IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2804	 60.84	0	3138474..3139760	-	428	152971386	pepB	KPN_02855	-	aminopeptidase B
2805	 49.75	-1	3139831..3140031	-	66	152971387	yfhJ	KPN_02856	-	hypothetical protein
2806	 56.25	0	3140033..3140368	-	111	152971388	fdx	KPN_02857	-	[2FE-2S] ferredoxin, electron carrer protein
2807	 62.99	0	3140370..3142220	-	616	152971389	hscA	KPN_02858	-	chaperone protein HscA
2808	 55.62	0	3142236..3142751	-	171	152971390	hscB	KPN_02859	-	co-chaperone HscB
2809	 54.01	0	3142826..3143149	-	107	152971391	iscA	KPN_02860	-	iron-sulfur cluster assembly protein
2810	 54.26	0	3143167..3143553	-	128	152971392	iscU	KPN_02861	-	scaffold protein
2811	 55.39	0	3143580..3144794	-	404	152971393	iscS	KPN_02862	-	cysteine desulfurase
2812	 57.72	0	3144973..3145464	-	163	152971394	iscR	KPN_02863	-	DNA-binding transcriptional regulator IscR
2813	 61.36	0	3145699..3146433	-	244	152971395	yfhQ	KPN_02864	-	tRNA/rRNA methyltransferase
2814	 57.46	0	3146554..3147357	+	267	152971396	suhB	KPN_02865	-	inositol monophosphatase
2815	 59.98	0	3147404..3148240	-	278	152971397	ynfA	KPN_02866	-	hypothetical protein
2816	 64.42	+1	3148340..3149320	-	326	152971398	yohM	KPN_02867	-	putative transmembrane protein
2817	 56.17	0	3149311..3149910	-	199	152971399	ycjP	KPN_02868	-	ABC transporter membrane protein
2818	 58.22	0	3150074..3151351	+	425	152971400	csiE	KPN_02869	-	stationary phase inducible protein CsiE
2819	 62.53	0	3151348..3152484	-	378	152971401	hcaT	KPN_02870	-	putative 3-phenylpropionic acid transporter
2820	 54.20	0	3152567..3153400	-	277	152971402	-	KPN_02871	-	hypothetical protein
2821	 57.07	0	3153400..3154899	-	499	152971403	-	KPN_02872	-	putative general substrate transporter
2822	 56.26	0	3154906..3158181	-	1091	152971404	yphG	KPN_02873	-	putative transferase
2823	 55.05	0	3158294..3159490	+	398	152971405	yphH	KPN_02874	-	putative NAGC-like transcriptional regulator
2824	 57.21	0	3159564..3159986	+	140	152971406	yphA	KPN_02875	-	putative transmembrane protein
2825	 56.38	0	3160042..3161295	-	417	152971407	glyA	KPN_02876	-	serine hydroxymethyltransferase
2826	 57.26	0	3161621..3162811	+	396	152971408	hmpA	KPN_02877	-	nitric oxide dioxygenase
2827	 50.15	-1	3162886..3163224	-	112	152971409	glnB	KPN_02878	-	nitrogen regulatory protein P-II 1
2828	 61.66	0	3163290..3164627	-	445	152971410	yfhA	KPN_02879	-	putative 2-component transcriptional regulator
2829	 64.34	+1	3164614..3165300	-	228	152971411	yfhG	KPN_02880	-	hypothetical protein
2830	 60.35	0	3165330..3166769	-	479	152971412	yfhK	KPN_02881	-	putative 2-component sensor protein
2831	 62.76	0	3167342..3171229	-	1295	152971413	purL	KPN_02882	-	phosphoribosylformylglycinamidine synthase
2832	 57.08	0	3171404..3173020	+	538	152971414	yfhD	KPN_02883	-	putative transglycosylase
2833	 62.81	0	3173017..3173535	-	172	152971415	tadA	KPN_02884	-	tRNA-specific adenosine deaminase
2834	 61.79	0	3173589..3174203	-	204	152971416	yfhB	KPN_02885	-	hypothetical protein
2835	 60.54	0	3174438..3175286	+	282	152971417	yfhH	KPN_02886	-	putative DNA-binding transcriptional regulator
2836	 50.57	-1	3175343..3175603	+	86	152971418	yfhL	KPN_02887	-	putative ferredoxin
2837	 60.37	0	3175616..3175996	-	126	152971419	acpS	KPN_02888	-	4'-phosphopantetheinyl transferase
2838	 60.52	0	3175996..3176727	-	243	152971420	pdxJ	KPN_02889	-	pyridoxal phosphate biosynthetic protein PdxJ
2839	 59.76	0	3176739..3177476	-	245	152971421	recO	KPN_02890	-	DNA repair protein RecO
2840	 54.86	0	3177488..3178393	-	301	152971422	era	KPN_02891	-	GTP-binding protein Era
2841	 55.65	0	3178390..3179070	-	226	152971423	rncS	KPN_02892	-	ribonuclease III
2842	 56.51	0	3179320..3180294	-	324	152971424	lepB	KPN_02893	-	lsignal peptidase I
2843	 58.17	0	3180310..3182109	-	599	152971425	lepA	KPN_02894	-	GTP-binding protein LepA
2844	 63.12	0	3182295..3182774	-	159	152971426	rseC	KPN_02895	-	SoxR reducing system protein RseC
2845	 59.40	0	3182771..3183706	-	311	152971427	rseB	KPN_02896	-	periplasmic negative regulator of sigmaE
2846	 57.30	0	3183727..3184377	-	216	152971428	rseA	KPN_02897	-	anti-RNA polymerase sigma factor SigE
2847	 51.56	-1	3184410..3184985	-	191	152971429	rpoE	KPN_02898	-	RNA polymerase sigma factor RpoE
2848	 59.81	0	3185406..3187025	+	539	152971430	nadB	KPN_02899	-	L-aspartate oxidase
2849	 59.89	0	3187010..3187747	-	245	152971431	yfiC	KPN_02900	-	putative enzyme
2850	 58.11	0	3187879..3189210	+	443	152971432	srmB	KPN_02901	-	ATP-dependent RNA helicase SrmB
2851	 54.43	0	3189256..3189639	-	127	152971433	yfiD	KPN_02902	-	autonomous glycyl radical cofactor GrcA
2852	 57.97	0	3189952..3190641	+	229	152971434	ung	KPN_02903	-	uracil-DNA glycosylase
2853	 59.76	0	3190699..3191784	-	361	152971435	yfiF	KPN_02904	-	putative methyltransferase
2854	 56.10	0	3191988..3192413	+	141	152971436	trxC	KPN_02905	-	thioredoxin 2
2855	 62.80	0	3192483..3193181	+	232	152971437	yfiP	KPN_02906	-	hypothetical protein
2856	 59.62	0	3193216..3195867	+	883	152971438	yfiQ	KPN_02907	-	putative acyl-CoA synthetase, NAD(P)-binding, ATP-binding
2857	 53.17	0	3195988..3197343	+	451	152971439	pssA	KPN_02908	-	phosphatidylserine synthase
2858	 58.33	0	3197385..3197708	+	107	152971440	yfiM	KPN_02909	-	hypothetical protein
2859	 57.12	0	3197712..3199010	-	432	152971441	kgtP	KPN_02910	-	alpha-ketoglutarate transporter
2860	 56.72	0	3204883..3207456	-	857	152971442	clpB	KPN_02915	-	protein disaggregation chaperone
2861	 60.25	0	3207586..3208317	-	243	152971443	r'rH	KPN_02916	-	hypothetical protein
2862	 56.78	0	3208314..3209294	-	326	152971444	rluD	KPN_02917	-	23S rRNA pseudouridine synthase D
2863	 54.47	0	3209426..3210163	+	245	152971445	yfiO	KPN_02918	-	outer membrane protein assembly complex subunit YfiO
2864	 50.30	-1	3210440..3210769	+	109	152971446	yfiA	KPN_02919	-	translation inhibitor protein RaiA
2865	 59.09	0	3211024..3212184	+	386	152971447	pheA	KPN_02920	-	bifunctional chorismate mutase/prephenate dehydratase
2866	 60.94	0	3212181..3213053	-	290	152971448	-	KPN_02921	-	putative cytoplasmic protein
2867	 59.80	0	3213116..3214237	-	373	152971449	tyrA	KPN_02922	-	bifunctional chorismate mutase/prephenate dehydrogenase
2868	 58.45	0	3214247..3215317	-	356	152971450	aroF	KPN_02923	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2869	 49.81	-1	3215636..3216169	+	177	152971451	yfiR	KPN_02924	-	hypothetical protein
2870	 58.01	0	3216162..3217385	+	407	152971452	yfiN	KPN_02925	-	hypothetical protein
2871	 57.81	0	3217498..3217881	+	127	152971453	yfiB	KPN_02926	-	putative outer membrane lipoprotein
2872	 64.19	+1	3217890..3219260	-	456	152971454	-	KPN_02927	-	putative iron-regulated membrane protei
2873	 61.44	0	3219317..3219775	-	152	152971455	-	KPN_02928	-	hypothetical protein
2874	 48.28	-1	3219895..3220242	-	115	152971456	rplS	KPN_02929	-	50S ribosomal protein L19
2875	 54.17	0	3220282..3221049	-	255	152971457	trmD	KPN_02930	-	tRNA (guanine-N(1)-)-methyltransferase
2876	 50.27	-1	3221081..3221629	-	182	152971458	rimM	KPN_02931	-	16S rRNA-processing protein
2877	 54.22	0	3221648..3221896	-	82	152971459	rpsP	KPN_02932	-	30S ribosomal protein S16
2878	 59.19	0	3222156..3223520	-	454	152971460	ffh	KPN_02933	-	signal recognition particle protein
2879	 56.82	0	3223684..3224475	+	263	152971461	ypjD	KPN_02934	-	hypothetical protein
2880	 56.80	0	3224495..3225781	+	428	152971462	yfjD	KPN_02935	-	hypothetical protein
2881	 56.35	0	3225901..3226491	-	196	152971463	grpE	KPN_02936	-	heat shock protein GrpE
2882	 57.68	0	3226616..3227494	+	292	152971464	ppnK	KPN_02937	-	inorganic polyphosphate/ATP-NAD kinase
2883	 62.52	0	3227581..3229242	+	553	152971465	recN	KPN_02938	-	recombination and repair protein
2884	 52.63	0	3229390..3229731	+	113	152971466	smpA	KPN_02939	-	hypothetical protein
2885	 58.42	0	3229797..3230087	-	96	152971467	yfjF	KPN_02940	-	hypothetical protein
2886	 52.51	0	3230077..3230514	-	145	152971468	yfjG	KPN_02941	-	hypothetical protein
2887	 55.69	0	3230664..3231146	+	160	152971469	smpB	KPN_02942	-	SsrA-binding protein
2888	 56.49	0	3231820..3233067	+	415	152971470	intA	KPN_02943	-	putative integrase
2889	 56.74	0	3233069..3233713	+	214	152971471	-	KPN_02944	-	hypothetical protein
2890	 33.13	-2	3233876..3238348	+	1490	152971472	-	KPN_02945	-	hypothetical protein
2891	 55.09	0	3238767..3238982	+	71	152971473	-	KPN_02946	-	hypothetical protein
2892	 63.92	+1	3239415..3240143	+	242	152971474	-	KPN_02947	-	hypothetical protein
2893	 38.61	-2	3240525..3242477	-	650	152971475	-	KPN_02948	-	hypothetical protein
2894	 44.67	-2	3242611..3242910	-	99	152971476	-	KPN_02949	-	putative transcriptional regulator
2895	 57.19	0	3243062..3243346	+	94	152971477	-	KPN_02950	-	putative cytoplasmic protein
2896	 60.73	0	3243459..3243980	+	173	152971478	-	KPN_02951	-	putative PTS system glucitol/sorbitol-specific enzyme II
2897	 60.80	0	3243977..3244351	+	124	152971479	-	KPN_02952	-	putative glucitol-specific PTS enzyme III
2898	 62.79	0	3244348..3245328	+	326	152971480	-	KPN_02953	-	putative glucitol-specific PTS enzyme III
2899	 61.36	0	3245336..3245881	+	181	152971481	-	KPN_02954	-	putative dehydrogenase
2900	 59.75	0	3245886..3246362	+	158	152971482	-	KPN_02955	-	putative dehydrogenase
2901	 33.33	-2	3246498..3247382	-	294	152971483	-	KPN_02956	-	hypothetical protein
2902	 54.40	0	3247510..3248145	-	211	152971484	-	KPN_02957	-	putative hexulose 6 phosphate synthase
2903	 57.14	0	3248169..3248735	-	188	152971485	-	KPN_02958	-	putative sugar phosphate aminotransferase
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.