IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2606	 61.94	0	2917878..2918681	-	267	152971188	yfaU	KPN_02650	-	putative aldolase
2607	 62.40	0	2918696..2919985	-	429	152971189	yfaV	KPN_02651	-	putative transport protein
2608	 59.70	0	2920028..2921233	-	401	152971190	yfaW	KPN_02652	-	putative dehydratase
2609	 58.78	0	2921244..2922029	-	261	152971191	yfaX	KPN_02653	-	putative regulator
2610	 62.24	0	2922234..2923430	-	398	152971192	yfaY	KPN_02654	-	competence damage-inducible protein A
2611	 61.14	0	2923533..2924057	-	174	152971193	yfaZ	KPN_02655	-	putative porin
2612	 56.92	0	2924350..2925324	-	324	152971194	-	KPN_02656	-	putative transposase, YhgA-like protein
2613	 55.56	0	2925504..2925863	+	119	152971195	yfaO	KPN_02657	-	putative enzyme (Nudix hydrolase)
2614	 62.75	0	2925919..2927295	-	458	152971196	menE	KPN_02658	-	O-succinylbenzoic acid--CoA ligase
2615	 64.91	+1	2927292..2928257	-	321	152971197	menC	KPN_02659	-	O-succinylbenzoate synthase
2616	 58.97	0	2928257..2929114	-	285	152971198	menB	KPN_02660	-	naphthoate synthase
2617	 64.43	+1	2929129..2929887	-	252	152971199	yfbB	KPN_02661	-	acyl-CoA thioester hydrolase YfbB
2618	 65.65	+1	2929884..2931554	-	556	152971200	menD	KPN_02662	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
2619	 64.09	+1	2931637..2932956	-	439	152971201	menF	KPN_02663	-	menaquinone-specific isochorismate synthase
2620	 59.31	0	2933062..2933523	-	153	152971202	elaA	KPN_02664	-	putative transferase
2621	 60.59	0	2933581..2934501	+	306	152971203	elaC	KPN_02665	-	ribonuclease Z
2622	 61.18	0	2934556..2936013	-	485	152971204	nuoN	KPN_02666	-	NADH dehydrogenase subunit N
2623	 58.37	0	2936020..2937549	-	509	152971205	nuoM	KPN_02667	-	NADH dehydrogenase subunit M
2624	 59.28	0	2937719..2939560	-	613	152971206	nuoL	KPN_02668	-	NADH dehydrogenase subunit L
2625	 56.44	0	2939557..2939859	-	100	152971207	nuoK	KPN_02669	-	NADH dehydrogenase subunit K
2626	 60.00	0	2939856..2940410	-	184	152971208	nuoJ	KPN_02670	-	NADH dehydrogenase subunit J
2627	 57.27	0	2940422..2940964	-	180	152971209	nuoI	KPN_02671	-	NADH dehydrogenase subunit I
2628	 56.95	0	2940979..2941956	-	325	152971210	nuoH	KPN_02672	-	NADH dehydrogenase subunit H
2629	 62.12	0	2941953..2944679	-	908	152971211	nuoG	KPN_02673	-	NADH dehydrogenase subunit G
2630	 60.84	0	2944712..2946049	-	445	152971212	nuoF	KPN_02674	-	NADH dehydrogenase I subunit F
2631	 58.28	0	2946046..2946546	-	166	152971213	nuoE	KPN_02675	-	NADH dehydrogenase subunit E
2632	 58.87	0	2946549..2948357	-	602	152971214	nuoC	KPN_02676	-	bifunctional NADH:ubiquinone oxidoreductase subunit C/D
2633	 55.85	0	2948444..2949118	-	224	152971215	nuoB	KPN_02677	-	NADH dehydrogenase subunit B
2634	 56.67	0	2949134..2949493	-	119	152971216	nuoA	KPN_02678	-	NADH dehydrogenase alpha subunit
2635	 58.04	0	2950232..2951158	-	308	152971217	lrhA	KPN_02679	-	LysR family NADH dehydrogenase transcriptional regulator
2636	 56.65	0	2952031..2953248	+	405	152971218	yfbQ	KPN_02680	-	aminotransferase AlaT
2637	 54.33	0	2953330..2953929	+	199	152971219	yfbR	KPN_02681	-	hypothetical protein
2638	 58.70	0	2953974..2955806	-	610	152971220	yfbS	KPN_02682	-	putative response regulator, membrane protein
2639	 61.82	0	2955883..2956542	-	219	152971221	yfbT	KPN_02683	-	putative phosphatase
2640	 53.83	0	2956554..2956919	-	121	152971222	yfbU	KPN_02684	-	hypothetical protein
2641	 48.33	-1	2956929..2957048	-	39	152971223	yfbU	KPN_02685	-	hypothetical protein
2642	 57.89	0	2957136..2957591	-	151	152971224	yfbV	KPN_02686	-	hypothetical protein
2643	 55.94	0	2957929..2959131	+	400	152971225	ackA	KPN_02687	-	acetate kinase
2644	 59.87	0	2959347..2961479	+	710	152971226	pta	KPN_02688	-	phosphate acetyltransferase
2645	 58.33	0	2961572..2962123	-	183	152971227	yfcD	KPN_02689	-	putative enzyme (Nudix hydrolase)
2646	 57.40	0	2962181..2962741	-	186	152971228	yfcE	KPN_02690	-	phosphodiesterase
2647	 58.84	0	2962795..2963433	-	212	152971229	yfcF	KPN_02691	-	putative glutathione S-transferase
2648	 56.83	0	2963614..2964243	+	209	152971230	yfcG	KPN_02692	-	putative S-transferase
2649	 49.04	-1	2964309..2964671	+	120	152971231	folX	KPN_02693	-	D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase
2650	 61.74	0	2964690..2965583	+	297	152971232	yfcH	KPN_02694	-	putative cell division inhibitor, NAD(P)-binding
2651	 60.23	0	2965799..2966326	+	175	152971233	-	KPN_02695	-	putative acetyltransferase
2652	 54.26	0	2966332..2967105	-	257	152971234	hisP	KPN_02696	-	histidine/lysine/arginine/ornithine transporter subunit
2653	 53.00	0	2967113..2967829	-	238	152971235	hisM	KPN_02697	-	histidine and lysine/arginine/ornithine ABC transporter membrane protein
2654	 58.37	0	2967826..2968512	-	228	152971236	hisQ	KPN_02698	-	histidine and lysine/arginine/ornithine transport system ABC transporter membrane protein
2655	 51.98	-1	2968577..2969359	-	260	152971237	hisJ	KPN_02699	-	histidine ABC transporter periplasmic substrate-binding protein
2656	 56.18	0	2969627..2970370	-	247	152971238	argT	KPN_02700	-	lysine-, arginine-, ornithine-binding periplasmic protein
2657	 58.42	0	2970692..2971261	-	189	152971239	ubiX	KPN_02701	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
2658	 56.32	0	2971397..2972914	-	505	152971240	purF	KPN_02702	-	amidophosphoribosyltransferase
2659	 51.94	-1	2972948..2973436	-	162	152971241	cvpA	KPN_02703	-	colicin V production protein
2660	 62.46	0	2973653..2974342	-	229	152971242	dedD	KPN_02704	-	hypothetical protein
2661	 62.49	0	2974332..2975600	-	422	152971243	folC	KPN_02705	-	bifunctional folylpolyglutamate synthase/ dihydrofolate synthase
2662	 59.39	0	2975676..2976596	-	306	152971244	accD	KPN_02706	-	acetyl-CoA carboxylase subunit beta
2663	 55.00	0	2976782..2977441	-	219	152971245	dedA	KPN_02707	-	hypothetical protein
2664	 59.04	0	2977468..2978280	-	270	152971246	truA	KPN_02708	-	tRNA pseudouridine synthase A
2665	 60.65	0	2978280..2979293	-	337	152971247	usg	KPN_02709	-	putative semialdehyde dehydrogenase
2666	 61.01	0	2979357..2980469	-	370	152971248	pdxB	KPN_02710	-	erythronate-4-phosphate dehydrogenase
2667	 64.87	+1	2980691..2981581	+	296	152971249	flk	KPN_02711	-	flagella biosynthesis regulator
2668	 65.75	+1	2981668..2982759	-	363	152971250	yfcJ	KPN_02712	-	hypothetical protein
2669	 59.38	0	2983053..2984273	-	406	152971251	fabB	KPN_02713	-	3-oxoacyl-(acyl carrier protein) synthase I
2670	 63.05	0	2984432..2986420	+	662	152971252	yfcK	KPN_02714	-	5-methylaminomethyl-2-thiouridine methyltransferase
2671	 56.84	0	2986482..2986766	-	94	152971253	yfcL	KPN_02715	-	hypothetical protein
2672	 55.19	0	2986795..2987343	-	182	152971254	yfcM	KPN_02716	-	putative transporting ATPase
2673	 58.64	0	2987343..2988152	-	269	152971255	yfcA	KPN_02717	-	hypothetical protein
2674	 62.55	0	2988152..2988976	-	274	152971256	mepA	KPN_02718	-	penicillin-insensitive murein endopeptidase
2675	 59.94	0	2988979..2990064	-	361	152971257	aroC	KPN_02719	-	chorismate synthase
2676	 56.82	0	2990106..2991110	-	334	152971258	yfcB	KPN_02720	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
2677	 55.43	0	2991206..2991757	+	183	152971259	yfcN	KPN_02721	-	hypothetical protein
2678	 57.82	0	2991778..2992263	-	161	152971260	sixA	KPN_02722	-	phosphohistidine phosphatase
2679	 58.60	0	2992473..2994617	-	714	152971261	yfcX	KPN_02723	-	multifunctional fatty acid oxidation complex subunit alpha
2680	 62.55	0	2994617..2995927	-	436	152971262	yfcY	KPN_02724	-	3-ketoacyl-CoA thiolase
2681	 53.91	0	2996087..2996329	-	80	152971263	yfcZ	KPN_02725	-	hypothetical protein
2682	 58.47	0	2996739..2998067	+	442	152971264	fadL	KPN_02726	-	long-chain fatty acid outer membrane transporter
2683	 56.56	0	2998129..2998890	-	253	152971265	vacJ	KPN_02727	-	lipoprotein precursor
2684	 54.73	0	2999180..3000109	+	309	152971266	yfdC	KPN_02728	-	putative transport protein
2685	 58.39	0	3000522..3001004	+	160	152971267	-	KPN_02730	-	hypothetical protein
2686	 47.73	-1	3001372..3002253	+	293	152971268	-	KPN_02731	-	hypothetical protein
2687	 59.19	0	3002263..3003171	-	302	152971269	-	KPN_02732	-	DNA-binding transcriptional regulator CynR
2688	 58.39	0	3003304..3003762	+	152	152971270	-	KPN_02733	-	putative adenosine deaminase
2689	 64.49	+1	3003759..3004955	+	398	152971271	-	KPN_02734	-	putative cyanate transporter
2690	 57.12	0	3005437..3006651	-	404	152971272	yfdZ	KPN_02735	-	aminotransferase
2691	 55.42	0	3007034..3008731	+	565	152971273	ypdA	KPN_02736	-	putative sensor protein
2692	 50.07	-1	3008728..3009480	+	250	152971274	ypdB	KPN_02737	-	putative 2-component transcriptional regulator
2693	 58.70	0	3009534..3010499	-	321	152971275	glk	KPN_02738	-	glucokinase
2694	 63.53	0	3010787..3011998	+	403	152971276	yfeO	KPN_02739	-	hypothetical protein
2695	 61.93	0	3011995..3013662	-	555	152971277	-	KPN_02740	-	putative pyruvate decarboxylase
2696	 57.89	0	3013873..3014829	+	318	152971278	yghZ	KPN_02741	-	putative oxidoreductase
2697	 58.89	0	3014960..3015319	+	119	152971279	ypeC	KPN_02742	-	hypothetical protein
2698	 58.70	0	3015377..3016618	-	413	152971280	mntH	KPN_02743	-	manganese transport protein MntH
2699	 52.29	0	3016965..3018167	+	400	152971281	nupC	KPN_02744	-	NupC family nucleoside transporter
2700	 51.13	-1	3018174..3020387	-	737	152971282	yfeA	KPN_02745	-	hypothetical protein
2701	 57.23	0	3021024..3021362	+	112	152971283	yfeC	KPN_02748	-	putative negative regulator
2702	 57.76	0	3021366..3021758	+	130	152971284	yfeD	KPN_02749	-	putative negative regulator
2703	 55.32	0	3021810..3023228	-	472	152971285	gltX	KPN_02750	-	glutamyl-tRNA synthetase
2704	 59.86	0	3023971..3024822	-	283	152971286	yfeR	KPN_02755	-	LysR family transcriptional regulator
2705	 57.86	0	3024986..3025984	+	332	152971287	yfeH	KPN_02756	-	putative cytochrome oxidase
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.