0	3536917..3537237	+	106	152971746	-	KPN_03227	-	hypothetical protein
3165	 68.13	+1	3537295..3539139	-	614	152971747	recD	KPN_03228	-	exonuclease V subunit alpha
3166	 64.12	+1	3539136..3542672	-	1178	152971748	recB	KPN_03229	-	exonuclease V subunit beta
3167	 59.60	0	3542669..3545554	-	961	152971749	ptr	KPN_03230	-	protease III
3168	 62.46	0	3545675..3549004	-	1109	152971750	recC	KPN_03231	-	exonuclease V subunit gamma
3169	 62.96	0	3549065..3549388	-	107	152971751	ppdC	KPN_03232	-	hypothetical protein
3170	 66.92	+1	3549373..3549762	-	129	152971752	ygdB	KPN_03233	-	hypothetical protein
3171	 69.18	+1	3549777..3550334	-	185	152971753	ppdB	KPN_03234	-	hypothetical protein
3172	 63.59	0	3550331..3550882	-	183	152971754	ppdA	KPN_03235	-	hypothetical protein
3173	 57.74	0	3551066..3551860	-	264	152971755	thyA	KPN_03236	-	thymidylate synthase
3174	 59.13	0	3551867..3552742	-	291	152971756	lgt	KPN_03237	-	prolipoprotein diacylglyceryl transferase
3175	 62.75	0	3552988..3555234	-	748	152971757	ptsP	KPN_03238	-	fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain
3176	 53.48	0	3555247..3555777	-	176	152971758	ygdP	KPN_03239	-	dinucleoside polyphosphate hydrolase
3177	 64.94	+1	3556460..3557155	+	231	152971759	mutH	KPN_03240	-	DNA mismatch repair protein
3178	 54.90	0	3557219..3557932	+	237	152971760	ygdQ	KPN_03241	-	putative transmembrane protein, transport
3179	 47.49	-1	3558056..3558274	+	72	152971761	ygdR	KPN_03242	-	hypothetical protein
3180	 60.33	0	3558495..3559535	+	346	152971762	tas	KPN_03243	-	putative aldo-keto reductase
3181	 62.90	0	3559638..3560831	-	397	152971763	ygeD	KPN_03244	-	hypothetical protein
3182	 60.79	0	3560824..3562983	-	719	152971764	aas	KPN_03245	-	bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase
3183	 63.23	0	3563605..3564621	+	338	152971765	galR	KPN_03246	-	DNA-binding transcriptional regulator GalR
3184	 65.42	+1	3564582..3565061	-	159	152971766	-	KPN_03247	-	putative acyltransferase
3185	 61.37	0	3565058..3565831	-	257	152971767	-	KPN_03248	-	putative regulatory protein, GntR
3186	 58.75	0	3565899..3567326	-	475	152971768	-	KPN_03249	-	glycoside hydrolase family protein 1
3187	 57.92	0	3567334..3568671	-	445	152971769	-	KPN_03250	-	putative phosphotransferase system, EIIC
3188	 59.15	0	3568962..3569972	+	336	152971770	-	KPN_03251	-	putative transcriptional regulator
3189	 63.18	0	3569965..3571227	-	420	152971771	lysA	KPN_03252	-	diaminopimelate decarboxylase
3190	 65.70	+1	3571364..3572290	+	308	152971772	lysR	KPN_03253	-	DNA-binding transcriptional regulator LysR
3191	 62.46	0	3572256..3572969	-	237	152971773	ygeA	KPN_03254	-	putative racemase
3192	 56.88	0	3573109..3573435	+	108	152971774	-	KPN_03255	-	hypothetical protein
3193	 53.87	0	3573888..3574778	+	296	152971775	-	KPN_03256	-	putative inner membrane permease of oligogalacturonide ABC transporter
3194	 57.25	0	3574771..3575673	+	300	152971776	-	KPN_03257	-	putative binding-protein-dependent transport systems inner membrane component
3195	 55.67	0	3575686..3576813	+	375	152971777	-	KPN_03258	-	putative ATP-binding component of a transport system
3196	 56.80	0	3576830..3578116	+	428	152971778	-	KPN_03259	-	putative ABC transporter periplasmic binding protein
3197	 56.59	0	3578176..3579465	-	429	152971779	-	KPN_03260	-	putative outer membrane protein
3198	 62.56	0	3579641..3581077	-	478	152971780	-	KPN_03261	-	glycoside hydrolase family protein 32
3199	 57.73	0	3581094..3582335	-	413	152971781	-	KPN_03262	-	galactoside permease
3200	 61.72	0	3582562..3583572	+	336	152971782	-	KPN_03263	-	LacI transcriptional regulator
3201	 58.81	0	3583569..3584930	-	453	152971783	araE	KPN_03264	-	low-affinity L-arabinose transport system proton symport protein
3202	 60.89	0	3585286..3586047	-	253	152971784	kduD	KPN_03265	-	2-deoxy-D-gluconate 3-dehydrogenase
3203	 57.23	0	3586533..3587708	+	391	152971785	tolB	KPN_03266	-	translocation protein TolB precursor
3204	 55.17	0	3587844..3588539	-	231	152971786	yjhA	KPN_03267	-	hypothetical protein
3205	 64.60	+1	3588787..3589950	-	387	152971787	yqeF	KPN_03268	-	acetyl-CoA acetyltransferase
3206	 64.48	+1	3590069..3590938	-	289	152971788	ybbS	KPN_03269	-	LysR family transcriptional regulator
3207	 61.04	0	3591041..3591502	+	153	152971789	rnfA	KPN_03270	-	Na(+)-translocating NADH-quinone reductase subunit E
3208	 56.26	0	3591626..3592855	+	409	152971790	yqeG	KPN_03271	-	HAAAP family transporter
3209	 62.46	0	3592974..3593852	+	292	152971791	-	KPN_03272	-	putative aldo/keto reductase
3210	 46.95	-1	3594957..3595529	+	190	152971792	-	KPN_03273	-	LuxR transcriptional regulator
3211	 46.86	-1	3595673..3596389	+	238	152971793	-	KPN_03274	-	hypothetical protein
3212	 57.39	0	3596424..3597059	-	211	152971794	-	KPN_03275	-	putative fimbrial-like protein
3213	 58.13	0	3597073..3598068	-	331	152971795	-	KPN_03276	-	putative fimbrial-like protein
3214	 58.62	0	3598059..3600545	-	828	152971796	-	KPN_03277	-	putative fimbrial usher protein
3215	 54.84	0	3600557..3601258	-	233	152971797	-	KPN_03278	-	putative pili assembly chaperone
3216	 54.64	0	3601354..3601935	-	193	152971798	-	KPN_03279	-	putative fimbrial-like protein
3217	 52.38	0	3602668..3602877	+	69	152971799	-	KPN_03280	-	hypothetical protein
3218	 64.66	+1	3602973..3603869	-	298	152971800	-	KPN_03281	-	hypothetical protein
3219	 34.52	-2	3603868..3603951	+	27	152971801	-	KPN_03282	-	hypothetical protein
3220	 63.12	0	3603951..3604457	+	168	152971802	-	KPN_03283	-	putative regulatory protein  MarR
3221	 61.23	0	3604454..3605410	-	318	152971803	-	KPN_03284	-	hypothetical protein
3222	 52.97	0	3606628..3607233	+	201	152971804	fimB	KPN_03285	-	tyrosine recombinase
3223	 53.79	0	3607740..3608306	+	188	152971805	fimE	KPN_03286	-	tyrosine recombinase
3224	 59.38	0	3608786..3609334	+	182	152971806	fimA	KPN_03287	-	major type 1 subunit fimbrin (pilin)
3225	 58.90	0	3609414..3609941	+	175	152971807	fimI	KPN_03288	-	fimbrial protein
3226	 57.21	0	3610009..3610695	+	228	152971808	fimC	KPN_03289	-	periplasmic chaperone
3227	 61.88	0	3610777..3613389	+	870	152971809	fimD	KPN_03290	-	outer membrane protein; export and assembly of type 1 fimbriae
3228	 61.58	0	3613397..3613927	+	176	152971810	fimF	KPN_03291	-	fimbrial morphology
3229	 62.48	0	3613940..3614440	+	166	152971811	fimG	KPN_03292	-	fimbrial morphology
3230	 61.48	0	3614455..3615360	+	301	152971812	fimH	KPN_03293	-	minor fimbrial subunit
3231	 60.93	0	3615357..3616769	+	470	152971813	-	KPN_03294	-	putative fimbrial protein
3232	 50.55	-1	3616812..3617084	-	90	152971814	-	KPN_03295	-	acyltransferase domain-containing protein
3233	 52.22	0	3617096..3617365	-	89	152971815	-	KPN_03296	-	hypothetical protein
3234	 63.84	+1	3617811..3618836	+	341	152971816	-	KPN_03297	-	multidrug resistance protein MdtN
3235	 65.63	+1	3618849..3620786	+	645	152971817	-	KPN_03298	-	multidrug efflux system protein MdtO
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.