IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2692	 50.07	-1	3008728..3009480	+	250	152971274	ypdB	KPN_02737	-	putative 2-component transcriptional regulator
2693	 58.70	0	3009534..3010499	-	321	152971275	glk	KPN_02738	-	glucokinase
2694	 63.53	0	3010787..3011998	+	403	152971276	yfeO	KPN_02739	-	hypothetical protein
2695	 61.93	0	3011995..3013662	-	555	152971277	-	KPN_02740	-	putative pyruvate decarboxylase
2696	 57.89	0	3013873..3014829	+	318	152971278	yghZ	KPN_02741	-	putative oxidoreductase
2697	 58.89	0	3014960..3015319	+	119	152971279	ypeC	KPN_02742	-	hypothetical protein
2698	 58.70	0	3015377..3016618	-	413	152971280	mntH	KPN_02743	-	manganese transport protein MntH
2699	 52.29	0	3016965..3018167	+	400	152971281	nupC	KPN_02744	-	NupC family nucleoside transporter
2700	 51.13	-1	3018174..3020387	-	737	152971282	yfeA	KPN_02745	-	hypothetical protein
2701	 57.23	0	3021024..3021362	+	112	152971283	yfeC	KPN_02748	-	putative negative regulator
2702	 57.76	0	3021366..3021758	+	130	152971284	yfeD	KPN_02749	-	putative negative regulator
2703	 55.32	0	3021810..3023228	-	472	152971285	gltX	KPN_02750	-	glutamyl-tRNA synthetase
2704	 59.86	0	3023971..3024822	-	283	152971286	yfeR	KPN_02755	-	LysR family transcriptional regulator
2705	 57.86	0	3024986..3025984	+	332	152971287	yfeH	KPN_02756	-	putative cytochrome oxidase
2706	 52.97	0	3025981..3026199	-	72	152971288	yfeC	KPN_02757	-	putative negative regulator
2707	 60.96	0	3026201..3028216	-	671	152971289	ligA	KPN_02758	-	NAD-dependent DNA ligase LigA
2708	 60.64	0	3028286..3029347	-	353	152971290	zipA	KPN_02759	-	cell division protein ZipA
2709	 57.35	0	3029578..3030339	+	253	152971291	cysZ	KPN_02760	-	putative sulfate transport protein CysZ
2710	 56.69	0	3030516..3031487	+	323	152971292	cysK	KPN_02761	-	cysteine synthase A
2711	 52.33	0	3031868..3032125	+	85	152971293	ptsH	KPN_02762	-	phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)
2712	 52.03	-1	3032170..3033897	+	575	152971294	ptsI	KPN_02763	-	phosphoenolpyruvate-protein phosphotransferase
2713	 48.82	-1	3033940..3034449	+	169	152971295	crr	KPN_02764	-	glucose-specific PTS system component
2714	 59.58	0	3034491..3034730	-	79	152971296	-	KPN_02765	-	hypothetical protein
2715	 62.40	0	3034727..3035593	-	288	152971297	pdxK	KPN_02766	-	pyridoxal kinase
2716	 64.82	+1	3035676..3036974	+	432	152971298	-	KPN_02767	-	putative regulatory protein
2717	 55.56	0	3037115..3037510	+	131	152971299	-	KPN_02768	-	hypothetical protein
2718	 60.86	0	3037507..3038418	-	303	152971300	cysM	KPN_02769	-	cysteine synthase B
2719	 62.19	0	3038537..3039631	-	364	152971301	cysA	KPN_02770	-	sulfate/thiosulfate transporter subunit
2720	 58.11	0	3039621..3040496	-	291	152971302	cysW	KPN_02771	-	sulfate/thiosulfate transporter permease subunit
2721	 59.83	0	3040496..3041329	-	277	152971303	cysU	KPN_02772	-	sulfate/thiosulfate transporter subunit
2722	 55.36	0	3041329..3042345	-	338	152971304	cysP	KPN_02773	-	thiosulfate transporter subunit
2723	 58.22	0	3042984..3043883	-	299	152971305	yfeX	KPN_02774	-	hypothetical protein
2724	 57.64	0	3043978..3044553	-	191	152971306	yfeY	KPN_02775	-	hypothetical protein
2725	 60.44	0	3044615..3045064	-	149	152971307	yfeZ	KPN_02776	-	hypothetical protein
2726	 56.69	0	3045051..3045491	-	146	152971308	ypeA	KPN_02777	-	putative acetyltransferase
2727	 57.50	0	3045688..3046560	+	290	152971309	amiA	KPN_02778	-	N-acetylmuramoyl-l-alanine amidase I
2728	 61.67	0	3046560..3047459	+	299	152971310	hemF	KPN_02779	-	coproporphyrinogen III oxidase
2729	 59.83	0	3047503..3048555	-	350	152971311	yfeG	KPN_02780	-	transcriptional regulator EutR
2730	 65.46	+1	3048601..3049098	-	165	152971312	yffI	KPN_02781	-	putative carboxysome structural protein, ethanolamine utilization
2731	 60.71	0	3049098..3049718	-	206	152971313	eutL	KPN_02782	-	putative carboxysome structural protein, ethanolamine utilization
2732	 63.89	+1	3049767..3050666	-	299	152971314	eutC	KPN_02783	-	ethanolamine ammonia-lyase small subunit
2733	 59.25	0	3050687..3052048	-	453	152971315	eutB	KPN_02784	-	ethanolamine ammonia-lyase, heavy chain
2734	 64.60	+1	3052060..3053463	-	467	152971316	eutA	KPN_02785	-	reactivating factor for ethanolamine ammonia lyase
2735	 59.53	0	3053460..3054692	-	410	152971317	eutH	KPN_02786	-	ethanolamine utilization; putative transport protein
2736	 65.74	+1	3054892..3056079	-	395	152971318	eutG	KPN_02787	-	ethanolamine utilization enzyme
2737	 62.77	0	3056069..3056914	-	281	152971319	eutJ	KPN_02788	-	ethanolamine utilization protein
2738	 62.82	0	3056918..3058321	-	467	152971320	eutE	KPN_02789	-	ethanolamine utilization protein
2739	 62.85	0	3058333..3058620	-	95	152971321	cchB	KPN_02790	-	detox protein
2740	 62.20	0	3058749..3059039	-	96	152971322	cchA	KPN_02791	-	detox protein
2741	 67.55	+1	3059078..3060094	-	338	152971323	eutI	KPN_02792	-	phosphotransacetylase
2742	 62.59	0	3060084..3060893	-	269	152971324	eutT	KPN_02793	-	putative cobalamin adenosyltransferase in ethanolamine utilization
2743	 61.59	0	3060890..3061579	-	229	152971325	eutQ	KPN_02794	-	putative regulator of ethanolamine utilization
2744	 55.00	0	3061557..3062036	-	159	152971326	eutP	KPN_02795	-	putative ethanolamine utilization protein
2745	 57.14	0	3062049..3062384	-	111	152971327	ypfE	KPN_02796	-	putative carboxysome structural protein, ethanol utilization
2746	 60.57	0	3062603..3064882	-	759	152971328	maeB	KPN_02797	-	malic enzyme
2747	 60.19	0	3065177..3066133	+	318	152971329	talA	KPN_02798	-	transaldolase A
2748	 61.80	0	3066150..3068144	+	664	152971330	tktB	KPN_02799	-	transketolase
2749	 63.52	0	3068134..3069150	-	338	152971331	ypfG	KPN_02800	-	hypothetical protein
2750	 57.62	0	3069244..3069840	-	198	152971332	yffH	KPN_02801	-	MutT-like protein
2751	 64.94	+1	3069899..3071812	-	637	152971333	aegA	KPN_02802	-	putative oxidoreductase Fe-S binding subunit
2752	 60.95	0	3072254..3075367	+	1037	152971334	acrD	KPN_02803	-	aminoglycoside/multidrug efflux system
2753	 54.24	0	3075920..3076273	+	117	152971335	yffB	KPN_02804	-	hypothetical protein
2754	 60.28	0	3076277..3077404	+	375	152971336	dapE	KPN_02805	-	succinyl-diaminopimelate desuccinylase
2755	 46.08	-2	3077431..3077634	+	67	152971337	yhaI	KPN_02806	-	hypothetical protein
2756	 58.33	0	3077683..3078378	-	231	152971338	ypfH	KPN_02807	-	esterase YpfH
2757	 68.06	+1	3078455..3080458	-	667	152971339	ypfI	KPN_02808	-	putative acyl-CoA N-acyltransferase
2758	 60.16	0	3080468..3081343	-	291	152971340	ypfJ	KPN_02809	-	hypothetical protein
2759	 52.80	0	3081463..3082176	-	237	152971341	purC	KPN_02810	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2760	 60.39	0	3082405..3083439	-	344	152971342	nlpB	KPN_02811	-	lipoprotein
2761	 54.27	0	3083456..3084334	-	292	152971343	dapA	KPN_02812	-	dihydrodipicolinate synthase
2762	 52.73	0	3084488..3085054	+	188	152971344	gcvR	KPN_02813	-	glycine cleavage system transcriptional repressor
2763	 50.96	-1	3085058..3085528	+	156	152971345	bcp	KPN_02814	-	thioredoxin-dependent thiol peroxidase
2764	 58.57	0	3085590..3086651	-	353	152971346	perM	KPN_02815	-	putative permease
2765	 60.66	0	3086874..3088337	+	487	152971347	yfgC	KPN_02816	-	hypothetical protein
2766	 60.28	0	3088347..3088706	+	119	152971348	yfgD	KPN_02817	-	putative arsenate reductase
2767	 58.39	0	3088828..3089745	+	305	152971349	-	KPN_02818	-	putative transposase, YhgA-like protein
2768	 59.73	0	3089742..3090419	-	225	152971350	hda	KPN_02819	-	DNA replication initiation factor
2769	 58.66	0	3090542..3091828	-	428	152971351	uraA	KPN_02820	-	uracil transporter
2770	 56.14	0	3091924..3092550	-	208	152971352	upp	KPN_02821	-	uracil phosphoribosyltransferase
2771	 55.86	0	3092768..3094201	-	477	152971353	-	KPN_02822	-	6-phospho-beta-glucosidase
2772	 57.61	0	3094211..3095104	-	297	152971354	-	KPN_02823	-	putative beta-glucoside kinase
2773	 58.67	0	3095368..3096405	+	345	152971355	purM	KPN_02824	-	phosphoribosylaminoimidazole synthetase
2774	 60.90	0	3096402..3097043	+	213	152971356	purN	KPN_02825	-	phosphoribosylglycinamide formyltransferase
2775	 54.00	0	3097224..3099284	+	686	152971357	ppk	KPN_02826	-	polyphosphate kinase
2776	 58.45	0	3099288..3100820	+	510	152971358	ppx	KPN_02827	-	exopolyphosphatase
2777	 52.98	0	3100874..3103102	-	742	152971359	yfgF	KPN_02828	-	putative cytochrome C-type biogenesis protein
2778	 49.28	-1	3103380..3103586	-	68	152971360	-	KPN_02829	-	putative inner membrane protein
2779	 62.73	0	3103743..3104630	-	295	152971361	-	KPN_02830	-	LysR family transcriptional regulator
2780	 52.53	0	3106365..3107432	+	355	152971362	-	KPN_02831	-	putative arylsulfatase regulator
2781	 51.31	-1	3107416..3109284	+	622	152971363	-	KPN_02832	-	putative phosphatase/sulfatase
2782	 58.75	0	3109379..3110956	-	525	152971364	guaA	KPN_02833	-	bifunctional GMP synthase/glutamine amidotransferase protein
2783	 59.30	0	3111024..3112490	-	488	152971365	guaB	KPN_02834	-	inositol-5-monophosphate dehydrogenase
2784	 61.85	0	3112649..3114040	+	463	152971366	xseA	KPN_02835	-	exodeoxyribonuclease VII large subunit
2785	 64.44	+1	3114292..3115371	-	359	152971367	-	KPN_02836	-	hypothetical protein
2786	 47.34	-1	3116256..3116612	-	118	152971368	-	KPN_02837	-	hypothetical protein
2787	 55.16	0	3116660..3117163	-	167	152971369	-	KPN_02838	-	IS1 transposase
2788	 53.62	0	3117082..3117357	-	91	152971370	-	KPN_02839	-	insertion element protein
2789	 37.71	-2	3117408..3117818	-	136	152971371	-	KPN_02840	-	hypothetical protein
2790	 58.15	0	3118092..3119570	-	492	152971372	yfgK	KPN_02841	-	GTP-binding protein EngA
2791	 58.44	0	3119684..3120862	-	392	152971373	yfgL	KPN_02842	-	outer membrane protein assembly complex subunit YfgL
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.