IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2861	 60.25	0	3207586..3208317	-	243	152971443	r'rH	KPN_02916	-	hypothetical protein
2862	 56.78	0	3208314..3209294	-	326	152971444	rluD	KPN_02917	-	23S rRNA pseudouridine synthase D
2863	 54.47	0	3209426..3210163	+	245	152971445	yfiO	KPN_02918	-	outer membrane protein assembly complex subunit YfiO
2864	 50.30	-1	3210440..3210769	+	109	152971446	yfiA	KPN_02919	-	translation inhibitor protein RaiA
2865	 59.09	0	3211024..3212184	+	386	152971447	pheA	KPN_02920	-	bifunctional chorismate mutase/prephenate dehydratase
2866	 60.94	0	3212181..3213053	-	290	152971448	-	KPN_02921	-	putative cytoplasmic protein
2867	 59.80	0	3213116..3214237	-	373	152971449	tyrA	KPN_02922	-	bifunctional chorismate mutase/prephenate dehydrogenase
2868	 58.45	0	3214247..3215317	-	356	152971450	aroF	KPN_02923	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2869	 49.81	-1	3215636..3216169	+	177	152971451	yfiR	KPN_02924	-	hypothetical protein
2870	 58.01	0	3216162..3217385	+	407	152971452	yfiN	KPN_02925	-	hypothetical protein
2871	 57.81	0	3217498..3217881	+	127	152971453	yfiB	KPN_02926	-	putative outer membrane lipoprotein
2872	 64.19	+1	3217890..3219260	-	456	152971454	-	KPN_02927	-	putative iron-regulated membrane protei
2873	 61.44	0	3219317..3219775	-	152	152971455	-	KPN_02928	-	hypothetical protein
2874	 48.28	-1	3219895..3220242	-	115	152971456	rplS	KPN_02929	-	50S ribosomal protein L19
2875	 54.17	0	3220282..3221049	-	255	152971457	trmD	KPN_02930	-	tRNA (guanine-N(1)-)-methyltransferase
2876	 50.27	-1	3221081..3221629	-	182	152971458	rimM	KPN_02931	-	16S rRNA-processing protein
2877	 54.22	0	3221648..3221896	-	82	152971459	rpsP	KPN_02932	-	30S ribosomal protein S16
2878	 59.19	0	3222156..3223520	-	454	152971460	ffh	KPN_02933	-	signal recognition particle protein
2879	 56.82	0	3223684..3224475	+	263	152971461	ypjD	KPN_02934	-	hypothetical protein
2880	 56.80	0	3224495..3225781	+	428	152971462	yfjD	KPN_02935	-	hypothetical protein
2881	 56.35	0	3225901..3226491	-	196	152971463	grpE	KPN_02936	-	heat shock protein GrpE
2882	 57.68	0	3226616..3227494	+	292	152971464	ppnK	KPN_02937	-	inorganic polyphosphate/ATP-NAD kinase
2883	 62.52	0	3227581..3229242	+	553	152971465	recN	KPN_02938	-	recombination and repair protein
2884	 52.63	0	3229390..3229731	+	113	152971466	smpA	KPN_02939	-	hypothetical protein
2885	 58.42	0	3229797..3230087	-	96	152971467	yfjF	KPN_02940	-	hypothetical protein
2886	 52.51	0	3230077..3230514	-	145	152971468	yfjG	KPN_02941	-	hypothetical protein
2887	 55.69	0	3230664..3231146	+	160	152971469	smpB	KPN_02942	-	SsrA-binding protein
2888	 56.49	0	3231820..3233067	+	415	152971470	intA	KPN_02943	-	putative integrase
2889	 56.74	0	3233069..3233713	+	214	152971471	-	KPN_02944	-	hypothetical protein
2890	 33.13	-2	3233876..3238348	+	1490	152971472	-	KPN_02945	-	hypothetical protein
2891	 55.09	0	3238767..3238982	+	71	152971473	-	KPN_02946	-	hypothetical protein
2892	 63.92	+1	3239415..3240143	+	242	152971474	-	KPN_02947	-	hypothetical protein
2893	 38.61	-2	3240525..3242477	-	650	152971475	-	KPN_02948	-	hypothetical protein
2894	 44.67	-2	3242611..3242910	-	99	152971476	-	KPN_02949	-	putative transcriptional regulator
2895	 57.19	0	3243062..3243346	+	94	152971477	-	KPN_02950	-	putative cytoplasmic protein
2896	 60.73	0	3243459..3243980	+	173	152971478	-	KPN_02951	-	putative PTS system glucitol/sorbitol-specific enzyme II
2897	 60.80	0	3243977..3244351	+	124	152971479	-	KPN_02952	-	putative glucitol-specific PTS enzyme III
2898	 62.79	0	3244348..3245328	+	326	152971480	-	KPN_02953	-	putative glucitol-specific PTS enzyme III
2899	 61.36	0	3245336..3245881	+	181	152971481	-	KPN_02954	-	putative dehydrogenase
2900	 59.75	0	3245886..3246362	+	158	152971482	-	KPN_02955	-	putative dehydrogenase
2901	 33.33	-2	3246498..3247382	-	294	152971483	-	KPN_02956	-	hypothetical protein
2902	 54.40	0	3247510..3248145	-	211	152971484	-	KPN_02957	-	putative hexulose 6 phosphate synthase
2903	 57.14	0	3248169..3248735	-	188	152971485	-	KPN_02958	-	putative sugar phosphate aminotransferase
2904	 54.21	0	3248732..3249574	-	280	152971486	-	KPN_02959	-	putative cytoplasmic protein
2905	 58.13	0	3249571..3251046	-	491	152971487	-	KPN_02960	-	putative phosphotransferase system IIC component
2906	 57.92	0	3251320..3252999	+	559	152971488	-	KPN_02961	-	putative dipeptide/oligopeptide/nickel ABC-type transport system periplasmic component
2907	 53.63	0	3253350..3253886	-	178	152971489	-	KPN_02962	-	putative bifunctional deaminase-reductase
2908	 45.18	-2	3254111..3256600	-	829	152971490	-	KPN_02963	-	hypothetical protein
2909	 47.25	-1	3256978..3258867	-	629	152971491	-	KPN_02964	-	hypothetical protein
2910	 55.68	0	3259607..3260407	-	266	152971492	-	KPN_02965	-	hypothetical protein
2911	 60.67	0	3260532..3261398	-	288	152971493	-	KPN_02966	-	LysR family transcriptional regulator
2912	 55.67	0	3261628..3262200	+	190	152971494	-	KPN_02967	-	hypothetical protein
2913	 57.65	0	3262211..3262576	-	121	152971495	-	KPN_02968	-	putative helix-turn-helix, AraC type
2914	 59.95	0	3262907..3264082	+	391	152971496	-	KPN_02969	-	putative secretion protein HlyD
2915	 61.18	0	3264106..3267258	+	1050	152971497	-	KPN_02970	-	integral transmembrane protein; acridine resistance
2916	 56.46	0	3267328..3267807	-	159	152971498	-	KPN_02971	-	putative transcriptional regulator
2917	 59.65	0	3268206..3269117	-	303	152971499	-	KPN_02972	-	transcriptional regulator LysR
2918	 61.62	0	3269233..3270183	+	316	152971500	-	KPN_02973	-	putative arginase/agmatinase/formiminoglutamase
2919	 65.62	+1	3270194..3271057	+	287	152971501	-	KPN_02974	-	putative xylose isomerase-like protein
2920	 61.05	0	3271054..3272121	+	355	152971502	-	KPN_02975	-	putative oxidoreductase
2921	 60.22	0	3272138..3272944	+	268	152971503	-	KPN_02976	-	extracellular solute-binding family protein 3
2922	 61.67	0	3272975..3274495	+	506	152971504	-	KPN_02977	-	glutamine ABC transporter ATP-binding component
2923	 62.69	0	3274496..3275224	+	242	152971505	-	KPN_02978	-	L-fuculose phosphate aldolase
2924	 65.81	+1	3275230..3276162	+	310	152971506	-	KPN_02979	-	2-ketoacid reductase
2925	 63.77	+1	3276223..3277017	+	264	152971507	-	KPN_02980	-	putative short-chain dehydrogenase/reductase
2926	 60.06	0	3277173..3277793	+	206	152971508	-	KPN_02981	-	putative transport protein
2927	 59.25	0	3277849..3278697	-	282	152971509	-	KPN_02982	-	hypothetical protein
2928	 39.81	-2	3279051..3279668	+	205	152971510	fimZ	KPN_02983	-	putative transcriptional regulator of fimbrial expression
2929	 50.00	-1	3279799..3280320	+	173	152971511	fimA	KPN_02984	-	major type 1 subunit fimbrin (pilin)
2930	 47.53	-1	3280362..3281030	+	222	152971512	fim	KPN_02985	-	pilin chaperone
2931	 55.59	0	3281060..3283597	+	845	152971513	fimD	KPN_02986	-	outer membrane protein; export and assembly of type 1 fimbriae
2932	 61.28	0	3284641..3285735	-	364	152971514	fim	KPN_02987	-	putative fimbrial-like protein
2933	 62.41	0	3285743..3288232	-	829	152971515	fimD	KPN_02988	-	putative export and assembly of type 1 fimbriae, usher
2934	 56.11	0	3288335..3288997	-	220	152971516	fim	KPN_02989	-	putative chaperone
2935	 55.15	0	3289192..3289773	-	193	152971517	fim	KPN_02990	-	putative fimbrial-like protein
2936	 60.62	0	3290475..3291995	-	506	152971518	aldB	KPN_02991	-	aldehyde dehydrogenase B (lactaldehyde dehydrogenase)
2937	 65.77	+1	3292260..3294047	+	595	152971519	prpR	KPN_02992	-	putative helix-turn-helix, Fis-type
2938	 65.24	+1	3294130..3295038	-	302	152971520	yafC	KPN_02993	-	LysR family transcriptional regulator
2939	 63.37	0	3295142..3295747	+	201	152971521	acpD	KPN_02994	-	acyl carrier protein phosphodiesterase
2940	 63.00	0	3295823..3296122	+	99	152971522	ygaV	KPN_02995	-	hypothetical protein
2941	 64.84	+1	3296130..3296675	+	181	152971523	ygaP	KPN_02996	-	putative phosphatase
2942	 53.27	0	3296656..3297558	-	300	152971524	-	KPN_02997	-	hypothetical protein
2943	 51.65	-1	3298016..3298408	-	130	152971525	stpA	KPN_02998	-	DNA binding protein, nucleoid-associated
2944	 57.33	0	3299146..3299595	+	149	152971526	ygaW	KPN_02999	-	hypothetical protein
2945	 49.59	-1	3299681..3300043	-	120	152971527	ygaC	KPN_03000	-	hypothetical protein
2946	 56.90	0	3300194..3300541	+	115	152971528	ygaM	KPN_03001	-	hypothetical protein
2947	 65.73	+1	3300762..3302036	-	424	152971529	-	KPN_03002	-	GntR transcriptional regulator
2948	 59.03	0	3302125..3302556	+	143	152971530	-	KPN_03003	-	hypothetical protein
2949	 66.13	+1	3302800..3302985	+	61	152971531	nrdH	KPN_03004	-	glutaredoxin-like protein; hydrogen donor
2950	 60.10	0	3302982..3303392	+	136	152971532	nrdI	KPN_03005	-	ribonucleotide reductase stimulatory protein
2951	 61.58	0	3303425..3305506	+	693	152971533	nrdE	KPN_03006	-	ribonucleotide-diphosphate reductase subunit alpha
2952	 57.11	0	3305517..3306479	+	320	152971534	nrdF	KPN_03007	-	ribonucleotide-diphosphate reductase subunit beta
2953	 54.11	0	3306836..3308038	+	400	152971535	proV	KPN_03008	-	ATP-binding component of transport system for glycine, betaine and proline
2954	 65.36	+1	3308031..3309098	+	355	152971536	proW	KPN_03009	-	glycine betaine transporter membrane protein
2955	 57.83	0	3309192..3310175	+	327	152971537	proX	KPN_03010	-	glycine betaine transporter periplasmic subunit
2956	 62.52	0	3310354..3311100	+	248	152971538	ygaZ	KPN_03011	-	putative amino acid transport protein
2957	 63.10	0	3311090..3311425	+	111	152971539	ygaH	KPN_03012	-	hypothetical protein
2958	 52.78	0	3311615..3312046	+	143	152971540	emrR	KPN_03013	-	transcriptional repressor MprA
2959	 58.99	0	3312172..3313344	+	390	152971541	emrA	KPN_03014	-	multidrug resistance secretion protein
2960	 61.14	0	3313360..3314898	+	512	152971542	emrB	KPN_03015	-	multidrug resistance protein membrane translocase
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.