IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2763	 50.96	-1	3085058..3085528	+	156	152971345	bcp	KPN_02814	-	thioredoxin-dependent thiol peroxidase
2764	 58.57	0	3085590..3086651	-	353	152971346	perM	KPN_02815	-	putative permease
2765	 60.66	0	3086874..3088337	+	487	152971347	yfgC	KPN_02816	-	hypothetical protein
2766	 60.28	0	3088347..3088706	+	119	152971348	yfgD	KPN_02817	-	putative arsenate reductase
2767	 58.39	0	3088828..3089745	+	305	152971349	-	KPN_02818	-	putative transposase, YhgA-like protein
2768	 59.73	0	3089742..3090419	-	225	152971350	hda	KPN_02819	-	DNA replication initiation factor
2769	 58.66	0	3090542..3091828	-	428	152971351	uraA	KPN_02820	-	uracil transporter
2770	 56.14	0	3091924..3092550	-	208	152971352	upp	KPN_02821	-	uracil phosphoribosyltransferase
2771	 55.86	0	3092768..3094201	-	477	152971353	-	KPN_02822	-	6-phospho-beta-glucosidase
2772	 57.61	0	3094211..3095104	-	297	152971354	-	KPN_02823	-	putative beta-glucoside kinase
2773	 58.67	0	3095368..3096405	+	345	152971355	purM	KPN_02824	-	phosphoribosylaminoimidazole synthetase
2774	 60.90	0	3096402..3097043	+	213	152971356	purN	KPN_02825	-	phosphoribosylglycinamide formyltransferase
2775	 54.00	0	3097224..3099284	+	686	152971357	ppk	KPN_02826	-	polyphosphate kinase
2776	 58.45	0	3099288..3100820	+	510	152971358	ppx	KPN_02827	-	exopolyphosphatase
2777	 52.98	0	3100874..3103102	-	742	152971359	yfgF	KPN_02828	-	putative cytochrome C-type biogenesis protein
2778	 49.28	-1	3103380..3103586	-	68	152971360	-	KPN_02829	-	putative inner membrane protein
2779	 62.73	0	3103743..3104630	-	295	152971361	-	KPN_02830	-	LysR family transcriptional regulator
2780	 52.53	0	3106365..3107432	+	355	152971362	-	KPN_02831	-	putative arylsulfatase regulator
2781	 51.31	-1	3107416..3109284	+	622	152971363	-	KPN_02832	-	putative phosphatase/sulfatase
2782	 58.75	0	3109379..3110956	-	525	152971364	guaA	KPN_02833	-	bifunctional GMP synthase/glutamine amidotransferase protein
2783	 59.30	0	3111024..3112490	-	488	152971365	guaB	KPN_02834	-	inositol-5-monophosphate dehydrogenase
2784	 61.85	0	3112649..3114040	+	463	152971366	xseA	KPN_02835	-	exodeoxyribonuclease VII large subunit
2785	 64.44	+1	3114292..3115371	-	359	152971367	-	KPN_02836	-	hypothetical protein
2786	 47.34	-1	3116256..3116612	-	118	152971368	-	KPN_02837	-	hypothetical protein
2787	 55.16	0	3116660..3117163	-	167	152971369	-	KPN_02838	-	IS1 transposase
2788	 53.62	0	3117082..3117357	-	91	152971370	-	KPN_02839	-	insertion element protein
2789	 37.71	-2	3117408..3117818	-	136	152971371	-	KPN_02840	-	hypothetical protein
2790	 58.15	0	3118092..3119570	-	492	152971372	yfgK	KPN_02841	-	GTP-binding protein EngA
2791	 58.44	0	3119684..3120862	-	392	152971373	yfgL	KPN_02842	-	outer membrane protein assembly complex subunit YfgL
2792	 54.91	0	3120873..3121493	-	206	152971374	yfgM	KPN_02843	-	hypothetical protein
2793	 59.84	0	3121528..3122772	-	414	152971375	hisS	KPN_02844	-	histidyl-tRNA synthetase
2794	 56.06	0	3122894..3124015	-	373	152971376	ispG	KPN_02845	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2795	 61.35	0	3124042..3125037	-	331	152971377	yfgA	KPN_02846	-	hypothetical protein
2796	 57.67	0	3125314..3126480	-	388	152971378	yfgB	KPN_02847	-	hypothetical protein
2797	 56.25	0	3126833..3127264	-	143	152971379	ndk	KPN_02848	-	nucleoside diphosphate kinase
2798	 66.28	+1	3127425..3129749	-	774	152971380	pbpC	KPN_02849	-	penicillin-binding protein 1C
2799	 63.03	0	3129750..3134699	-	1649	152971381	yfhM	KPN_02850	-	hypothetical protein
2800	 63.05	0	3134905..3135762	+	285	152971382	sseA	KPN_02851	-	3-mercaptopyruvate sulfurtransferase
2801	 52.38	0	3135927..3136577	+	216	152971383	-	KPN_02852	-	hypothetical protein
2802	 59.79	0	3136680..3137522	+	280	152971384	-	KPN_02853	-	hypothetical protein
2803	 57.73	0	3137593..3138375	-	260	152971385	sseB	KPN_02854	-	enhanced serine sensitivity protein SseB
2804	 60.84	0	3138474..3139760	-	428	152971386	pepB	KPN_02855	-	aminopeptidase B
2805	 49.75	-1	3139831..3140031	-	66	152971387	yfhJ	KPN_02856	-	hypothetical protein
2806	 56.25	0	3140033..3140368	-	111	152971388	fdx	KPN_02857	-	[2FE-2S] ferredoxin, electron carrer protein
2807	 62.99	0	3140370..3142220	-	616	152971389	hscA	KPN_02858	-	chaperone protein HscA
2808	 55.62	0	3142236..3142751	-	171	152971390	hscB	KPN_02859	-	co-chaperone HscB
2809	 54.01	0	3142826..3143149	-	107	152971391	iscA	KPN_02860	-	iron-sulfur cluster assembly protein
2810	 54.26	0	3143167..3143553	-	128	152971392	iscU	KPN_02861	-	scaffold protein
2811	 55.39	0	3143580..3144794	-	404	152971393	iscS	KPN_02862	-	cysteine desulfurase
2812	 57.72	0	3144973..3145464	-	163	152971394	iscR	KPN_02863	-	DNA-binding transcriptional regulator IscR
2813	 61.36	0	3145699..3146433	-	244	152971395	yfhQ	KPN_02864	-	tRNA/rRNA methyltransferase
2814	 57.46	0	3146554..3147357	+	267	152971396	suhB	KPN_02865	-	inositol monophosphatase
2815	 59.98	0	3147404..3148240	-	278	152971397	ynfA	KPN_02866	-	hypothetical protein
2816	 64.42	+1	3148340..3149320	-	326	152971398	yohM	KPN_02867	-	putative transmembrane protein
2817	 56.17	0	3149311..3149910	-	199	152971399	ycjP	KPN_02868	-	ABC transporter membrane protein
2818	 58.22	0	3150074..3151351	+	425	152971400	csiE	KPN_02869	-	stationary phase inducible protein CsiE
2819	 62.53	0	3151348..3152484	-	378	152971401	hcaT	KPN_02870	-	putative 3-phenylpropionic acid transporter
2820	 54.20	0	3152567..3153400	-	277	152971402	-	KPN_02871	-	hypothetical protein
2821	 57.07	0	3153400..3154899	-	499	152971403	-	KPN_02872	-	putative general substrate transporter
2822	 56.26	0	3154906..3158181	-	1091	152971404	yphG	KPN_02873	-	putative transferase
2823	 55.05	0	3158294..3159490	+	398	152971405	yphH	KPN_02874	-	putative NAGC-like transcriptional regulator
2824	 57.21	0	3159564..3159986	+	140	152971406	yphA	KPN_02875	-	putative transmembrane protein
2825	 56.38	0	3160042..3161295	-	417	152971407	glyA	KPN_02876	-	serine hydroxymethyltransferase
2826	 57.26	0	3161621..3162811	+	396	152971408	hmpA	KPN_02877	-	nitric oxide dioxygenase
2827	 50.15	-1	3162886..3163224	-	112	152971409	glnB	KPN_02878	-	nitrogen regulatory protein P-II 1
2828	 61.66	0	3163290..3164627	-	445	152971410	yfhA	KPN_02879	-	putative 2-component transcriptional regulator
2829	 64.34	+1	3164614..3165300	-	228	152971411	yfhG	KPN_02880	-	hypothetical protein
2830	 60.35	0	3165330..3166769	-	479	152971412	yfhK	KPN_02881	-	putative 2-component sensor protein
2831	 62.76	0	3167342..3171229	-	1295	152971413	purL	KPN_02882	-	phosphoribosylformylglycinamidine synthase
2832	 57.08	0	3171404..3173020	+	538	152971414	yfhD	KPN_02883	-	putative transglycosylase
2833	 62.81	0	3173017..3173535	-	172	152971415	tadA	KPN_02884	-	tRNA-specific adenosine deaminase
2834	 61.79	0	3173589..3174203	-	204	152971416	yfhB	KPN_02885	-	hypothetical protein
2835	 60.54	0	3174438..3175286	+	282	152971417	yfhH	KPN_02886	-	putative DNA-binding transcriptional regulator
2836	 50.57	-1	3175343..3175603	+	86	152971418	yfhL	KPN_02887	-	putative ferredoxin
2837	 60.37	0	3175616..3175996	-	126	152971419	acpS	KPN_02888	-	4'-phosphopantetheinyl transferase
2838	 60.52	0	3175996..3176727	-	243	152971420	pdxJ	KPN_02889	-	pyridoxal phosphate biosynthetic protein PdxJ
2839	 59.76	0	3176739..3177476	-	245	152971421	recO	KPN_02890	-	DNA repair protein RecO
2840	 54.86	0	3177488..3178393	-	301	152971422	era	KPN_02891	-	GTP-binding protein Era
2841	 55.65	0	3178390..3179070	-	226	152971423	rncS	KPN_02892	-	ribonuclease III
2842	 56.51	0	3179320..3180294	-	324	152971424	lepB	KPN_02893	-	lsignal peptidase I
2843	 58.17	0	3180310..3182109	-	599	152971425	lepA	KPN_02894	-	GTP-binding protein LepA
2844	 63.12	0	3182295..3182774	-	159	152971426	rseC	KPN_02895	-	SoxR reducing system protein RseC
2845	 59.40	0	3182771..3183706	-	311	152971427	rseB	KPN_02896	-	periplasmic negative regulator of sigmaE
2846	 57.30	0	3183727..3184377	-	216	152971428	rseA	KPN_02897	-	anti-RNA polymerase sigma factor SigE
2847	 51.56	-1	3184410..3184985	-	191	152971429	rpoE	KPN_02898	-	RNA polymerase sigma factor RpoE
2848	 59.81	0	3185406..3187025	+	539	152971430	nadB	KPN_02899	-	L-aspartate oxidase
2849	 59.89	0	3187010..3187747	-	245	152971431	yfiC	KPN_02900	-	putative enzyme
2850	 58.11	0	3187879..3189210	+	443	152971432	srmB	KPN_02901	-	ATP-dependent RNA helicase SrmB
2851	 54.43	0	3189256..3189639	-	127	152971433	yfiD	KPN_02902	-	autonomous glycyl radical cofactor GrcA
2852	 57.97	0	3189952..3190641	+	229	152971434	ung	KPN_02903	-	uracil-DNA glycosylase
2853	 59.76	0	3190699..3191784	-	361	152971435	yfiF	KPN_02904	-	putative methyltransferase
2854	 56.10	0	3191988..3192413	+	141	152971436	trxC	KPN_02905	-	thioredoxin 2
2855	 62.80	0	3192483..3193181	+	232	152971437	yfiP	KPN_02906	-	hypothetical protein
2856	 59.62	0	3193216..3195867	+	883	152971438	yfiQ	KPN_02907	-	putative acyl-CoA synthetase, NAD(P)-binding, ATP-binding
2857	 53.17	0	3195988..3197343	+	451	152971439	pssA	KPN_02908	-	phosphatidylserine synthase
2858	 58.33	0	3197385..3197708	+	107	152971440	yfiM	KPN_02909	-	hypothetical protein
2859	 57.12	0	3197712..3199010	-	432	152971441	kgtP	KPN_02910	-	alpha-ketoglutarate transporter
2860	 56.72	0	3204883..3207456	-	857	152971442	clpB	KPN_02915	-	protein disaggregation chaperone
2861	 60.25	0	3207586..3208317	-	243	152971443	r'rH	KPN_02916	-	hypothetical protein
2862	 56.78	0	3208314..3209294	-	326	152971444	rluD	KPN_02917	-	23S rRNA pseudouridine synthase D
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.