IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3025	 64.27	+1	3381456..3383165	+	569	152971607	-	KPN_03085	-	acetolactate synthase catalytic subunit
3026	 61.22	0	3383205..3383498	-	97	152971608	-	KPN_03086	-	hypothetical protein
3027	 59.60	0	3383714..3386077	+	787	152971609	-	KPN_03087	-	outer membrane porin, receptor for ferric enterobactin and colicins B and D
3028	 63.68	0	3386143..3387180	+	345	152971610	-	KPN_03088	-	S-adenosylmethionine-dependent methyltransferase
3029	 64.84	+1	3387177..3387995	+	272	152971611	-	KPN_03089	-	vitamin B12-transporter protein BtuF
3030	 67.97	+1	3387995..3388990	+	331	152971612	-	KPN_03090	-	vtamin B12-transporter permease
3031	 67.44	+1	3388983..3389762	+	259	152971613	-	KPN_03091	-	hemin importer ATP-binding subunit
3032	 42.86	-2	3390041..3390523	+	160	152971614	-	KPN_03092	-	aminoacyl-histidine dipeptidase (peptidase D)
3033	 35.44	-2	3390984..3391316	+	110	152971615	-	KPN_03093	-	tagaturonate reductase
3034	 63.11	0	3391585..3394146	+	853	152971616	mutS	KPN_03094	-	DNA mismatch repair protein
3035	 41.67	-2	3394266..3394469	-	67	152971617	-	KPN_03095	-	small toxic membrane polypeptide
3036	 57.81	0	3394757..3394993	-	78	152971618	-	KPN_03096	-	putative cytoplasmic protein
3037	 58.12	0	3395004..3396431	-	475	152971619	-	KPN_03097	-	putative 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylase
3038	 60.77	0	3396431..3397024	-	197	152971620	-	KPN_03098	-	putative flavoprotein
3039	 61.27	0	3397198..3397605	+	135	152971621	-	KPN_03099	-	putative transcriptional regulator
3040	 63.51	0	3397614..3398501	-	295	152971622	-	KPN_03100	-	LysR family transcriptional regulator
3041	 62.43	0	3398610..3399812	+	400	152971623	-	KPN_03101	-	putative permease
3042	 55.56	0	3399809..3400186	+	125	152971624	-	KPN_03102	-	putative cytoplasmic protein
3043	 54.48	0	3400239..3401231	-	330	152971625	rpoS	KPN_03103	-	RNA polymerase sigma factor RpoS
3044	 56.73	0	3401389..3402525	-	378	152971626	nlpD	KPN_03104	-	lipoprotein NlpD
3045	 58.37	0	3402651..3403277	-	208	152971627	pcm	KPN_03105	-	protein-L-isoaspartate O-methyltransferase
3046	 61.62	0	3403271..3404023	-	250	152971628	surE	KPN_03106	-	stationary phase survival protein SurE
3047	 60.00	0	3404013..3405062	-	349	152971629	ygbO	KPN_03107	-	tRNA pseudouridine synthase D
3048	 60.83	0	3405059..3405538	-	159	152971630	ispF	KPN_03108	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
3049	 64.84	+1	3405538..3406248	-	236	152971631	ispD	KPN_03109	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
3050	 53.77	0	3406268..3406585	-	105	152971632	ftsB	KPN_03110	-	cell division protein FtsB
3051	 55.35	0	3406726..3407052	-	108	152971633	ygbE	KPN_03111	-	hypothetical protein
3052	 58.42	0	3407103..3407708	-	201	152971634	cysC	KPN_03112	-	adenylylsulfate kinase
3053	 60.36	0	3407708..3409135	-	475	152971635	cysN	KPN_03113	-	sulfate adenylyltransferase subunit 1
3054	 56.99	0	3409145..3410053	-	302	152971636	cysD	KPN_03114	-	sulfate adenylyltransferase subunit 2
3055	 63.10	0	3410063..3411436	-	457	152971637	cysG	KPN_03115	-	siroheme synthetase
3056	 59.69	0	3411716..3412762	+	348	152971638	iap	KPN_03116	-	alkaline phosphatase isozyme conversion aminopeptidase
3057	 58.64	0	3412835..3413569	-	244	152971639	cysH	KPN_03117	-	phosphoadenosine phosphosulfate reductase
3058	 59.25	0	3413668..3415380	-	570	152971640	cysI	KPN_03118	-	sulfite reductase subunit beta
3059	 60.33	0	3415380..3417179	-	599	152971641	cysJ	KPN_03119	-	sulfite reductase subunit alpha
3060	 57.10	0	3417496..3417861	+	121	152971642	ygcM	KPN_03120	-	putative 6-pyruvoyl tetrahydrobiopterin synthase
3061	 57.82	0	3417902..3418579	-	225	152971643	ygcF	KPN_03121	-	coenzyme PQQ synthesis protein
3062	 57.39	0	3419049..3420158	+	369	152971644	-	KPN_03122	-	hemolysin F
3063	 53.73	0	3420222..3421520	-	432	152971645	eno	KPN_03123	-	phosphopyruvate hydratase
3064	 55.56	0	3421602..3423239	-	545	152971646	pyrG	KPN_03124	-	CTP synthetase
3065	 57.83	0	3423520..3424311	-	263	152971647	mazG	KPN_03125	-	nucleoside triphosphate pyrophosphohydrolase
3066	 59.38	0	3424423..3426660	-	745	152971648	relA	KPN_03126	-	GDP/GTP pyrophosphokinase
3067	 60.54	0	3426782..3428086	-	434	152971649	rumA	KPN_03127	-	23S rRNA 5-methyluridine methyltransferase
3068	 58.45	0	3428200..3430950	+	916	152971650	barA	KPN_03128	-	hybrid sensory histidine kinase BarA
3069	 63.86	+1	3431108..3432247	-	379	152971651	garK	KPN_03129	-	glycerate kinase I
3070	 60.85	0	3432320..3433660	-	446	152971652	gudD	KPN_03130	-	(D)-glucarate dehydratase 1
3071	 64.53	+1	3433678..3434985	-	435	152971653	gudX	KPN_03131	-	putative (D)-glucarate dehydratase 2
3072	 57.87	0	3435021..3436373	-	450	152971654	gudP	KPN_03132	-	MFS superfamily D-glucarate permease
3073	 60.14	0	3436845..3437288	-	147	152971655	yqcA	KPN_03133	-	flavodoxin
3074	 62.26	0	3437293..3438087	-	264	152971656	yqcB	KPN_03134	-	tRNA pseudouridine synthase C
3075	 62.42	0	3438087..3438416	-	109	152971657	yqcC	KPN_03135	-	hypothetical protein
3076	 57.33	0	3439048..3439593	-	181	152971658	syd	KPN_03136	-	SecY interacting protein Syd
3077	 58.75	0	3439662..3440507	+	281	152971659	yqcD	KPN_03137	-	7-cyano-7-deazaguanine reductase
3078	 59.72	0	3440649..3441986	+	445	152971660	ygdH	KPN_03138	-	hypothetical protein
3079	 56.74	0	3442496..3443785	+	429	152971661	sdaC	KPN_03139	-	serine transporter
3080	 61.92	0	3443851..3445218	+	455	152971662	sdaB	KPN_03140	-	L-serine deaminase 2
3081	 62.53	0	3445357..3446298	+	313	152971663	-	KPN_03141	-	putative ABC-type transport protein
3082	 58.65	0	3447578..3448999	-	473	152971664	-	KPN_03142	-	putative general substrate transporter
3083	 56.66	0	3449193..3450071	-	292	152971665	-	KPN_03143	-	putative ABC-type metal ion transport system, periplasmic component/surface antigen
3084	 62.23	0	3450068..3450766	-	232	152971666	-	KPN_03144	-	putative ABC-type metal ion transport system, permease component
3085	 67.17	+1	3451194..3451784	-	196	152971667	-	KPN_03145	-	D- and L-methionine ABC transporter ATP-binding protein
3086	 69.38	+1	3453261..3454658	-	465	152971668	-	KPN_03146	-	putative oxidoreductase
3087	 63.34	0	3454705..3455877	-	390	152971669	-	KPN_03147	-	alkanesulfonate monooxygenase
3088	 65.64	+1	3456149..3458092	+	647	152971670	-	KPN_03148	-	putative transcriptional regulator
3089	 67.72	+1	3458189..3458944	+	251	152971671	xni	KPN_03149	-	exonuclease IX
3090	 63.85	+1	3459003..3460139	-	378	152971672	fucO	KPN_03150	-	L-1,2-propanediol oxidoreductase
3091	 60.03	0	3460179..3460826	-	215	152971673	fucA	KPN_03151	-	L-fuculose phosphate aldolase
3092	 55.66	0	3461432..3462703	+	423	152971674	fucP	KPN_03152	-	L-fucose transporter
3093	 62.27	0	3462736..3464511	+	591	152971675	fucI	KPN_03153	-	L-fucose isomerase
3094	 64.98	+1	3464619..3466037	+	472	152971676	fucK	KPN_03154	-	L-fuculokinase
3095	 57.68	0	3466039..3466461	+	140	152971677	fucU	KPN_03155	-	fucose operon protein
3096	 59.92	0	3466520..3467230	+	236	152971678	fucR	KPN_03156	-	DNA-binding transcriptional activator FucR
3097	 59.13	0	3467279..3468379	-	366	152971679	ygdE	KPN_03157	-	putative RNA 2'-O-ribose methyltransferase
3098	 54.55	0	3468372..3468767	-	131	152971680	ygdD	KPN_03158	-	hypothetical protein
3099	 53.05	0	3468787..3469704	-	305	152971681	gcvA	KPN_03159	-	DNA-binding transcriptional activator GcvA
3100	 49.78	-1	3470056..3470286	-	76	152971682	ygdI	KPN_03160	-	hypothetical protein
3101	 65.92	+1	3470478..3471683	+	401	152971683	csdA	KPN_03161	-	cysteine sulfinate desulfinase
3102	 63.66	0	3471683..3472114	+	143	152971684	ygdK	KPN_03162	-	hypothetical protein
3103	 61.92	0	3472157..3472978	-	273	152971685	ygdL	KPN_03163	-	putative enzyme
3104	 59.93	0	3473066..3474163	-	365	152971686	mltA	KPN_03164	-	murein transglycosylase A
3105	 55.03	0	3476167..3477507	+	446	152971687	-	KPN_03168	-	hypothetical protein
3106	 59.27	0	3478172..3479875	+	567	152971688	-	KPN_03169	-	hypothetical protein
3107	 56.81	0	3480091..3482646	+	851	152971689	-	KPN_03170	-	hypothetical protein
3108	 45.94	-2	3482649..3484100	+	483	152971690	-	KPN_03171	-	hypothetical protein
3109	 52.28	0	3484185..3485213	+	342	152971691	-	KPN_03172	-	hypothetical protein
3110	 37.90	-2	3485322..3485693	+	123	152971692	-	KPN_03173	-	hypothetical protein
3111	 38.95	-2	3485999..3487138	+	379	152971693	-	KPN_03174	-	hypothetical protein
3112	 59.91	0	3487423..3490500	+	1025	152971694	-	KPN_03175	-	hypothetical protein
3113	 59.54	0	3490493..3490885	+	130	152971695	-	KPN_03176	-	hypothetical protein
3114	 41.54	-2	3491456..3492418	+	320	152971696	-	KPN_03177	-	hypothetical protein
3115	 36.52	-2	3492511..3493107	+	198	152971697	-	KPN_03178	-	hypothetical protein
3116	 56.79	0	3493264..3495024	+	586	152971698	-	KPN_03179	-	hypothetical protein
3117	 56.42	0	3494988..3496070	+	360	152971699	-	KPN_03180	-	hypothetical protein
3118	 53.29	0	3496588..3497013	+	141	152971700	-	KPN_03181	-	hypothetical protein
3119	 66.00	+1	3497239..3498294	-	351	152971701	cobT	KPN_03182	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
3120	 63.55	0	3498338..3498883	-	181	152971702	cobU	KPN_03183	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
3121	 64.04	+1	3498877..3500400	-	507	152971703	cbiP	KPN_03184	-	cobyric acid synthase
3122	 62.30	0	3500397..3501221	-	274	152971704	cbiO	KPN_03185	-	cobalt transporter ATP-binding subunit
3123	 62.09	0	3501230..3501907	-	225	152971705	cboQ	KPN_03186	-	hypothetical protein
3124	 58.16	0	3501894..3502175	-	93	152971706	cbiN	KPN_03187	-	cobalt transport protein CbiN
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.