IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2904	 54.21	0	3248732..3249574	-	280	152971486	-	KPN_02959	-	putative cytoplasmic protein
2905	 58.13	0	3249571..3251046	-	491	152971487	-	KPN_02960	-	putative phosphotransferase system IIC component
2906	 57.92	0	3251320..3252999	+	559	152971488	-	KPN_02961	-	putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component
2907	 53.63	0	3253350..3253886	-	178	152971489	-	KPN_02962	-	putative bifunctional deaminase-reductase
2908	 45.18	-2	3254111..3256600	-	829	152971490	-	KPN_02963	-	hypothetical protein
2909	 47.25	-1	3256978..3258867	-	629	152971491	-	KPN_02964	-	hypothetical protein
2910	 55.68	0	3259607..3260407	-	266	152971492	-	KPN_02965	-	hypothetical protein
2911	 60.67	0	3260532..3261398	-	288	152971493	-	KPN_02966	-	LysR family transcriptional regulator
2912	 55.67	0	3261628..3262200	+	190	152971494	-	KPN_02967	-	hypothetical protein
2913	 57.65	0	3262211..3262576	-	121	152971495	-	KPN_02968	-	putative helix-turn-helix, AraC type
2914	 59.95	0	3262907..3264082	+	391	152971496	-	KPN_02969	-	putative secretion protein HlyD
2915	 61.18	0	3264106..3267258	+	1050	152971497	-	KPN_02970	-	integral transmembrane protein; acridine resistance
2916	 56.46	0	3267328..3267807	-	159	152971498	-	KPN_02971	-	putative transcriptional regulator
2917	 59.65	0	3268206..3269117	-	303	152971499	-	KPN_02972	-	transcriptional regulator LysR
2918	 61.62	0	3269233..3270183	+	316	152971500	-	KPN_02973	-	putative arginase/agmatinase/formiminoglutamase
2919	 65.62	+1	3270194..3271057	+	287	152971501	-	KPN_02974	-	putative xylose isomerase-like protein
2920	 61.05	0	3271054..3272121	+	355	152971502	-	KPN_02975	-	putative oxidoreductase
2921	 60.22	0	3272138..3272944	+	268	152971503	-	KPN_02976	-	extracellular solute-binding family protein 3
2922	 61.67	0	3272975..3274495	+	506	152971504	-	KPN_02977	-	glutamine ABC transporter ATP-binding component
2923	 62.69	0	3274496..3275224	+	242	152971505	-	KPN_02978	-	L-fuculose phosphate aldolase
2924	 65.81	+1	3275230..3276162	+	310	152971506	-	KPN_02979	-	2-ketoacid reductase
2925	 63.77	+1	3276223..3277017	+	264	152971507	-	KPN_02980	-	putative short-chain dehydrogenase/reductase
2926	 60.06	0	3277173..3277793	+	206	152971508	-	KPN_02981	-	putative transport protein
2927	 59.25	0	3277849..3278697	-	282	152971509	-	KPN_02982	-	hypothetical protein
2928	 39.81	-2	3279051..3279668	+	205	152971510	fimZ	KPN_02983	-	putative transcriptional regulator of fimbrial expression
2929	 50.00	-1	3279799..3280320	+	173	152971511	fimA	KPN_02984	-	major type 1 subunit fimbrin (pilin)
2930	 47.53	-1	3280362..3281030	+	222	152971512	fim	KPN_02985	-	pilin chaperone
2931	 55.59	0	3281060..3283597	+	845	152971513	fimD	KPN_02986	-	outer membrane protein; export and assembly of type 1 fimbriae
2932	 61.28	0	3284641..3285735	-	364	152971514	fim	KPN_02987	-	putative fimbrial-like protein
2933	 62.41	0	3285743..3288232	-	829	152971515	fimD	KPN_02988	-	putative export and assembly of type 1 fimbriae, usher
2934	 56.11	0	3288335..3288997	-	220	152971516	fim	KPN_02989	-	putative chaperone
2935	 55.15	0	3289192..3289773	-	193	152971517	fim	KPN_02990	-	putative fimbrial-like protein
2936	 60.62	0	3290475..3291995	-	506	152971518	aldB	KPN_02991	-	aldehyde dehydrogenase B (lactaldehyde dehydrogenase)
2937	 65.77	+1	3292260..3294047	+	595	152971519	prpR	KPN_02992	-	putative helix-turn-helix, Fis-type
2938	 65.24	+1	3294130..3295038	-	302	152971520	yafC	KPN_02993	-	LysR family transcriptional regulator
2939	 63.37	0	3295142..3295747	+	201	152971521	acpD	KPN_02994	-	acyl carrier protein phosphodiesterase
2940	 63.00	0	3295823..3296122	+	99	152971522	ygaV	KPN_02995	-	hypothetical protein
2941	 64.84	+1	3296130..3296675	+	181	152971523	ygaP	KPN_02996	-	putative phosphatase
2942	 53.27	0	3296656..3297558	-	300	152971524	-	KPN_02997	-	hypothetical protein
2943	 51.65	-1	3298016..3298408	-	130	152971525	stpA	KPN_02998	-	DNA binding protein, nucleoid-associated
2944	 57.33	0	3299146..3299595	+	149	152971526	ygaW	KPN_02999	-	hypothetical protein
2945	 49.59	-1	3299681..3300043	-	120	152971527	ygaC	KPN_03000	-	hypothetical protein
2946	 56.90	0	3300194..3300541	+	115	152971528	ygaM	KPN_03001	-	hypothetical protein
2947	 65.73	+1	3300762..3302036	-	424	152971529	-	KPN_03002	-	GntR transcriptional regulator
2948	 59.03	0	3302125..3302556	+	143	152971530	-	KPN_03003	-	hypothetical protein
2949	 66.13	+1	3302800..3302985	+	61	152971531	nrdH	KPN_03004	-	glutaredoxin-like protein; hydrogen donor
2950	 60.10	0	3302982..3303392	+	136	152971532	nrdI	KPN_03005	-	ribonucleotide reductase stimulatory protein
2951	 61.58	0	3303425..3305506	+	693	152971533	nrdE	KPN_03006	-	ribonucleotide-diphosphate reductase subunit alpha
2952	 57.11	0	3305517..3306479	+	320	152971534	nrdF	KPN_03007	-	ribonucleotide-diphosphate reductase subunit beta
2953	 54.11	0	3306836..3308038	+	400	152971535	proV	KPN_03008	-	ATP-binding component of transport system for glycine, betaine and proline
2954	 65.36	+1	3308031..3309098	+	355	152971536	proW	KPN_03009	-	glycine betaine transporter membrane protein
2955	 57.83	0	3309192..3310175	+	327	152971537	proX	KPN_03010	-	glycine betaine transporter periplasmic subunit
2956	 62.52	0	3310354..3311100	+	248	152971538	ygaZ	KPN_03011	-	putative amino acid transport protein
2957	 63.10	0	3311090..3311425	+	111	152971539	ygaH	KPN_03012	-	hypothetical protein
2958	 52.78	0	3311615..3312046	+	143	152971540	emrR	KPN_03013	-	transcriptional repressor MprA
2959	 58.99	0	3312172..3313344	+	390	152971541	emrA	KPN_03014	-	multidrug resistance secretion protein
2960	 61.14	0	3313360..3314898	+	512	152971542	emrB	KPN_03015	-	multidrug resistance protein membrane translocase
2961	 63.39	0	3315035..3316711	+	558	152971543	-	KPN_03016	-	putative isopropylmalate/homocitrate/citramalate synthase
2962	 66.41	+1	3316690..3317457	-	255	152971544	-	KPN_03017	-	putative helix-turn-helix, AraC type
2963	 56.39	0	3317510..3317986	-	158	152971545	ygaG	KPN_03018	-	S-ribosylhomocysteinase
2964	 57.68	0	3318182..3319738	-	518	152971546	gshA	KPN_03019	-	glutamate--cysteine ligase
2965	 58.04	0	3319805..3320233	-	142	152971547	yqaA	KPN_03020	-	putative integral membrane protein
2966	 61.38	0	3320230..3320796	-	188	152971548	yqaB	KPN_03021	-	fructose-1-phosphatase
2967	 52.70	0	3320922..3321236	-	104	152971549	-	KPN_03022	-	hypothetical protein
2968	 47.85	-1	3322756..3322941	-	61	152971550	csrA	KPN_03028	-	carbon storage regulator
2969	 59.06	0	3323305..3325932	-	875	152971551	alaS	KPN_03029	-	alanyl-tRNA synthetase
2970	 59.28	0	3326183..3326683	-	166	152971552	recX	KPN_03030	-	recombination regulator RecX
2971	 56.75	0	3326751..3327809	-	352	152971553	recA	KPN_03031	-	recombinase A
2972	 62.45	0	3327900..3328397	-	165	152971554	ygaD	KPN_03032	-	competence damage-inducible protein A
2973	 59.64	0	3328537..3329418	-	293	152971555	-	KPN_03033	-	putative periplasmic solute binding protein
2974	 64.47	+1	3329423..3330286	-	287	152971556	-	KPN_03034	-	putative ABC transporter membrane protein
2975	 65.54	+1	3330283..3330993	-	236	152971557	-	KPN_03035	-	putative ABC transporter ATP-binding protein
2976	 62.02	0	3331332..3332321	-	329	152971558	mltB	KPN_03036	-	murein hydrolase B
2977	 57.62	0	3332688..3333251	+	187	152971559	srlA	KPN_03037	-	PTS family enzyme IIC, glucitol/sorbitol-specific
2978	 62.69	0	3333248..3334228	+	326	152971560	srlE	KPN_03038	-	PTS family enzyme IIBC, glucitol/sorbitol-specific
2979	 62.81	0	3334242..3334604	+	120	152971561	srlB	KPN_03039	-	glucitol/sorbitol-specific PTS system component IIA
2980	 59.62	0	3334617..3335396	+	259	152971562	srlD	KPN_03040	-	sorbitol-6-phosphate dehydrogenase
2981	 60.88	0	3335565..3335858	-	97	152971563	-	KPN_03041	-	hypothetical protein
2982	 53.75	0	3335979..3336752	+	257	152971564	srlR	KPN_03042	-	DNA-bindng transcriptional repressor SrlR
2983	 62.53	0	3336745..3337710	+	321	152971565	gutQ	KPN_03043	-	D-arabinose 5-phosphate isomerase
2984	 63.83	+1	3337673..3339223	-	516	152971566	ygaA	KPN_03044	-	anaerobic nitric oxide reductase transcription regulator
2985	 57.83	0	3339411..3340859	+	482	152971567	norV	KPN_03045	-	anaerobic nitric oxide reductase flavorubredoxin
2986	 61.46	0	3340856..3341989	+	377	152971568	ygbD	KPN_03046	-	nitric oxide reductase
2987	 62.52	0	3342086..3343099	-	337	152971569	-	KPN_03047	-	putative high-affinity nickel-transporter
2988	 67.11	+1	3343096..3345330	-	744	152971570	hypF	KPN_03048	-	hydrogenase maturation protein
2989	 60.61	0	3345339..3345866	-	175	152971571	hydN	KPN_03049	-	electron transport protein HydN
2990	 62.13	0	3346003..3347016	-	337	152971572	ascG	KPN_03050	-	ascBF operon repressor
2991	 62.51	0	3347284..3348726	+	480	152971573	ascF	KPN_03051	-	cellobiose/arbutin/salicin-specific PTS system components IIBC
2992	 58.25	0	3348753..3350177	+	474	152971574	ascB	KPN_03052	-	cryptic 6-phospho-beta-glucosidase
2993	 63.75	+1	3350359..3350667	+	102	152971575	-	KPN_03053	-	hypothetical protein
2994	 61.19	0	3350664..3351101	-	145	152971576	hycI	KPN_03054	-	hydrogenase 3 maturation protease
2995	 59.61	0	3351127..3351537	-	136	152971577	hycH	KPN_03055	-	processing of HycE (part of the FHL complex)
2996	 61.98	0	3351534..3352301	-	255	152971578	hycG	KPN_03056	-	hypothetical protein
2997	 60.41	0	3352301..3352843	-	180	152971579	hycF	KPN_03057	-	formate hydrogenlyase complex iron-sulfur subunit
2998	 61.11	0	3352853..3354562	-	569	152971580	hycE	KPN_03058	-	hydrogenase 3, large subunit (part of FHL complex)
2999	 62.66	0	3354579..3355502	-	307	152971581	hycD	KPN_03059	-	hydrogenase 3, membrane subunit (part of FHL complex)
3000	 65.41	+1	3355505..3357331	-	608	152971582	hycC	KPN_03060	-	formate hydrogenlyase subunit 3
3001	 64.51	+1	3357328..3357837	-	169	152971583	hycB	KPN_03061	-	hydrogenase-3, Fe-S subunit (part of FHL complex)
3002	 56.67	0	3358019..3358468	-	149	152971584	hycA	KPN_03062	-	formate hydrogenlyase regulatory protein HycA
3003	 60.29	0	3358678..3359022	+	114	152971585	hypA	KPN_03063	-	hydrogenase nickel incorporation protein
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.