IslandPathversion 1.0

IslandPath Analysis: Klebsiella pneumoniae subsp. pneumoniae MGH 78578



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.88 STD DEV: 5.81
Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome - 1..5315120
4776 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2560	 53.75	0	2857630..2858202	+	190	152971142	yeiP	KPN_02603	-	elongation factor P
2561	 57.93	0	2858273..2859463	-	396	152971143	-	KPN_02604	-	mannonate dehydratase
2562	 62.51	0	2859671..2861137	+	488	152971144	yeiQ	KPN_02605	-	putative mannitol dehydrogenase
2563	 62.99	0	2861258..2862235	+	325	152971145	yeiR	KPN_02606	-	putative enzyme
2564	 56.16	0	2862273..2862986	+	237	152971146	yeiU	KPN_02607	-	putative permease
2565	 55.05	0	2863518..2863982	+	154	152971147	spr	KPN_02608	-	putative outer membrane lipoprotein
2566	 57.07	0	2864171..2865733	+	520	152971148	rtn	KPN_02609	-	hypothetical protein
2567	 60.58	0	2865802..2867607	+	601	152971149	yejA	KPN_02610	-	oligopeptide ABC transporter periplasmic substrate-binding protein
2568	 57.99	0	2867617..2868711	+	364	152971150	yejB	KPN_02611	-	oligopeptide ABC transporter membrane protein
2569	 62.18	0	2868711..2869736	+	341	152971151	yejE	KPN_02612	-	oligopeptide ABC transporter membrane protein
2570	 63.77	+1	2869738..2871327	+	529	152971152	yejF	KPN_02613	-	putative ATP-binding component of a transport system
2571	 56.23	0	2871331..2871675	-	114	152971153	yejG	KPN_02614	-	hypothetical protein
2572	 59.57	0	2872007..2873203	-	398	152971154	bcr	KPN_02615	-	bicyclomycin/multidrug efflux system
2573	 59.58	0	2873200..2873919	-	239	152971155	rsuA	KPN_02616	-	16S rRNA pseudouridylate synthase A
2574	 61.66	0	2874067..2875824	+	585	152971156	yejH	KPN_02617	-	putative ATP-dependent helicase
2575	 51.93	-1	2875961..2876245	+	94	152971157	rplY	KPN_02618	-	50S ribosomal protein L25
2576	 61.15	0	2876304..2877191	-	295	152971158	-	KPN_02619	-	LysR family transcriptional regulator
2577	 60.24	0	2877275..2878582	+	435	152971159	-	KPN_02620	-	putative beta-lactamase
2578	 59.63	0	2878601..2879197	-	198	152971160	-	KPN_02621	-	MutT-like protein
2579	 64.96	+1	2879280..2880041	+	253	152971161	-	KPN_02622	-	putative DEOR-type transcriptional regulator
2580	 58.13	0	2880061..2881068	-	335	152971162	yejK	KPN_02623	-	nucleoid-associated protein NdpA
2581	 54.39	0	2881255..2881482	+	75	152971163	yejL	KPN_02624	-	hypothetical protein
2582	 58.89	0	2881501..2883261	+	586	152971164	yejM	KPN_02625	-	putative phopshatase/sulphatase
2583	 55.23	0	2883599..2884708	+	369	152971165	-	KPN_02627	-	putative transport protein
2584	 57.21	0	2884931..2885374	+	147	152971166	eco	KPN_02628	-	ecotin precursor
2585	 58.17	0	2885441..2887075	-	544	152971167	mqo	KPN_02629	-	malate:quinone oxidoreductase
2586	 62.86	0	2887357..2888565	+	402	152971168	-	KPN_02630	-	putative sulfate transporter
2587	 61.24	0	2888557..2889993	-	478	152971169	-	KPN_02631	-	putative MgtE integral membrane region
2588	 62.10	0	2890143..2891786	-	547	152971170	yojI	KPN_02632	-	multidrug transporter membrane component/ATP-binding component
2589	 63.91	+1	2891861..2892514	-	217	152971171	alkB	KPN_02633	-	DNA repair system specific for alkylated DNA
2590	 66.85	+1	2892514..2893578	-	354	152971172	ada	KPN_02634	-	O6-methylguanine-DNA methyltransferase; transcription activator/repressor
2591	 61.63	0	2893652..2894704	-	350	152971173	yojL	KPN_02635	-	thiamine biosynthesis lipoprotein ApbE
2592	 53.80	0	2894808..2895911	-	367	152971174	ompC	KPN_02636	-	outer membrane porin protein C
2593	 56.21	0	2896683..2899340	+	885	152971175	yojN	KPN_02637	-	phosphotransfer intermediate protein in two-component regulatory system with RcsBC
2594	 53.46	0	2899356..2900006	+	216	152971176	rcsB	KPN_02638	-	transcriptional regulator RcsB
2595	 57.66	0	2900052..2902892	-	946	152971177	rcsC	KPN_02639	-	hybrid sensory kinase in two-component regulatory system with RcsB and YojN
2596	 58.09	0	2903024..2905657	-	877	152971178	gyrA	KPN_02640	-	DNA gyrase subunit A
2597	 58.98	0	2905804..2906532	+	242	152971179	ubiG	KPN_02641	-	3-demethylubiquinone-9 3-methyltransferase
2598	 57.57	0	2906877..2909162	+	761	152971180	nrdA	KPN_02642	-	ribonucleotide-diphosphate reductase subunit alpha
2599	 55.44	0	2909264..2910394	+	376	152971181	nrdB	KPN_02643	-	ribonucleotide-diphosphate reductase subunit beta
2600	 57.65	0	2910394..2910648	+	84	152971182	yfaE	KPN_02644	-	2Fe-2S ferredoxin YfaE
2601	 54.62	0	2911112..2912182	-	356	152971183	glpQ	KPN_02645	-	glycerophosphodiester phosphodiesterase
2602	 57.31	0	2912192..2913538	-	448	152971184	glpT	KPN_02646	-	sn-glycerol-3-phosphate transporter
2603	 64.39	+1	2913810..2915432	+	540	152971185	glpA	KPN_02647	-	sn-glycerol-3-phosphate dehydrogenase subunit A
2604	 66.03	+1	2915422..2916681	+	419	152971186	glpB	KPN_02648	-	anaerobic glycerol-3-phosphate dehydrogenase subunit B
2605	 60.14	0	2916678..2917856	+	392	152971187	glpC	KPN_02649	-	sn-glycerol-3-phosphate dehydrogenase subunit C
2606	 61.94	0	2917878..2918681	-	267	152971188	yfaU	KPN_02650	-	putative aldolase
2607	 62.40	0	2918696..2919985	-	429	152971189	yfaV	KPN_02651	-	putative transport protein
2608	 59.70	0	2920028..2921233	-	401	152971190	yfaW	KPN_02652	-	putative dehydratase
2609	 58.78	0	2921244..2922029	-	261	152971191	yfaX	KPN_02653	-	putative regulator
2610	 62.24	0	2922234..2923430	-	398	152971192	yfaY	KPN_02654	-	competence damage-inducible protein A
2611	 61.14	0	2923533..2924057	-	174	152971193	yfaZ	KPN_02655	-	putative porin
2612	 56.92	0	2924350..2925324	-	324	152971194	-	KPN_02656	-	putative transposase, YhgA-like protein
2613	 55.56	0	2925504..2925863	+	119	152971195	yfaO	KPN_02657	-	putative enzyme (Nudix hydrolase)
2614	 62.75	0	2925919..2927295	-	458	152971196	menE	KPN_02658	-	O-succinylbenzoic acid--CoA ligase
2615	 64.91	+1	2927292..2928257	-	321	152971197	menC	KPN_02659	-	O-succinylbenzoate synthase
2616	 58.97	0	2928257..2929114	-	285	152971198	menB	KPN_02660	-	naphthoate synthase
2617	 64.43	+1	2929129..2929887	-	252	152971199	yfbB	KPN_02661	-	acyl-CoA thioester hydrolase YfbB
2618	 65.65	+1	2929884..2931554	-	556	152971200	menD	KPN_02662	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
2619	 64.09	+1	2931637..2932956	-	439	152971201	menF	KPN_02663	-	menaquinone-specific isochorismate synthase
2620	 59.31	0	2933062..2933523	-	153	152971202	elaA	KPN_02664	-	putative transferase
2621	 60.59	0	2933581..2934501	+	306	152971203	elaC	KPN_02665	-	ribonuclease Z
2622	 61.18	0	2934556..2936013	-	485	152971204	nuoN	KPN_02666	-	NADH dehydrogenase subunit N
2623	 58.37	0	2936020..2937549	-	509	152971205	nuoM	KPN_02667	-	NADH dehydrogenase subunit M
2624	 59.28	0	2937719..2939560	-	613	152971206	nuoL	KPN_02668	-	NADH dehydrogenase subunit L
2625	 56.44	0	2939557..2939859	-	100	152971207	nuoK	KPN_02669	-	NADH dehydrogenase subunit K
2626	 60.00	0	2939856..2940410	-	184	152971208	nuoJ	KPN_02670	-	NADH dehydrogenase subunit J
2627	 57.27	0	2940422..2940964	-	180	152971209	nuoI	KPN_02671	-	NADH dehydrogenase subunit I
2628	 56.95	0	2940979..2941956	-	325	152971210	nuoH	KPN_02672	-	NADH dehydrogenase subunit H
2629	 62.12	0	2941953..2944679	-	908	152971211	nuoG	KPN_02673	-	NADH dehydrogenase subunit G
2630	 60.84	0	2944712..2946049	-	445	152971212	nuoF	KPN_02674	-	NADH dehydrogenase I subunit F
2631	 58.28	0	2946046..2946546	-	166	152971213	nuoE	KPN_02675	-	NADH dehydrogenase subunit E
2632	 58.87	0	2946549..2948357	-	602	152971214	nuoC	KPN_02676	-	bifunctional NADH:ubiquinone oxidoreductase subunit C/D
2633	 55.85	0	2948444..2949118	-	224	152971215	nuoB	KPN_02677	-	NADH dehydrogenase subunit B
2634	 56.67	0	2949134..2949493	-	119	152971216	nuoA	KPN_02678	-	NADH dehydrogenase alpha subunit
2635	 58.04	0	2950232..2951158	-	308	152971217	lrhA	KPN_02679	-	LysR family NADH dehydrogenase transcriptional regulator
2636	 56.65	0	2952031..2953248	+	405	152971218	yfbQ	KPN_02680	-	aminotransferase AlaT
2637	 54.33	0	2953330..2953929	+	199	152971219	yfbR	KPN_02681	-	hypothetical protein
2638	 58.70	0	2953974..2955806	-	610	152971220	yfbS	KPN_02682	-	putative response regulator, membrane protein
2639	 61.82	0	2955883..2956542	-	219	152971221	yfbT	KPN_02683	-	putative phosphatase
2640	 53.83	0	2956554..2956919	-	121	152971222	yfbU	KPN_02684	-	hypothetical protein
2641	 48.33	-1	2956929..2957048	-	39	152971223	yfbU	KPN_02685	-	hypothetical protein
2642	 57.89	0	2957136..2957591	-	151	152971224	yfbV	KPN_02686	-	hypothetical protein
2643	 55.94	0	2957929..2959131	+	400	152971225	ackA	KPN_02687	-	acetate kinase
2644	 59.87	0	2959347..2961479	+	710	152971226	pta	KPN_02688	-	phosphate acetyltransferase
2645	 58.33	0	2961572..2962123	-	183	152971227	yfcD	KPN_02689	-	putative enzyme (Nudix hydrolase)
2646	 57.40	0	2962181..2962741	-	186	152971228	yfcE	KPN_02690	-	phosphodiesterase
2647	 58.84	0	2962795..2963433	-	212	152971229	yfcF	KPN_02691	-	putative glutathione S-transferase
2648	 56.83	0	2963614..2964243	+	209	152971230	yfcG	KPN_02692	-	putative S-transferase
2649	 49.04	-1	2964309..2964671	+	120	152971231	folX	KPN_02693	-	D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase
2650	 61.74	0	2964690..2965583	+	297	152971232	yfcH	KPN_02694	-	putative cell division inhibitor, NAD(P)-binding
2651	 60.23	0	2965799..2966326	+	175	152971233	-	KPN_02695	-	putative acetyltransferase
2652	 54.26	0	2966332..2967105	-	257	152971234	hisP	KPN_02696	-	histidine/lysine/arginine/ornithine transporter subunit
2653	 53.00	0	2967113..2967829	-	238	152971235	hisM	KPN_02697	-	histidine and lysine/arginine/ornithine ABC transporter membrane protein
2654	 58.37	0	2967826..2968512	-	228	152971236	hisQ	KPN_02698	-	histidine and lysine/arginine/ornithine transport system ABC transporter membrane protein
2655	 51.98	-1	2968577..2969359	-	260	152971237	hisJ	KPN_02699	-	histidine ABC transporter periplasmic substrate-binding protein
2656	 56.18	0	2969627..2970370	-	247	152971238	argT	KPN_02700	-	lysine-, arginine-, ornithine-binding periplasmic protein
2657	 58.42	0	2970692..2971261	-	189	152971239	ubiX	KPN_02701	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
2658	 56.32	0	2971397..2972914	-	505	152971240	purF	KPN_02702	-	amidophosphoribosyltransferase
2659	 51.94	-1	2972948..2973436	-	162	152971241	cvpA	KPN_02703	-	colicin V production protein
57.88	MEAN

5.81	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.