IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3080	 61.92	0	3443851..3445218	+	455	152971662	sdaB	KPN_03140	-	L-serine deaminase 2
3081	 62.53	0	3445357..3446298	+	313	152971663	-	KPN_03141	-	putative ABC-type transport protein
3082	 58.65	0	3447578..3448999	-	473	152971664	-	KPN_03142	-	putative general substrate transporter
3083	 56.66	0	3449193..3450071	-	292	152971665	-	KPN_03143	-	putative ABC-type metal ion transport system, periplasmic component/surface antigen
3084	 62.23	0	3450068..3450766	-	232	152971666	-	KPN_03144	-	putative ABC-type metal ion transport system, permease component
3085	 67.17	+1	3451194..3451784	-	196	152971667	-	KPN_03145	-	D- and L-methionine ABC transporter ATP-binding protein
3086	 69.38	+1	3453261..3454658	-	465	152971668	-	KPN_03146	-	putative oxidoreductase
3087	 63.34	0	3454705..3455877	-	390	152971669	-	KPN_03147	-	alkanesulfonate monooxygenase
3088	 65.64	+1	3456149..3458092	+	647	152971670	-	KPN_03148	-	putative transcriptional regulator
3089	 67.72	+1	3458189..3458944	+	251	152971671	xni	KPN_03149	-	exonuclease IX
3090	 63.85	+1	3459003..3460139	-	378	152971672	fucO	KPN_03150	-	L-1,2-propanediol oxidoreductase
3091	 60.03	0	3460179..3460826	-	215	152971673	fucA	KPN_03151	-	L-fuculose phosphate aldolase
3092	 55.66	0	3461432..3462703	+	423	152971674	fucP	KPN_03152	-	L-fucose transporter
3093	 62.27	0	3462736..3464511	+	591	152971675	fucI	KPN_03153	-	L-fucose isomerase
3094	 64.98	+1	3464619..3466037	+	472	152971676	fucK	KPN_03154	-	L-fuculokinase
3095	 57.68	0	3466039..3466461	+	140	152971677	fucU	KPN_03155	-	fucose operon protein
3096	 59.92	0	3466520..3467230	+	236	152971678	fucR	KPN_03156	-	DNA-binding transcriptional activator FucR
3097	 59.13	0	3467279..3468379	-	366	152971679	ygdE	KPN_03157	-	putative RNA 2'-O-ribose methyltransferase
3098	 54.55	0	3468372..3468767	-	131	152971680	ygdD	KPN_03158	-	hypothetical protein
3099	 53.05	0	3468787..3469704	-	305	152971681	gcvA	KPN_03159	-	DNA-binding transcriptional activator GcvA
3100	 49.78	-1	3470056..3470286	-	76	152971682	ygdI	KPN_03160	-	hypothetical protein
3101	 65.92	+1	3470478..3471683	+	401	152971683	csdA	KPN_03161	-	cysteine sulfinate desulfinase
3102	 63.66	0	3471683..3472114	+	143	152971684	ygdK	KPN_03162	-	hypothetical protein
3103	 61.92	0	3472157..3472978	-	273	152971685	ygdL	KPN_03163	-	putative enzyme
3104	 59.93	0	3473066..3474163	-	365	152971686	mltA	KPN_03164	-	murein transglycosylase A
3105	 55.03	0	3476167..3477507	+	446	152971687	-	KPN_03168	-	hypothetical protein
3106	 59.27	0	3478172..3479875	+	567	152971688	-	KPN_03169	-	hypothetical protein
3107	 56.81	0	3480091..3482646	+	851	152971689	-	KPN_03170	-	hypothetical protein
3108	 45.94	-2	3482649..3484100	+	483	152971690	-	KPN_03171	-	hypothetical protein
3109	 52.28	0	3484185..3485213	+	342	152971691	-	KPN_03172	-	hypothetical protein
3110	 37.90	-2	3485322..3485693	+	123	152971692	-	KPN_03173	-	hypothetical protein
3111	 38.95	-2	3485999..3487138	+	379	152971693	-	KPN_03174	-	hypothetical protein
3112	 59.91	0	3487423..3490500	+	1025	152971694	-	KPN_03175	-	hypothetical protein
3113	 59.54	0	3490493..3490885	+	130	152971695	-	KPN_03176	-	hypothetical protein
3114	 41.54	-2	3491456..3492418	+	320	152971696	-	KPN_03177	-	hypothetical protein
3115	 36.52	-2	3492511..3493107	+	198	152971697	-	KPN_03178	-	hypothetical protein
3116	 56.79	0	3493264..3495024	+	586	152971698	-	KPN_03179	-	hypothetical protein
3117	 56.42	0	3494988..3496070	+	360	152971699	-	KPN_03180	-	hypothetical protein
3118	 53.29	0	3496588..3497013	+	141	152971700	-	KPN_03181	-	hypothetical protein
3119	 66.00	+1	3497239..3498294	-	351	152971701	cobT	KPN_03182	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
3120	 63.55	0	3498338..3498883	-	181	152971702	cobU	KPN_03183	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
3121	 64.04	+1	3498877..3500400	-	507	152971703	cbiP	KPN_03184	-	cobyric acid synthase
3122	 62.30	0	3500397..3501221	-	274	152971704	cbiO	KPN_03185	-	cobalt transporter ATP-binding subunit
3123	 62.09	0	3501230..3501907	-	225	152971705	cboQ	KPN_03186	-	hypothetical protein
3124	 58.16	0	3501894..3502175	-	93	152971706	cbiN	KPN_03187	-	cobalt transport protein CbiN
3125	 62.47	0	3502177..3502914	-	245	152971707	cbiM	KPN_03188	-	cobalt transport protein CbiM
3126	 66.39	+1	3502914..3503624	-	236	152971708	cbiL	KPN_03189	-	cobalt-precorrin-2 C(20)-methyltransferase
3127	 61.26	0	3503621..3504415	-	264	152971709	cbiK	KPN_03190	-	hypothetical protein
3128	 65.78	+1	3504426..3505211	-	261	152971710	cbiJ	KPN_03191	-	cobalt-precorrin-6x reductase
3129	 60.61	0	3505208..3505933	-	241	152971711	cbiH	KPN_03192	-	hypothetical protein
3130	 66.57	+1	3505933..3506988	-	351	152971712	cbiG	KPN_03193	-	cobalamin biosynthesis protein CbiG
3131	 63.82	+1	3506969..3507742	-	257	152971713	cbiF	KPN_03194	-	hypothetical protein
3132	 64.56	+1	3507735..3508304	-	189	152971714	cbiT	KPN_03195	-	cobalt-precorrin-6Y C(15)-methyltransferase
3133	 67.33	+1	3508294..3508899	-	201	152971715	cbiE	KPN_03196	-	cobalt-precorrin-6Y C(5)-methyltransferase
3134	 62.46	0	3508893..3510032	-	379	152971716	cbiD	KPN_03197	-	cobalt-precorrin-6A synthase
3135	 64.31	+1	3510029..3510664	-	211	152971717	cbiC	KPN_03198	-	precorrin-8X methylmutase
3136	 65.00	+1	3510675..3511634	-	319	152971718	cibB	KPN_03199	-	cobalamin biosynthesis protein
3137	 62.96	0	3511631..3513085	-	484	152971719	cbiA	KPN_03200	-	cobyrinic acid a,c-diamide synthase
3138	 53.62	0	3513560..3514471	-	303	152971720	pocR	KPN_03201	-	hypothetical protein
3139	 58.27	0	3514675..3515484	-	269	152971721	pduF	KPN_03202	-	propanediol utilization: propanediol diffusion facilitator
3140	 55.44	0	3516010..3516294	+	94	152971722	pduA	KPN_03203	-	propanediol utilization: polyhedral bodies
3141	 61.99	0	3516291..3517103	+	270	152971723	pudB	KPN_03204	-	propanediol utilization: polyhedral bodies
3142	 58.56	0	3517122..3518786	+	554	152971724	pduC	KPN_03205	-	propanediol utilization: dehydratase, large subunit
3143	 58.84	0	3518797..3519486	+	229	152971725	pduD	KPN_03206	-	propanediol utilization: dehydratase, medium subunit
3144	 60.19	0	3519501..3520025	+	174	152971726	pduE	KPN_03207	-	propanediol utilization: dehydratase, small subunit
3145	 60.83	0	3520038..3521870	+	610	152971727	pduG	KPN_03208	-	propanediol utilization: diol dehydratase reactivation
3146	 58.40	0	3521860..3522210	+	116	152971728	pduH	KPN_03209	-	propanediol utilization: diol dehydratase reactivation
3147	 59.06	0	3522229..3522504	+	91	152971729	pduJ	KPN_03210	-	propanediol utilization: polyhedral bodies
3148	 66.22	+1	3522526..3522972	+	148	152971730	pduK	KPN_03211	-	propanediol utilization: polyhedral bodies
3149	 60.35	0	3522972..3523604	+	210	152971731	pduL	KPN_03212	-	propanediol utilization
3150	 66.67	+1	3523601..3524092	+	163	152971732	pduM	KPN_03213	-	propanediol utilization
3151	 62.32	0	3524096..3524371	+	91	152971733	pduN	KPN_03214	-	propanediol utilization: polyhedral bodies
3152	 63.82	+1	3524382..3525398	+	338	152971734	pduO	KPN_03215	-	propanediol utilization: B12 related
3153	 60.98	0	3525395..3526783	+	462	152971735	pduP	KPN_03216	-	propanediol utilization: CoA-dependent propionaldehyde dehydrogenase
3154	 65.23	+1	3526795..3527907	+	370	152971736	pduQ	KPN_03217	-	propanediol utilization: propanol dehydrogenase
3155	 64.45	+1	3527904..3529256	+	450	152971737	pduS	KPN_03218	-	propanediol utilization: polyhedral bodies
3156	 64.32	+1	3529259..3529813	+	184	152971738	pduT	KPN_03219	-	propanediol utilization: polyhedral bodies
3157	 58.69	0	3529813..3530163	+	116	152971739	pduU	KPN_03220	-	propanediol utilization: polyhedral bodies
3158	 60.09	0	3530168..3530608	+	146	152971740	pduV	KPN_03221	-	propanediol utilization
3159	 61.98	0	3530605..3531819	+	404	152971741	pduW	KPN_03222	-	propionate kinase
3160	 66.11	+1	3531875..3532777	+	300	152971742	pduX	KPN_03223	-	propanediol utilization
3161	 65.00	+1	3532781..3533857	-	358	152971743	cobD	KPN_03224	-	threonine-phosphate decarboxylase
3162	 60.45	0	3533875..3535128	-	417	152971744	amiC	KPN_03225	-	N-acetylmuramoyl-L-alanine amidase
3163	 58.26	0	3535356..3536687	+	443	152971745	argA	KPN_03226	-	N-acetylglutamate synthase
3164	 56.07	0	3536917..3537237	+	106	152971746	-	KPN_03227	-	hypothetical protein
3165	 68.13	+1	3537295..3539139	-	614	152971747	recD	KPN_03228	-	exonuclease V subunit alpha
3166	 64.12	+1	3539136..3542672	-	1178	152971748	recB	KPN_03229	-	exonuclease V subunit beta
3167	 59.60	0	3542669..3545554	-	961	152971749	ptr	KPN_03230	-	protease III
3168	 62.46	0	3545675..3549004	-	1109	152971750	recC	KPN_03231	-	exonuclease V subunit gamma
3169	 62.96	0	3549065..3549388	-	107	152971751	ppdC	KPN_03232	-	hypothetical protein
3170	 66.92	+1	3549373..3549762	-	129	152971752	ygdB	KPN_03233	-	hypothetical protein
3171	 69.18	+1	3549777..3550334	-	185	152971753	ppdB	KPN_03234	-	hypothetical protein
3172	 63.59	0	3550331..3550882	-	183	152971754	ppdA	KPN_03235	-	hypothetical protein
3173	 57.74	0	3551066..3551860	-	264	152971755	thyA	KPN_03236	-	thymidylate synthase
3174	 59.13	0	3551867..3552742	-	291	152971756	lgt	KPN_03237	-	prolipoprotein diacylglyceryl transferase
3175	 62.75	0	3552988..3555234	-	748	152971757	ptsP	KPN_03238	-	fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain
3176	 53.48	0	3555247..3555777	-	176	152971758	ygdP	KPN_03239	-	dinucleoside polyphosphate hydrolase
3177	 64.94	+1	3556460..3557155	+	231	152971759	mutH	KPN_03240	-	DNA mismatch repair protein
3178	 54.90	0	3557219..3557932	+	237	152971760	ygdQ	KPN_03241	-	putative transmembrane protein, transport
3179	 47.49	-1	3558056..3558274	+	72	152971761	ygdR	KPN_03242	-	hypothetical protein
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.