IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
264	 40.12	-2	307297..308121	-	274	152968846	-	KPN_00272	-	putative sensory transducer
265	 55.25	0	308354..309334	-	326	152968847	-	KPN_00273	-	hypothetical protein
266	 45.71	-2	309928..310323	+	131	152968848	-	KPN_00274	-	hypothetical protein
267	 52.41	0	311624..312142	+	172	152968849	-	KPN_00275	-	fimbrial subunit
268	 43.92	-2	312191..312889	+	232	152968850	-	KPN_00276	-	putative fimbrial chaparone
269	 52.98	0	312969..315452	+	827	152968851	-	KPN_00277	-	putativie fimbrial usher
270	 49.87	-1	315503..316657	+	384	152968852	-	KPN_00278	-	hypothetical protein
271	 62.52	0	317320..318573	-	417	152968853	proA	KPN_00280	-	gamma-glutamyl phosphate reductase
272	 63.13	0	318584..319687	-	367	152968854	proB	KPN_00281	-	gamma-glutamyl kinase
273	 54.91	0	320001..321029	+	342	152968855	phoE	KPN_00282	-	outer membrane phosphoporin protein E
274	 59.52	0	321074..321535	-	153	152968856	nlpC	KPN_00283	-	lipoprotein
275	 66.67	+1	324274..324444	-	56	152968857	yeiE	KPN_00284	-	putative transcriptional regulator (LysR familiy)
276	 67.20	+1	324595..324780	-	61	152968858	yhhM	KPN_00285	-	putative receptor
277	 64.18	+1	324994..325878	-	294	152968859	phnE	KPN_00286	-	membrane channel protein component of Pn transporter
278	 61.63	0	325875..326747	-	290	152968860	-	KPN_00287	-	hypothetical protein
279	 60.53	0	327775..328638	-	287	152968861	phnC	KPN_00288	-	ATP-binding component of phosphonate transport
280	 55.30	0	328747..328878	+	43	152968862	yfeU	KPN_00289	-	hypothetical protein
281	 41.07	-2	329466..330008	+	180	152968863	ykgK	KPN_00290	-	putative regulator
282	 57.99	0	330083..330670	+	195	152968864	yagZ	KPN_00291	-	hypothetical protein
283	 59.79	0	330729..331397	+	222	152968865	yagY	KPN_00292	-	hypothetical protein
284	 62.22	0	331474..333948	+	824	152968866	yagX	KPN_00293	-	putative enzyme
285	 57.79	0	333938..335581	+	547	152968867	yagW	KPN_00294	-	putative receptor
286	 61.74	0	335550..336260	+	236	152968868	yagV	KPN_00295	-	hypothetical protein
287	 66.52	+1	336264..336953	-	229	152968869	yhdY	KPN_00296	-	amino acid ABC transporter membrane protein
288	 65.46	+1	336943..337686	-	247	152968870	gltJ	KPN_00297	-	glutamate/aspartate ABC transporter membrane protein
289	 63.98	+1	337692..338510	-	272	152968871	gltL	KPN_00298	-	ATP-binding protein of glutamate/aspartate transport system
290	 60.62	0	338512..339321	-	269	152968872	fliY	KPN_00299	-	cysteine ABC transporter periplasmic substrate binding protein
291	 57.89	0	339656..339826	+	56	152968873	umuC	KPN_00300	-	DNA polymerase IV
292	 61.64	0	339943..340638	-	231	152968874	livF	KPN_00301	-	ATP-binding component of leucine transport
293	 60.79	0	340631..341413	-	260	152968875	livG	KPN_00302	-	ATP-binding component of high-affinity branched-chain amino acid transport system
294	 61.05	0	341400..342449	-	349	152968876	livM	KPN_00303	-	high-affinity branched-chain amino acid transport
295	 59.44	0	342449..343348	-	299	152968877	livH	KPN_00304	-	high-affinity branched-chain amino acid ABC transporter membrane protein
296	 58.90	0	343368..344474	-	368	152968878	livJ	KPN_00305	-	high-affinity branched-chain amino acid ABC transporter periplasmic substrate-binding protein
297	 65.64	+1	345049..345825	-	258	152968879	eutC	KPN_00306	-	ethanolamine ammonia-lyase small subunit
298	 62.99	0	345822..347210	-	462	152968880	eutB	KPN_00307	-	ethanolamine ammonia-lyase, heavy chain
299	 64.42	+1	347220..348599	-	459	152968881	yhfM	KPN_00308	-	putative amino acid/amine transport protein
300	 61.13	0	348873..350282	+	469	152968882	mmuP	KPN_00309	-	S-methylmethionine transporter
301	 67.52	+1	350269..351201	+	310	152968883	mmuM	KPN_00310	-	homocysteine methyltransferase
302	 61.27	0	351442..352404	+	320	152968884	tauA	KPN_00311	-	taurine ABC transporter periplasmic substrate-binding protein
303	 61.98	0	352416..353183	+	255	152968885	tauB	KPN_00312	-	taurine transporter ATP-binding subunit
304	 64.98	+1	353180..354007	+	275	152968886	tauC	KPN_00313	-	taurine transporter subunit
305	 60.33	0	354004..354855	+	283	152968887	tauD	KPN_00314	-	taurine dioxygenase
306	 61.37	0	355011..356729	-	572	152968888	yhjT	KPN_00315	-	hypothetical protein
307	 59.08	0	356933..357907	-	324	152968889	hemB	KPN_00316	-	delta-aminolevulinic acid dehydratase
308	 61.76	0	358014..359174	-	386	152968890	ampH	KPN_00317	-	beta-lactamase/D-alanine carboxypeptidase
309	 59.55	0	359373..359906	+	177	152968891	-	KPN_00318	-	isochorismatase family protein
310	 56.94	0	360021..361244	+	407	152968892	sbmA	KPN_00319	-	transport protein
311	 59.89	0	361263..362369	+	368	152968893	yaiW	KPN_00320	-	hypothetical protein
312	 58.75	0	362366..362668	-	100	152968894	yaiY	KPN_00321	-	hypothetical protein
313	 56.37	0	362921..363124	+	67	152968895	yaiZ	KPN_00322	-	hypothetical protein
314	 58.97	0	363157..364287	-	376	152968896	ddl	KPN_00323	-	D-alanylalanine synthetase
315	 65.65	+1	364348..365037	+	229	152968897	-	KPN_00324	-	putative inner membrane protein
316	 58.83	0	365207..366406	+	399	152968898	-	KPN_00325	-	putative permease
317	 50.96	-1	366706..366966	+	86	152968899	yaiB	KPN_00326	-	hypothetical protein
318	 59.19	0	367056..368486	+	476	152968900	phoA	KPN_00327	-	bacterial alkaline phosphatase
319	 53.33	0	368596..368895	+	99	152968901	psiF	KPN_00328	-	hypothetical protein
320	 59.68	0	368962..369777	-	271	152968902	proC	KPN_00329	-	pyrroline-5-carboxylate reductase
321	 63.62	0	369888..370346	+	152	152968903	yaiI	KPN_00330	-	hypothetical protein
322	 62.45	0	370343..371053	-	236	152968904	-	KPN_00331	-	hypothetical protein
323	 61.80	0	371382..371915	+	177	152968905	aroL	KPN_00332	-	shikimate kinase II
324	 55.21	0	371987..372178	+	63	152968906	yaiA	KPN_00333	-	hypothetical protein
325	 56.83	0	372434..373114	+	226	152968907	aroM	KPN_00334	-	hypothetical protein
326	 54.04	0	373192..373476	+	94	152968908	yaiE	KPN_00335	-	hypothetical protein
327	 58.00	0	373548..374459	-	303	152968909	rdgC	KPN_00336	-	recombination associated protein
328	 61.92	0	374516..375463	+	315	152968910	yajF	KPN_00337	-	NAGC-like transcriptional regulator
329	 63.86	+1	375537..378674	-	1045	152968911	sbcC	KPN_00338	-	exonuclease subunit SbcC
330	 62.60	0	378671..379876	-	401	152968912	sbcD	KPN_00339	-	exonuclease subunit SbcD
331	 56.09	0	380059..380748	+	229	152968913	phoB	KPN_00340	-	transcriptional regulator PhoB
332	 58.80	0	380770..382065	+	431	152968914	phoR	KPN_00341	-	phosphate regulon sensor protein
333	 60.91	0	382480..383799	+	439	152968915	brnQ	KPN_00342	-	branched chain amino acid transport system II carrier protein
334	 59.02	0	383940..385259	+	439	152968916	proY	KPN_00343	-	putative proline-specific permease
335	 62.76	0	385411..387228	+	605	152968917	malZ	KPN_00344	-	maltodextrin glucosidase
336	 59.91	0	387225..388127	-	300	152968918	-	KPN_00345	-	LysR family transcriptional regulator
337	 57.01	0	388394..389035	+	213	152968919	-	KPN_00346	-	putative cysteine hydrolase
338	 59.71	0	389222..389767	+	181	152968920	-	KPN_00347	-	putative transport protein
339	 62.33	0	389792..391660	+	622	152968921	-	KPN_00348	-	hypothetical protein
340	 57.26	0	391719..392579	-	286	152968922	-	KPN_00349	-	putative fructose-1,6-bisphosphate aldolase type II
341	 50.67	-1	392609..393571	-	320	152968923	-	KPN_00350	-	putative kinase
342	 57.10	0	393637..394974	-	445	152968924	-	KPN_00351	-	putative sugar-specific permeas
343	 47.22	-1	395049..395336	-	95	152968925	-	KPN_00352	-	putative phosphotransferase system, lactose/cellobiose-specific IIB subunit
344	 50.00	-1	395342..395785	-	147	152968926	-	KPN_00353	-	putative phosphoenolpyruvate-dependent sugar phosphotransferase system
345	 55.06	0	396132..396734	-	200	152968927	-	KPN_00354	-	putative thiol - alkyl hydroperoxide reductase
346	 61.00	0	396862..397443	-	193	152968928	yajB	KPN_00355	-	acyl carrier protein phosphodiesterase
347	 59.81	0	397699..398763	+	354	152968929	queA	KPN_00356	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
348	 55.85	0	398872..399999	+	375	152968930	tgt	KPN_00357	-	queuine tRNA-ribosyltransferase
349	 52.55	0	400022..400354	+	110	152968931	yajC	KPN_00358	-	preprotein translocase subunit YajC
350	 58.02	0	400414..402228	+	604	152968932	secD	KPN_00359	-	preprotein translocase subunit SecD
351	 57.61	0	402239..403210	+	323	152968933	secF	KPN_00360	-	preprotein translocase subunit SecF
352	 61.20	0	403347..403712	+	121	152968934	-	KPN_00361	-	hypothetical protein
353	 61.78	0	403736..404431	+	231	152968935	-	KPN_00362	-	DeoR family transcriptional regulator
354	 54.80	0	404486..405370	-	294	152968936	tsx	KPN_00363	-	nucleoside channel; receptor of phage T6 and colicin K
355	 60.56	0	405669..406208	-	179	152968937	yajI	KPN_00364	-	hypothetical protein
356	 55.56	0	406356..406805	+	149	152968938	ybaD	KPN_00365	-	transcriptional regulator NrdR
357	 64.22	+1	406809..407912	+	367	152968939	ribD	KPN_00366	-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase
358	 55.20	0	408000..408470	+	156	152968940	ribH	KPN_00367	-	riboflavin synthase subunit beta
359	 55.48	0	408490..408909	+	139	152968941	nusB	KPN_00368	-	transcription antitermination protein NusB
360	 61.21	0	408981..409952	+	323	152968942	thiL	KPN_00369	-	thiamine monophosphate kinase
361	 59.19	0	409981..410448	+	155	152968943	pgpA	KPN_00370	-	phosphatidylglycerophosphatase A
362	 63.28	0	410494..411408	-	304	152968944	yajO	KPN_00371	-	putative NAD(P)H-dependent xylose reductase
363	 60.06	0	411529..413391	-	620	152968945	dxs	KPN_00372	-	1-deoxy-D-xylulose-5-phosphate synthase
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.