IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2653	 53.00	0	2967113..2967829	-	238	152971235	hisM	KPN_02697	-	histidine and lysine/arginine/ornithine ABC transporter membrane protein
2654	 58.37	0	2967826..2968512	-	228	152971236	hisQ	KPN_02698	-	histidine and lysine/arginine/ornithine transport system ABC transporter membrane protein
2655	 51.98	-1	2968577..2969359	-	260	152971237	hisJ	KPN_02699	-	histidine ABC transporter periplasmic substrate-binding protein
2656	 56.18	0	2969627..2970370	-	247	152971238	argT	KPN_02700	-	lysine-, arginine-, ornithine-binding periplasmic protein
2657	 58.42	0	2970692..2971261	-	189	152971239	ubiX	KPN_02701	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
2658	 56.32	0	2971397..2972914	-	505	152971240	purF	KPN_02702	-	amidophosphoribosyltransferase
2659	 51.94	-1	2972948..2973436	-	162	152971241	cvpA	KPN_02703	-	colicin V production protein
2660	 62.46	0	2973653..2974342	-	229	152971242	dedD	KPN_02704	-	hypothetical protein
2661	 62.49	0	2974332..2975600	-	422	152971243	folC	KPN_02705	-	bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
2662	 59.39	0	2975676..2976596	-	306	152971244	accD	KPN_02706	-	acetyl-CoA carboxylase subunit beta
2663	 55.00	0	2976782..2977441	-	219	152971245	dedA	KPN_02707	-	hypothetical protein
2664	 59.04	0	2977468..2978280	-	270	152971246	truA	KPN_02708	-	tRNA pseudouridine synthase A
2665	 60.65	0	2978280..2979293	-	337	152971247	usg	KPN_02709	-	putative semialdehyde dehydrogenase
2666	 61.01	0	2979357..2980469	-	370	152971248	pdxB	KPN_02710	-	erythronate-4-phosphate dehydrogenase
2667	 64.87	+1	2980691..2981581	+	296	152971249	flk	KPN_02711	-	flagella biosynthesis regulator
2668	 65.75	+1	2981668..2982759	-	363	152971250	yfcJ	KPN_02712	-	hypothetical protein
2669	 59.38	0	2983053..2984273	-	406	152971251	fabB	KPN_02713	-	3-oxoacyl-(acyl carrier protein) synthase I
2670	 63.05	0	2984432..2986420	+	662	152971252	yfcK	KPN_02714	-	5-methylaminomethyl-2-thiouridine methyltransferase
2671	 56.84	0	2986482..2986766	-	94	152971253	yfcL	KPN_02715	-	hypothetical protein
2672	 55.19	0	2986795..2987343	-	182	152971254	yfcM	KPN_02716	-	putative transporting ATPase
2673	 58.64	0	2987343..2988152	-	269	152971255	yfcA	KPN_02717	-	hypothetical protein
2674	 62.55	0	2988152..2988976	-	274	152971256	mepA	KPN_02718	-	penicillin-insensitive murein endopeptidase
2675	 59.94	0	2988979..2990064	-	361	152971257	aroC	KPN_02719	-	chorismate synthase
2676	 56.82	0	2990106..2991110	-	334	152971258	yfcB	KPN_02720	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
2677	 55.43	0	2991206..2991757	+	183	152971259	yfcN	KPN_02721	-	hypothetical protein
2678	 57.82	0	2991778..2992263	-	161	152971260	sixA	KPN_02722	-	phosphohistidine phosphatase
2679	 58.60	0	2992473..2994617	-	714	152971261	yfcX	KPN_02723	-	multifunctional fatty acid oxidation complex subunit alpha
2680	 62.55	0	2994617..2995927	-	436	152971262	yfcY	KPN_02724	-	3-ketoacyl-CoA thiolase
2681	 53.91	0	2996087..2996329	-	80	152971263	yfcZ	KPN_02725	-	hypothetical protein
2682	 58.47	0	2996739..2998067	+	442	152971264	fadL	KPN_02726	-	long-chain fatty acid outer membrane transporter
2683	 56.56	0	2998129..2998890	-	253	152971265	vacJ	KPN_02727	-	lipoprotein precursor
2684	 54.73	0	2999180..3000109	+	309	152971266	yfdC	KPN_02728	-	putative transport protein
2685	 58.39	0	3000522..3001004	+	160	152971267	-	KPN_02730	-	hypothetical protein
2686	 47.73	-1	3001372..3002253	+	293	152971268	-	KPN_02731	-	hypothetical protein
2687	 59.19	0	3002263..3003171	-	302	152971269	-	KPN_02732	-	DNA-binding transcriptional regulator CynR
2688	 58.39	0	3003304..3003762	+	152	152971270	-	KPN_02733	-	putative adenosine deaminase
2689	 64.49	+1	3003759..3004955	+	398	152971271	-	KPN_02734	-	putative cyanate transporter
2690	 57.12	0	3005437..3006651	-	404	152971272	yfdZ	KPN_02735	-	aminotransferase
2691	 55.42	0	3007034..3008731	+	565	152971273	ypdA	KPN_02736	-	putative sensor protein
2692	 50.07	-1	3008728..3009480	+	250	152971274	ypdB	KPN_02737	-	putative 2-component transcriptional regulator
2693	 58.70	0	3009534..3010499	-	321	152971275	glk	KPN_02738	-	glucokinase
2694	 63.53	0	3010787..3011998	+	403	152971276	yfeO	KPN_02739	-	hypothetical protein
2695	 61.93	0	3011995..3013662	-	555	152971277	-	KPN_02740	-	putative pyruvate decarboxylase
2696	 57.89	0	3013873..3014829	+	318	152971278	yghZ	KPN_02741	-	putative oxidoreductase
2697	 58.89	0	3014960..3015319	+	119	152971279	ypeC	KPN_02742	-	hypothetical protein
2698	 58.70	0	3015377..3016618	-	413	152971280	mntH	KPN_02743	-	manganese transport protein MntH
2699	 52.29	0	3016965..3018167	+	400	152971281	nupC	KPN_02744	-	NupC family nucleoside transporter
2700	 51.13	-1	3018174..3020387	-	737	152971282	yfeA	KPN_02745	-	hypothetical protein
2701	 57.23	0	3021024..3021362	+	112	152971283	yfeC	KPN_02748	-	putative negative regulator
2702	 57.76	0	3021366..3021758	+	130	152971284	yfeD	KPN_02749	-	putative negative regulator
2703	 55.32	0	3021810..3023228	-	472	152971285	gltX	KPN_02750	-	glutamyl-tRNA synthetase
2704	 59.86	0	3023971..3024822	-	283	152971286	yfeR	KPN_02755	-	LysR family transcriptional regulator
2705	 57.86	0	3024986..3025984	+	332	152971287	yfeH	KPN_02756	-	putative cytochrome oxidase
2706	 52.97	0	3025981..3026199	-	72	152971288	yfeC	KPN_02757	-	putative negative regulator
2707	 60.96	0	3026201..3028216	-	671	152971289	ligA	KPN_02758	-	NAD-dependent DNA ligase LigA
2708	 60.64	0	3028286..3029347	-	353	152971290	zipA	KPN_02759	-	cell division protein ZipA
2709	 57.35	0	3029578..3030339	+	253	152971291	cysZ	KPN_02760	-	putative sulfate transport protein CysZ
2710	 56.69	0	3030516..3031487	+	323	152971292	cysK	KPN_02761	-	cysteine synthase A
2711	 52.33	0	3031868..3032125	+	85	152971293	ptsH	KPN_02762	-	phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)
2712	 52.03	-1	3032170..3033897	+	575	152971294	ptsI	KPN_02763	-	phosphoenolpyruvate-protein phosphotransferase
2713	 48.82	-1	3033940..3034449	+	169	152971295	crr	KPN_02764	-	glucose-specific PTS system component
2714	 59.58	0	3034491..3034730	-	79	152971296	-	KPN_02765	-	hypothetical protein
2715	 62.40	0	3034727..3035593	-	288	152971297	pdxK	KPN_02766	-	pyridoxal kinase
2716	 64.82	+1	3035676..3036974	+	432	152971298	-	KPN_02767	-	putative regulatory protein
2717	 55.56	0	3037115..3037510	+	131	152971299	-	KPN_02768	-	hypothetical protein
2718	 60.86	0	3037507..3038418	-	303	152971300	cysM	KPN_02769	-	cysteine synthase B
2719	 62.19	0	3038537..3039631	-	364	152971301	cysA	KPN_02770	-	sulfate/thiosulfate transporter subunit
2720	 58.11	0	3039621..3040496	-	291	152971302	cysW	KPN_02771	-	sulfate/thiosulfate transporter permease subunit
2721	 59.83	0	3040496..3041329	-	277	152971303	cysU	KPN_02772	-	sulfate/thiosulfate transporter subunit
2722	 55.36	0	3041329..3042345	-	338	152971304	cysP	KPN_02773	-	thiosulfate transporter subunit
2723	 58.22	0	3042984..3043883	-	299	152971305	yfeX	KPN_02774	-	hypothetical protein
2724	 57.64	0	3043978..3044553	-	191	152971306	yfeY	KPN_02775	-	hypothetical protein
2725	 60.44	0	3044615..3045064	-	149	152971307	yfeZ	KPN_02776	-	hypothetical protein
2726	 56.69	0	3045051..3045491	-	146	152971308	ypeA	KPN_02777	-	putative acetyltransferase
2727	 57.50	0	3045688..3046560	+	290	152971309	amiA	KPN_02778	-	N-acetylmuramoyl-l-alanine amidase I
2728	 61.67	0	3046560..3047459	+	299	152971310	hemF	KPN_02779	-	coproporphyrinogen III oxidase
2729	 59.83	0	3047503..3048555	-	350	152971311	yfeG	KPN_02780	-	transcriptional regulator EutR
2730	 65.46	+1	3048601..3049098	-	165	152971312	yffI	KPN_02781	-	putative carboxysome structural protein, ethanolamine utilization
2731	 60.71	0	3049098..3049718	-	206	152971313	eutL	KPN_02782	-	putative carboxysome structural protein, ethanolamine utilization
2732	 63.89	+1	3049767..3050666	-	299	152971314	eutC	KPN_02783	-	ethanolamine ammonia-lyase small subunit
2733	 59.25	0	3050687..3052048	-	453	152971315	eutB	KPN_02784	-	ethanolamine ammonia-lyase, heavy chain
2734	 64.60	+1	3052060..3053463	-	467	152971316	eutA	KPN_02785	-	reactivating factor for ethanolamine ammonia lyase
2735	 59.53	0	3053460..3054692	-	410	152971317	eutH	KPN_02786	-	ethanolamine utilization; putative transport protein
2736	 65.74	+1	3054892..3056079	-	395	152971318	eutG	KPN_02787	-	ethanolamine utilization enzyme
2737	 62.77	0	3056069..3056914	-	281	152971319	eutJ	KPN_02788	-	ethanolamine utilization protein
2738	 62.82	0	3056918..3058321	-	467	152971320	eutE	KPN_02789	-	ethanolamine utilization protein
2739	 62.85	0	3058333..3058620	-	95	152971321	cchB	KPN_02790	-	detox protein
2740	 62.20	0	3058749..3059039	-	96	152971322	cchA	KPN_02791	-	detox protein
2741	 67.55	+1	3059078..3060094	-	338	152971323	eutI	KPN_02792	-	phosphotransacetylase
2742	 62.59	0	3060084..3060893	-	269	152971324	eutT	KPN_02793	-	putative cobalamin adenosyltransferase in ethanolamine utilization
2743	 61.59	0	3060890..3061579	-	229	152971325	eutQ	KPN_02794	-	putative regulator of ethanolamine utilization
2744	 55.00	0	3061557..3062036	-	159	152971326	eutP	KPN_02795	-	putative ethanolamine utilization protein
2745	 57.14	0	3062049..3062384	-	111	152971327	ypfE	KPN_02796	-	putative carboxysome structural protein, ethanol utilization
2746	 60.57	0	3062603..3064882	-	759	152971328	maeB	KPN_02797	-	malic enzyme
2747	 60.19	0	3065177..3066133	+	318	152971329	talA	KPN_02798	-	transaldolase A
2748	 61.80	0	3066150..3068144	+	664	152971330	tktB	KPN_02799	-	transketolase
2749	 63.52	0	3068134..3069150	-	338	152971331	ypfG	KPN_02800	-	hypothetical protein
2750	 57.62	0	3069244..3069840	-	198	152971332	yffH	KPN_02801	-	MutT-like protein
2751	 64.94	+1	3069899..3071812	-	637	152971333	aegA	KPN_02802	-	putative oxidoreductase Fe-S binding subunit
2752	 60.95	0	3072254..3075367	+	1037	152971334	acrD	KPN_02803	-	aminoglycoside/multidrug efflux system
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.